Array 1 86-1773 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPVA01000030.1 Flavobacterium columnare strain JIP P11/91 NODE_30_length_40392_cov_168.103440, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 86 36 97.2 30 ......A............................. ACTATGTTGGAAGAATTTCACGATAATGTG T,TATAA [87,95] 158 36 100.0 30 .................................... TTTAAAAAAACAAAAGAATGGGCATTGAAA 224 36 100.0 30 .................................... GGAAAGAGTTGAAAAATCCCCTGTACCCCC 290 36 100.0 30 .................................... AATGTTTTAGCTTCTAACGCTGCATTATCT 356 36 100.0 30 .................................... TATAGCTACAAGCAGTTGTTAGCAAATAGG 422 36 100.0 30 .................................... TATCCTTCTGTTGAACAATCTGCTTTGACA 488 36 100.0 30 .................................... AAATGAGTAGATTGTGAAACCAACTAAAAA 554 36 100.0 30 .................................... AACAAAAAAAAAGGAGGTACAGGATTTGTA 620 36 100.0 29 .................................... TCTTTAAATATTATTTCAGGAGCTCATAT 685 36 100.0 30 .................................... CCGTATCATGTCTGATTTTATTATGGCCTA 751 36 100.0 30 .................................... TTTTTATTTTATTTATATAAATGTTTTCCA 817 36 100.0 30 .................................... TAATTTTCAAGTTTCTCCTTTAGGATTAAG 883 36 100.0 30 .................................... AATGATTGTTTTTTGTTGTAATATTGAACA 949 36 100.0 29 .................................... CTATTTTACCTCCACCCCCTGCCTGATAT 1014 36 100.0 30 .................................... TATAACACTTCCAAAAGCCGAATATTTGTA 1080 36 100.0 30 .................................... AAACATTCGCAAAGTCAAAATCACTTTTGG 1146 36 100.0 29 .................................... GAAAATTATAGATATATGGTTGAAAAGCA 1211 36 100.0 30 .................................... TTGAAAATTAAAAACAAGTTCTTATATTTA 1277 36 100.0 30 .................................... TACATTCATATTTGAAGATACTGTGTGCAA 1343 36 100.0 29 .................................... CCGCTAATTTCGCTACATAATAATACAAA 1408 36 100.0 30 .................................... CCAGTAGGAAGAACACGTATGTGGTAAGGG 1474 36 100.0 30 .................................... TTAGATAATAGATTAGTTGCTTATGATTAT 1540 36 100.0 30 .................................... TTTCAACTCTCTTTTCATTATACTCTATAG 1606 36 100.0 30 .................................... TTTGAATTGGTTTTTAGTATTCGATGCTTC 1672 36 100.0 30 .................................... TCCCAGTCAACAATACCAGCCATACGACCC 1738 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 26 36 99.9 30 GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT # Left flank : AAAACACGATATTATTTGGTTAAAAATTACGATTGTAATTTCAGTTGTGGTTTACAAACACCAAGTCAATATTTGTTATAGGTGTG # Right flank : TAGCTAACAGCTTAGTTATTAAATATCAAAGCATTAAGCCAAAATATCGTTAAAAAAAATGCTTCTTTTTTGGCACGTTATACCAAGATTGAAGCATTTTTTTATTTCTAAAACAGTTCCAGTTGGGTGGGTTGTGGTGCTTTAGGGGTTTCTACTTTACCCCAAAAGTTTTGTATGTTCCCAAATTGCTTGTCTGTAATTCGTAACATACTTACTTTTCCTGAAGGAGGCAGGAGTTTGTGTACACGTTTTTCATGTACATCGGCACTTTCGCTACTGGCACAATGCCGTATATATACCGAGTATTGCATCATACTAAAACCATCTTTCAAAAGTTGGTTCCGAAATCCAGAAGCATTTTTTCGGTCTTTCTTAGTCTCAGTAGGCAAATCAAAAAACACAAACAACCACATAATTCGATACCCGTTTAAATCCATAATTTTGGGTATTTTATCTTTTTACGATCGCCCGAAAAACACTGTTGTAAGGAACTTGCCGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 18389-17437 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPVA01000015.1 Flavobacterium columnare strain JIP P11/91 NODE_15_length_72336_cov_184.173704, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 18388 36 100.0 30 .................................... AATCGAATATAAAATTGACCTTGAGGAATT 18322 36 100.0 29 .................................... ATCATAATTCTGGGCTTCACCTTCGTTAG 18257 36 100.0 28 .................................... TAGAAAATGAAAAATATGAATCGAATGC 18193 36 100.0 29 .................................... AGTATCAAACATCATATCTATAAAACCTT 18128 36 100.0 30 .................................... TGATTGTTATCCAATTGAAAATCTTTCATG 18062 36 100.0 30 .................................... TGAGATTATTTCTAAATTATATTTTTCCGC 17996 36 100.0 29 .................................... AAATTCATCTGTTTCTTCATCGTAAGATT 17931 36 100.0 29 .................................... TCTCAATAGCTGTGGTTTCCACGTTTTCT 17866 36 100.0 29 .................................... TTTTGTTTGTTTACTCTCTCCTTGTTTGA 17801 36 100.0 30 .................................... AATGAGTGGTTGTTTTTCAGTTGTGAAATA 17735 36 97.2 30 .....A.............................. TCTTTTTATGTGGTATTTTAAATTACCATA 17669 36 100.0 29 .................................... TTCCTTTGGAATCAAATACGCCTATATAT 17604 36 97.2 30 ........................C........... AACTAACGGCCAGTTTGCCGTTTCAGTCAA 17538 36 100.0 30 .................................... TATTTCAGTCCCTATAGGAAATACACCATA 17472 36 69.4 0 .........................AGGGACGAGCG | ========== ====== ====== ====== ==================================== ============================== ================== 15 36 97.6 30 GTTGGGAAAGCCCTTATTTTGAAGGGTATCTACAAC # Left flank : TGAAATCATAAATTTAGAAAACATAGATATTGAAATTTTACTTAAATATTATGATTATAATACTGAAGAGTTGAAGGAAAAAATAAAAAATATGGATGAGGATGAAAAAGCCAAAATAATTAATACTAAAGAGAATTATAACAAAATAACCAATGTTTTAATTAAAAAAGCACTTGTTTTAATTATCATTCGCAACAAAATGGCGCACAATCAATATCCTCCTAAATTTATTTACGATTTAGCGAATCGTTTTGTCCCAAAAAAAGAAGAAGAATACTTTGCGACCTATTTCAACCGAGTTTTTGAAACCATAACAAAAGAATTATGGGAAAACAAAGAGAAAAAAGATAAAACACAGGTCTAAATACAATTGCTCTTTGACATTTTAAATTAGGATTAAAAAAATGACTACATTTGCAGTGATTAAAACAAAAAAAGTTCATTTTTTAGTATAAAAAATTGTAGTAATCCCTTACTATGAGAGGCTTACCAGCGTTTAG # Right flank : TTAAAAAATAGTCGAATGGACTATTTTAGCGAAGTAGCCAGGAGGCGCGTGGGCGTTTAAAACCGAATTCAATTTTTTTGAAGGAGGGACGAGCGTTAAGGAAGCTGTCCAAAAAGTACTAATTCAACATCCAGTTTGTCACTCCTACGTAAGGAGGAGTCTCATAATCAATAGTATGTAATTTCTTCCTTTGGTCAAAATCACAAGATTGCGAACTTTTTGGACAGTCTCTAGCAAAATAGCGAGCAGGCGTTTGAAACCAAATTCAATTATTTAAAAAATAGATAAACCATAATTCTTATTCATAGAAATACCTCTTTTTTTAAAATAACAAAAACAAACCTATAACACAATCAAGTAAATATGATCTGTATACTACCTCCTAAACTTCCTTATAATTTAACCTCAACACCTAAGATATTTTTGTAAATTTGAATCATCAAACCATTTGGAATCATGAAGGCTAAATATATTAATCCGTTTACCGACTTTGGATTTAA # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGGAAAGCCCTTATTTTGAAGGGTATCTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.30,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA //