Array 1 274236-275606 **** Predicted by CRISPRDetect 2.4 *** >NZ_RRFZ01000001.1 Escherichia coli strain FWSEC0108 FWSEC0108_contig00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 274236 29 100.0 32 ............................. GCTATCGCAGCAACACCCCAGCAGGAGCACAC 274297 29 96.6 32 ............................T CCCACTTCCCGCGCTCCATATCGATGATATAC 274358 29 100.0 32 ............................. AAAAGGGCCGCATTGACGGCCCTGTGTTATCG 274419 29 100.0 32 ............................. TTAGCTGTTAGCCAAACATGTCGACCTGTTTG 274480 29 100.0 32 ............................. GGGTGGCGGTGGTGCTGTAATTCACACCGGTA 274541 29 100.0 32 ............................. TATTCCCCCAGTCACCCCCGCCACCAAAATCA 274602 29 100.0 32 ............................. ATTTTTCAGACTCATCAAAATAATCCTTTAAT 274663 29 100.0 32 ............................. CATTGCCTTTGCAGCGTCTTTCCGATCATTCA 274724 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 274785 29 100.0 32 ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 274846 29 100.0 32 ............................. CTCTGTCGTTTTCATATTACCGGCCTGCCACT 274907 29 100.0 32 ............................. GCCAGGAATGCAGCATTTTGCATGGGAAATGA 274968 29 100.0 32 ............................. CCGATATTTTCCTGACGTCGAAAAAAGAGGAC 275029 29 100.0 32 ............................. CTGGGCGAGGGAGAAACGCCAGCGGAGCAGTA 275090 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 275151 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAGTCC 275212 29 100.0 32 ............................. ACTGGTTCTGTAACCCAAATTTGGGATCATTC 275273 29 100.0 32 ............................. ACTATCGGCGCTGTTCAGTTGGGACAGAAACA 275334 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 275395 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 275456 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 275517 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 275578 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 301307-301762 **** Predicted by CRISPRDetect 2.4 *** >NZ_RRFZ01000001.1 Escherichia coli strain FWSEC0108 FWSEC0108_contig00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 301307 29 100.0 32 ............................. GGCGTCATCATCAAACAGGGCGTCTAACAGCG 301368 29 100.0 32 ............................. ACTATATATTTCCTCAACGAGTAATTTTGAAT 301429 29 100.0 32 ............................. GTTTACCGCCCCGCAGAGGCGCTGGCAGATCC 301490 29 100.0 32 ............................. GGATGACCTGTCGCTAAAACTCGCCGCGTACA 301551 29 100.0 32 ............................. TCCGTTTGGTCCACCAAATGTTTGATGCTTCA 301612 29 100.0 32 ............................. TTCAGGGTGTGATTCCGCATACCAAGCAGTAA 301673 29 96.6 32 .A........................... GGCGCACTGGATGCGATGATGGATATCACTTA 301734 28 72.4 0 .AA........C..T....A..-.C...C | T [301753] ========== ====== ====== ====== ============================= ================================ ================== 8 29 96.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : CAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAATTAAGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTTTCGGTGTCACTCATCCGCT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //