Array 1 102048-97755 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJRN01000006.1 Halomonas saliphila strain LCB169 Scaffold6_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 102047 28 100.0 32 ............................ GAGATCCTCAAGAAGTCGAGCGTCCCGGTCTA 101987 28 100.0 32 ............................ ATCCAGGAGCGCATGGATCGCCGTTCAGAGCG 101927 28 100.0 32 ............................ TCCCGCCGCCGAGGCGCTGCGTCAGCAGAAGC 101867 28 100.0 32 ............................ TGCCCGCTAAGGGTTAGGTGGCCGAGCGAGTC 101807 28 100.0 32 ............................ GAGGGCACCGTCTGGCAGCGCGACGACGGCGT 101747 28 100.0 32 ............................ TGGCCGCGCAGGCTGTTGGCCGCGAACATGCC 101687 28 100.0 32 ............................ GCCGATTCCGCGACGGCGGCCGGGAACAGCGA 101627 28 100.0 32 ............................ AGCGGCGGGGCGCAGAGCGCCACCCGCGACGC 101567 28 100.0 32 ............................ GCGCCCAGCAGAGCCGCAACCGCGAGCTGCTC 101507 28 100.0 32 ............................ GGCACCGCCCAGCAGTTCGCCGACCTGTCGAG 101447 28 100.0 32 ............................ ACAGCGGGCACCCCATGCGGGCCAGCCCGCCC 101387 28 100.0 32 ............................ TCAACTGGCGGCGCCACCACAGCGGGCACCCC 101327 28 100.0 32 ............................ ATGTCCGATGAAGTCGGAATTCGAGCCGCTGA 101267 28 100.0 32 ............................ TATCTCAATGGCGTCTGGTCCCGTGCCCGCGC 101207 28 100.0 32 ............................ GTCCAGGGCGGCGCCGAAATGCGCTGCGGGAC 101147 28 100.0 33 ............................ AGAAGATCGCAGCGGTCGTGTCAGGAGCGAAAC 101086 28 100.0 32 ............................ TCTTGCTCCTGGCGGTCCCAGGTCAGCCGCTC 101026 28 100.0 32 ............................ AGCAGTTCCTGGAGCGCTACGCCGAGCCTCTC 100966 28 100.0 32 ............................ AAGTTCGCCAACCGGGCCGCGAAGAAGATCCC 100906 28 100.0 32 ............................ AGACCCAGCTGCACCAGGCGATACGCCGCTTC 100846 28 100.0 32 ............................ GAGTATCGCAAGGCGCCGCGAGTGATTGGCGT 100786 28 100.0 32 ............................ TCGAAGCGCTCCACGTCTGCCAGCAGCAGCTC 100726 28 100.0 32 ............................ GCCCGGAAACCACCCGCCAGCGCCTTGCCGAA 100666 28 100.0 32 ............................ GCCGCCATCTTCTGGCTGAAGAACCGACAGCC 100606 28 100.0 32 ............................ CTGACCGGGCTGGATCACCTCGAAGGCAAGGA 100546 28 100.0 32 ............................ ACTCTGGTGACCGCGCCGCCCAGCAGGCCGGA 100486 28 100.0 32 ............................ AGCTTGCGGGCGATCGCGTAGCGCAGGCCGAC 100426 28 100.0 32 ............................ TGGCTCAGCACCGGGTAGATGTCGGCAGGCGA 100366 28 100.0 32 ............................ ACCTGCTCCACGCCCCGGCCACCGCCCTGGAG 100306 28 100.0 32 ............................ GTACAGACTGCCTCGATGCCGCTCTTGCCAAC 100246 28 100.0 32 ............................ TGACCGCACTCATGCAGCAGATGGGGCTGAGT 100186 28 100.0 32 ............................ TGCCACTGGCTCACAGCGCAAGGTCTACAGGA 100126 28 100.0 32 ............................ ATTACGCGGTCTCCTTCTTGCCGTAGCGCTTC 100066 28 100.0 32 ............................ AGCAGGACATCATGGAGATCGAGCAGCGCATC 100006 28 100.0 32 ............................ AGTGCCTTGTTCAAAAGCCTGATCGATCAAGC 99946 28 100.0 32 ............................ ACGATGATGGCGGAGGTGCCGAAGCACCCCAG 99886 28 100.0 32 ............................ AGCGCCCGGTGGACTGGGAGGGCAACGAGCAG 99826 28 100.0 32 ............................ TTCACCAGCTCATGCAGCCCGTGCGGATCGTC 99766 28 100.0 32 ............................ GTCGAGAGACGAGTCACGGCAGACCAGCGGCC 99706 28 100.0 32 ............................ ATCTGCACTGACACCAGAGACAAGCGCATCGT 99646 28 100.0 32 ............................ ATGATCTTCCAGCTTCTGATGATCGTATGGCT 99586 28 100.0 32 ............................ GGCTTGAATCTCAGCGAGGCTGAGCAGACCGG 99526 28 100.0 32 ............................ GATCGCCTCCATGGGAATGGCGAAGCTCATGA 99466 28 100.0 32 ............................ GTTACTCGCCCAACGAGACGATGGTCTATCAG 99406 28 100.0 32 ............................ ATACCGCTCGGGGCCTCAACCCGGGCGCGTCG 99346 28 100.0 32 ............................ TGATTCTCGACGAGCGCGGCGAGCGCACCGAG 99286 28 100.0 32 ............................ TCAGCCGACTGCAGGCCCGGATCGAAGCGGAG 99226 28 100.0 32 ............................ ATCGCCCGGCAGCGCCCACCCACCACGGCCGT 99166 28 96.4 32 .........................T.. ACCTGCCGGTAGCCGGTGGCCAGGTAGTAGGT 99106 28 100.0 32 ............................ ATCTCTAGCGCATCGCCCTCCTTAAGGTCGGT 99046 28 100.0 32 ............................ TCTACCCGTTGGGTCGGCGTGGCATCGGCCCA 98986 28 100.0 32 ............................ TGGTGCAGGAGCGGCGCTTGACCCGCGACCAG 98926 28 100.0 32 ............................ ACCGAGAGACCGCCGAGGGGGTAACGCCGAAA 98866 28 100.0 32 ............................ GTACAGACTGCCTCGATGCCGCTCTTGCCAAC 98806 28 100.0 32 ............................ TGACCGCACTCATGCAGCAGATGGGGCTGAGT 98746 28 100.0 32 ............................ GTCGATCTCGCCGTCGGCATCGGCGACCGCCC 98686 28 100.0 33 ............................ TGGTGCGAAGAACGCATCCTCGTCGGCGAACAT 98625 28 96.4 32 ..........A................. ATCGTGGAACATGCCGCGCATGTGCTCCATCC 98565 28 100.0 32 ............................ ATGCATGACGAGCTGATCGAGAGCAACCCGCT 98505 28 100.0 32 ............................ CTGGAGCTGGCCCGTGAGCTTGAGCGCGAGAG 98445 28 100.0 32 ............................ ACCGTCGACGGCCTCGAAACCGCCATCGTCGC 98385 28 100.0 32 ............................ ACGCCGCCCGAAAAGCGGTCAGGATCGAAGCC 98325 28 100.0 32 ............................ TTGAGCGGACCCGAATCCTATCCCACCCTTAA 98265 28 100.0 33 ............................ CTCGCGGTCGCGGGTGCCGGTGGAACGGGTGCG 98204 28 100.0 32 ............................ GCCGGCAGCCAGGCCAGTGGTGGGGTTGGCGT 98144 28 100.0 32 ............................ TGATGCGCGACTGGCGCAAGGGCGATGCCGCA 98084 28 100.0 32 ............................ GACTACCAGCGCTGGGAGCGCCAGCAAGGAGG 98024 28 100.0 32 ............................ GACTACCAGCGCTGGGAGCGCCAGCAAGGAGG 97964 28 100.0 32 ............................ AGCTGCAAGCCCGCAGGGAGGCATGACCCATG 97904 28 100.0 32 ............................ CTGAAGACCCCTGCAAGGAAGCACGTTGGCCA 97844 28 100.0 32 ............................ TGCTTCTCCGCGATCAGGCGGTCGAGGCTGGC 97784 28 92.9 0 .............T...........C.. | T,T [97757,97762] ========== ====== ====== ====== ============================ ================================= ================== 72 28 99.8 32 GTGAGCTGCCGCACAGGCAGCTCAGAAA # Left flank : CGCGATTGGAGCAGTTGATGGAGATTGCATGGCTCACCGGCATGCGCGATCACGTAATGTTGGAAGCCATTCAGCCAGTACCTGCCGAGGCGCGGCATCGTAACGTTCGGCGCCGACAGTTCAACACTGGAAGCCCTAGCCGCGCGAAGCGTTATGCCCAACGGCACAGCATCGGGGTCGAAGAGGCACAGCGCTTGATGGAAACGCCCGCCGCGCGCCAGATCGCCCTGCCTTTCGTGCAGGTCAGCAGCCGCTCCAGTGGGCAGCGGTTTGCGCTATTCATCGAGCATGGCCAGCTACAGCCTCAGCCTGTCGCGGGTCGCTTCAATCACTATGGATTGAGCGGTGAGGCCACTGTGCCCTGGTTCTGACCCTTTTTAGGAGGGTTTCATTAGGTTCCTGAAAATCAAGTTGTTAGCGACGCCTCTCTAAAAAGGGAGGCGTCGCTCCATCAAGGGGTTGTTCTTTAACAATCAAGTACTTAATTTGAGTATGCTCTA # Right flank : GTGGAGCGCTCTTATCCAAACTCCTCCGTATCCACATCCGCCTGCTGCGCCTCGCTGTAGCGGGCGCCGGCCACTTGGTTCGGCGTCATCATGGCGTTGAGTCGGGCGACGGTCGGGTTGTCCAGGCTAAGCGGCTCGGCCGCTAGGTTCTCGCGCATGTGCTCGACGGAGCGTGTGCCGGGTATGGGGATGATGTCGTTTCCCTGGGCCTTGAGCCAGGCCAGGGCTAGCTGGGCGGGGGTGACTCCCAATTCGTTCGCGACGGCCGTGAAGTCTTCCAGCAACCGCAGGTTCTTGGGGTAGTTCTCGGCGTTGAAGCGCGGCATGTGGCGGCGCATGTCGCCTTCCTCGAAGGCCGCCGGTTCCCTGAGGGCGCCGGTCAGAAAGCCTCTGCCCAGGGGGCTGAAGGCCACCAGCGCCGTATCCGCCTCTCGACACGCTTCGATCAAGGCAATCTCGGGGTTGCGCGTCCACAGCGAATATTCGGACTGCACCGCGGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCTGCCGCACAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCACAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //