Array 1 64889-63885 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHKGI010000017.1 Escherichia coli strain UPMP 1515 contig00017, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 64888 29 100.0 32 ............................. TTGTGCGAACCTCAGTTATTGTGCCCTGACGA 64827 29 100.0 32 ............................. AATTTATTCGGTTTATTCCGTCGGCGCGCGAC 64766 29 100.0 32 ............................. GGGATTTGCACTCCAGTTGATTGACCCGCAGC 64705 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 64644 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 64583 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 64522 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 64461 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 64400 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 64339 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 64278 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 64217 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 64157 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 64096 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 64035 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 63974 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 63913 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1100-34 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHKGI010000005.1 Escherichia coli strain UPMP 1515 contig00005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1099 29 100.0 32 ............................. GCATTACGGTAAATCGCTGGGGCTGTCCCGTA 1038 29 100.0 32 ............................. CTGGGGCTGCACATTGACAATAAACCGCCGCC 977 29 100.0 32 ............................. ACTTGATTACCGCTATTTTCTGACGATTTAAT 916 29 100.0 32 ............................. CCTGATAATTTACGCTATTCAGCGGAGATGAT 855 29 100.0 32 ............................. TGGCTATAGTATCATATGATTTCTATTTGTCA 794 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 733 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 672 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 611 29 100.0 32 ............................. CCGCCGATTTCCCTGGCGTCAAAAGCGGTGAG 550 29 100.0 32 ............................. CTCTTTCTCAGTCATCTGGCGCTCAACGCCGG 489 29 100.0 32 ............................. GCAGCAATTGCCGGAGTTTTACTAATTGCCTC 428 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 367 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 306 29 100.0 32 ............................. GCAAATTAAGCTGGCTGGCAATCTCTTTCGGG 245 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 184 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 123 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 62 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : GTCGAAGAAGAAAGGGAAATAATGCGAGGAACGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //