Array 1 533759-532686 **** Predicted by CRISPRDetect 2.4 ***
>NZ_CABWTG010000008.1 Klebsiella pneumoniae strain ZKP32 isolate ZKP32, whole genome shotgun sequence Array_Orientation: Reverse
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================ ========================================= ==================
533758 28 100.0 33 ............................ TCGGTCGTCGGCTATAAGTACAACATCGGGCTG
533697 28 100.0 33 ............................ TTCCGGTTACTATTAACGCAGGCGACACCGGTC
533636 28 100.0 33 ............................ TTCCCGCCCGGAGAAATTTAAATATTGCTGGAT
533575 28 100.0 33 ............................ CGCAGGTTGCGAAGTACAAAGAGAAATTCGAGC
533514 28 100.0 33 ............................ TGTCGCTGTAGTCGTAGTGTCTCATGATGCGCC
533453 28 100.0 33 ............................ TGGTGCCGCCGCCGGTGGTCAGAGTTCGACTTA
533392 28 100.0 33 ............................ TACCGAAAAGGCGCGGGCCATCGATCCGTTTTA
533331 28 100.0 33 ............................ TCCCCTGATCGCTGATTGCCTGCGCGAGTTCGC
533270 28 100.0 34 ............................ ACTGGCTATCGCAGGCACGTTTGGCATTACGCAG
533208 28 100.0 33 ............................ CGAGTCCTGTAAAGAGCACGGCGATATGCTTGG
533147 28 100.0 33 ............................ TTACGAAAACGCCGCCATTTATAAAACGATGTT
533086 28 100.0 33 ............................ CCATGGCGGAGATAGAGACACTATTGAGTGAGT
533025 28 100.0 33 ............................ TCGCAAAAGGCGTGTATATCAATATCGGCAAGC
532964 28 100.0 33 ............................ CGGAGTGCGCTCGCATACTCACCCTCGGCAGAT
532903 28 100.0 33 ............................ CTTCACGCCGATGGAGCGGTCTTTCTGCGTCGA
532842 28 100.0 33 ............................ TATTTCGGAGTGGCCCAACGACGCCGCCGTGTG
532781 28 100.0 41 ............................ TGGAATCCACGACGCGCCGTACCAGCGCGGGCATTCGTTCT
532712 27 85.7 0 ......A...T.T........-...... |
========== ====== ====== ====== ============================ ========================================= ==================
18 28 99.2 34 GTCTTCCCCACGCACGTGGGGGTGTTTC
# Left flank : TTTACAAAGAACGGCTCTGTATTGATTTGGCATTTTCACTCTCGAGGGAAATGGCGGGCCGCTACGATAAACACAAAGTCTCTGAGGCATTCAGAAAGCGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTCCGTGGACGAATGAAGCTGTGGTTTGTCGAACCGCGGCCAAATGTTTTTGTCTCAGGCGTCAAAGATTCGGTCGCACAAACCGTTGTTGATTACCTGTTGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGATCTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAACTCTCGCTCTTTCACAATATGTTGGT
# Right flank : TTGTGAGGGGTCTACCAGCATTGGCGTACTGGAGTCTTCCCTACACATGTGGGACTTAGCAATAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTAAAATAATTTTTAGCTAATGAAACTGTCGTTTGGTAGAGGTAGGAATATTTTATTGCGATAGAGAAGGGAACTGTTTAAAGCAATAACGGCGAATGATTCTTATAAAATGAAGGATAGGAAATTCATATGTTTCGACTTTACCAGTCACATGATTTAATACGCCAATTAAATCCTGAAGACTTTCAATATATTTTGACACCAGCAGGTTCGCTAAGAGAAGCGTGTATACATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCTTTTGGCCTACCGAAGGAAATATACAACTCATCTCCACATAAAAGGCCATATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTATGATGAGGTAGAGCACAGGCTACAAATTGGCTG
# Questionable array : NO Score: 6.22
# Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37
# Reference repeat match prediction: R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37
# Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41
# AT richness analysis in flanks prediction: R [46.7-63.3]%AT Score: 0.27/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: R [0.37,5.55 Confidence: HIGH]
# Array family : I-E [Matched known repeat from this family],
//
Array 2 543150-542512 **** Predicted by CRISPRDetect 2.4 ***
>NZ_CABWTG010000008.1 Klebsiella pneumoniae strain ZKP32 isolate ZKP32, whole genome shotgun sequence Array_Orientation: Reverse
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================ ================================= ==================
543149 28 100.0 33 ............................ CGGGTCGCCGGAATCCTGCTGCGGCGTGTCCTC
543088 28 100.0 33 ............................ TGTTAAATTTTGCGCTTTTTATGCGTAAAACTC
543027 28 100.0 33 ............................ TCAATGAAGCTGCGCCGCGCCACCCGCGAGACG
542966 28 100.0 33 ............................ CGGCGGGCCTTATGGGGAGGGATTAAACCTGAT
542905 28 100.0 33 ............................ CGGTACTTCTGCCATTGTGCATGTCGCCCTATA
542844 28 100.0 33 ............................ CTTGTTCGGACCCCTGGGCCTTTCCGCCCTTCG
542783 28 100.0 33 ............................ TCACCCTGTCCTGCTGGACGTGAAGAAGGTTGC
542722 28 100.0 33 ............................ TCGGCTATTTCTATAAACGAGCTGAGCGGAGGG
542661 28 100.0 33 ............................ TAACCCAGATGTTTTCGATAAAAGCGAAGCCGA
542600 28 100.0 33 ............................ CGAAGATGTTCATCCTGACGATAGCAAGAAAAT
542539 28 92.9 0 ...................A.......T |
========== ====== ====== ====== ============================ ================================= ==================
11 28 99.4 33 GTCTTCCCCACATGCGTGGGGGTGTTTC
# Left flank : TTAGCGTTGGCGAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGACTCGACGGCGCAGCGCAGGATAACAGCCTCCAGCTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGTGGAGGATGTGTGGATTTTTCCGCAGCGGTAACTTCGCGAAGCCACGGAAGGCAAGCGCCAGGATGACGCGCTACGTTCTGGGGATGACAAAAGCGTTTTACCCCCGGCTGCGGGCCGGGCAGGCCAGTAGGGTAGACCGGTCCAGGTCAGCAGCAAGTCGACGGTGGTGATATGGGGACATACTTTTTCGTTTGATAAATGTTGATGCTGATGCGGAAACCCTGCGGAGTGCAACTATCGTAAATCTGGTATTTTAATACGCCGCTAGACACAATATGCTGGT
# Right flank : CGCCTTTCAAGTGTCGACAAGTAACGTCTGTGCGCATTTCTCAGATGAAAGGGGATTCCTGACGTAGAGGCATCAATGCCGTGATATAGTTATCCTTAATGTACATCAATGTCTTCGAAATTTCGTTTGGCCAGCACAGTCTCATATGTTTTTTGAATGATTTTACTTATAAATATTCGTGAACTATGTTTGTCCTATACTTTCTTTAGGGGCATCTAAATCATTCGAGTTTATTACTCGTCTGGAGATATTGTTCTTCATATTAATTATTTATAGCTTTTTATATTATTATTTTTGGCTTTTATCTTTAATTCAGTGTGTTGTGGATGTTTTTGATTTTATAAAAAGTTATTTATAAGTTTCCCGGTTTTTAGTATTAATAAAGGGCACATGTTTTTTAAGGAAAAATTCCATGAGGCGCTTGATCAGGGTTTCGCTACAAAATCAACATGCCATCGCGGCGATAAGTTTTGAAAACTGTCCAGCGAAAACCCGGATGT
# Questionable array : NO Score: 6.23
# Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTCTTCCCCACATGCGTGGGGGTGTTTC
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: F [9,2] Score: 0.37/0.37
# Reference repeat match prediction: R [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 93% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37
# Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41
# AT richness analysis in flanks prediction: NA [51.7-56.7]%AT Score: 0/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: R [0.37,5.28 Confidence: HIGH]
# Array family : I-E [Matched known repeat from this family],
//