Array 1 3821257-3821956 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP057311.1 Escherichia fergusonii strain RHB30-C07 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3821257 29 100.0 32 ............................. GAGCATTATATTTATTCGACGCTGACAGGCTC 3821318 29 100.0 32 ............................. GAGGCGTATCGCAGTGAATGAAATCGACCCAC 3821379 29 100.0 32 ............................. ACACGGGCGCAAAAACAATTGAACGCGCCAAA 3821440 29 96.6 32 ............................C GCGCAGGTGGACGGATTTGGACAACTGGAGAC 3821501 29 100.0 32 ............................. ACCCTGCCTCAATATTAGCTGTGCTGGATAAT 3821562 29 100.0 32 ............................. AACGCGCAACAGAACGCCGCCACGCCGTGCGC 3821623 29 96.6 32 ................T............ ATTTAAATCGCTATGCGCGTGATGTTATTAAC 3821684 29 100.0 32 ............................. GAACTGTCCGAACGCATTACGGGCATCGGAGA 3821745 29 96.6 32 ...........................T. ACGACGACGGCACACGAGCGGTTAATCCCGAC 3821806 29 96.6 32 .........A................... TTGGCGAGATTGTTAACGTTGCGATGTCTCAA 3821867 29 93.1 32 ................T.A.......... GCTTCAGATACATATACTTTAAGTGCAGCGCT 3821928 29 75.9 0 ........A..T...A.AC.A....T... | ========== ====== ====== ====== ============================= ================================ ================== 12 29 96.3 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGGATGAACTACTGGCAACGCTGACCGATGATAAACCACGAGTCATTGCACTGCAGCCAATTAGCCAGAAGGACGATGCCACACGTTTGTGCATTGAAACCTGTATTGCGCGTAACTGGCGTTTATCGATGCAAACACATAAATATTTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCCACTCATTTATATTCTTTGTCGCCTCTGAAAAAACTCCATTTTGCCCATCCTGGACTAATCATTATCATTCTCTACAAATTCTCTGGCGTTAATTTTTCGTTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTGGGTATAGAGTTATTTTAAATATTTACTTTTTTAATCAATGGATTAAGTGTTCTTTAACATAATGGATGTGTTGTTTGTGTGATCCTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : GATAATATCGACGATACCAACCTAATATTATCAAACGTAAAAATTCCAATTTAAGAGGAAATTTAATGTCTACGTTAATGGAAAAAGAATGCCTCCTGAACGGCGTGAGTCAAAATATTGCATTTTTATCAAAATTATCTGAAATGGTTTACAACTCTCAGAATGAAGAGTTGCAACATGAAATATATGAATTGGTGAGTTATAAAGATTATCTGTACTCAACAGGCCATGAACTTGTTGATTTTCAAGAGGGAGTATTACGATTTCAGAAAATTAGGATAAAATACAGACAAGAGCTAAAAGAACTCGGTTATCCTGTAGGTAATTAATAAATATTGTCTTTATGGTTGGAAAACGTAATTTTTTATATTGTAAATATTAGATTAAAACAATAAGTTAATATCATGCTTTTACTTTTATTCTCGATAATACCTAATTTCATTAAATACGTTCTCCTGTAAATGTAAACCGGGCATTTTTCCGCCCGGCCTTCCCCGATT # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3836916-3838409 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP057311.1 Escherichia fergusonii strain RHB30-C07 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3836916 29 100.0 32 ............................. TTTACATCAATGAACAGATAGTTTTTACGCTG 3836977 29 100.0 32 ............................. ATCATCATCACCGATGTGCATTCCGATAGGAT 3837038 29 100.0 32 ............................. AGACTGGCGGCAGCGATAATAAATACATGAAA 3837099 29 100.0 32 ............................. ATTCCCTGCTCGTAATACGCGTCGTATAGCGC 3837160 29 100.0 33 ............................. TAGCGCTTTGCGGTGTCCTCCAGCGTGGTTTGC 3837222 29 100.0 32 ............................. GTCGCGGTTGCAGTGCTGTCTTTCCCAGCTGA 3837283 29 100.0 32 ............................. GTCAGTTGCCTGATTTCGCTGGCAAAACGTGG 3837344 29 100.0 32 ............................. ACGTTAGTAAACAGCTCGCAGCACAACGCGGT 3837405 29 100.0 32 ............................. CTATGAGGCTGAACGAAACGCCATCATGCTGG 3837466 29 100.0 32 ............................. AGCAGGGCAAGGTTCGCCCGATGTACACCCTG 3837527 29 100.0 33 ............................. CTGATTATTGCGCGTGAATTACTGGAGCATGGC 3837589 29 100.0 32 ............................. AATCACTGCGCGCTCAGATTGCCGAGGTCACC 3837650 29 100.0 32 ............................. GTTTCAGTTGTGATATTTGAAGCGGAGTTGAT 3837711 29 100.0 32 ............................. AGGAAAACGGATGATGGAAACCCGTCGCCTGG 3837772 29 100.0 32 ............................. AGCGCGAATTATCAATCATTCAAGCGATCGGT 3837833 29 100.0 32 ............................. GGAAGCATTGCTTTTGCAGCGTCTTTCCGATC 3837894 29 100.0 32 ............................. GCTAATGCAACGTGGTTTTCTGTGCTGGATAT 3837955 29 96.6 32 .........A................... AATTTTACTGATTCAGCAGGGCAAATGAAATC 3838016 29 96.6 32 ...........A................. ACGTTTGCCAGTAATTTGGCTCGTCATGCAAT 3838077 29 100.0 32 ............................. GTTTTTGCTGCTGCCAGATTACCGAATATAAC 3838138 29 100.0 32 ............................. TTTGGTAGGAAAAAATATCACTGGTATATCTA 3838199 29 100.0 32 ............................. CGGATATCGTCGCCGGTGGGGCGCTCCCAACC 3838260 29 100.0 32 ............................. CTGCTCATTGCCATTGCCCCAGCAATACCAGG 3838321 29 100.0 32 ............................. GTAATGCACTCACCACGGTTACAACAGATATT 3838382 28 86.2 0 ......................-.CT..C | ========== ====== ====== ====== ============================= ================================= ================== 25 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGGCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACATTGGGCGATATCGGTCACCGGGGGCGCGGCGGGTGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTCCTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCCCAACTGGCAGGTTGCGGAAATGTGGTAATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAGTTTCAGACCTGGGGTGAGAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGAAATAAAGTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : CAACTCCCATTTTCAAACTCCTCAAGACGCCTTCGCCAACTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGCGCCTTATCAATATGCTGTTGATTATCAAGCCTTACATCATGCCAGCTATTTCCCGCCGGGAAGGCCGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTTCCAAGATTCCAGTTGGTCGCCTCCACCGAAAGTACCGCAATACCGGCTTTGTCGAAAACTTCTGCATCGTTACAACATCCGGTGCCTTTCGGATAGTTTTTATTCAAACCTGGATTTGTTGTCGCTGCAATCCCATGATTACGCGCAATTGCCAGCGCTCGGTCACGGGTTAATTTCCTGACAGCTTCTGGTGTATTTACGCCACTATTAAAATAAAGCTTATCGCCCACGATCAAATTATCGAGATTAATCACCAGCAGGGTATTTTTCTTTTCAGTATCGCTCATGCGCT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //