Array 1 220366-219657 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNUD01000001.1 Thermococcus sp. MV11 NODE_1_length_954360_cov_19.759416, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================================= ================== 220365 28 100.0 42 ............................ TGTATTCTTTTGCGTGGATCCACCAAAAGCGTATGAGCTCAA 220295 28 100.0 46 ............................ TCCGTTGTTTTTCACCATACCTTTCAACTTCTATTGACACCATCTT 220221 28 100.0 46 ............................ GACCTCGAGCGCCTCTCCGAGGTGTTTTACCCCGAGCACCCAACAA 220147 28 100.0 41 ............................ ACTGGAAAGCCATCGAGCAATGTTTTGCTGTCATTTACCAG 220078 28 100.0 65 ............................ CCAAAGCTTGTGGGATCTACTGAAATGAACGGCAGGTTGTAAAGAGAGTACACTTGAACAGTCCA 219985 28 100.0 39 ............................ GAGCTGGACGAGTCTTGGAATAACTTGCTCTGGCAGGAG 219918 28 100.0 48 ............................ ATCGTCTGGGTAGTACCTCGGCTCAATGAAGTACTTCTCCATGAGGGC 219842 28 100.0 59 ............................ TTGCCAGAGATGTGAGAGTAAGCCTCGGTAACCGGCCACGGAGCGAGCTGGAACATGAG 219755 28 96.4 43 .........T.................. AGTCATTGAATGAGCTTCAAGTAACTCATCGCCTCTTCTTTTA 219684 28 92.9 0 ..........................GT | ========== ====== ====== ====== ============================ ================================================================= ================== 10 28 98.9 48 GTTTCAGAACCACATAATGTTTGGAAAC # Left flank : GAACGCTTTTTTCAGTCAAAAAAGCCGTAAAACAGCTTTTCGCCTTTTTACGTTACATAAAAGTAAAACCATGCACGCATTTGAAAACGGAGCGTTATAACCACTCTAAACTCCTGGAAAAGCTCTAAAAACTCACCTACAGCTGTGAGGAGCATTTTCTACTATTTTTCAGACGGGCCTCAAATGGGGTCTTCTGCGCTCTTTGTCTGGCTTTTGGGGGCTTCGCGCAGGAGTCTGGTGGAGTGGTTTCCGCTGGTTAGCCTTTGTTCTCCCTGGGGAGGGATTGGCCTGTCCCGCTGGTCCTCTCCCTGGCGTTATCTCCTCCCCTGGTTTGTTGGGGCTTTTTCTTTCTTTTTCGGTTTTCTTACTATTTTGATGGTTTGTGTTAGGAGCGTTTGGGGTTTTTGTTCTGGCGCTGTTTTCTGAACTTCTGGTAACCGCAAAATTTATATAAGAGTTTGGCGTTACTCCATTTGCCCGAAGGGGCAAAAAAGTTAACC # Right flank : TCCTATTTGCTTTTCTTGCCTAATCTCTGGGCTCTTCCTCTGCCCTGAAGGAATGGAGTTTCAAAAGAAAAATTGGGTTCTCCCATATTATTTATTTATAAAAACGAAGAGCTCACCCCACTTCCACGACGTACTTCCTGTTCCCCTCCTCAAAGCCCCTGAATGAGCCGAGTTTGAGCCCCAGCAGGGCCTTTTCAAGGTCAACGACCTTCATCGAGGCCAGGTGTGTAACGCCGCTCCCCCTTAAGAACTCCGGGAGGAGCTGGCCGGTGGGGCCCGTCAGGACGAAGAGCCTAGCCTTCTTCGCCCTGTCCAGGAGCATGTCTATTGTTCCGTTCACGAGACAGCTCGCGCTCGCTATCACCGCGTCCATCTCGGGGAGGAGGTGGTACTCAAGGGCGTCGCTGTAGGTGTCCCTGTCCCAGAGCTTGGCGTTCCTCTCGAAGACGTACACCCTGTGCCCCTTCTCGCGGAGCTCCCTTACCAGGGGAGGCATGTTC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.34, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAACCACATAATGTTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 233317-232687 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNUD01000001.1 Thermococcus sp. MV11 NODE_1_length_954360_cov_19.759416, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 233316 29 100.0 39 ............................. ATGTCCATGACCTTGAGGAAATGCCTGCCCTCCGCCAGG 233248 29 100.0 37 ............................. TGTTGAATGAGGACTTTAAGAGGGAACTCATAGAAGC 233182 29 100.0 39 ............................. TCTGGAGAGGCCTTAAATTCCGACTAAAGCTGTATCTCT 233114 29 100.0 37 ............................. CAGTGCGGCCGTTCGGTGCCTTCGGCCAGTCCAATGC 233048 29 100.0 37 ............................. ACTCGTTCCGCCCGTTCACGGCGTTCCAAGAGAAGAT 232982 29 100.0 37 ............................. CTCAAGGAGCTTTACAACACCACCGAGAACAACGTCG 232916 29 100.0 38 ............................. AGTTAGAATTCCTCGAAAAGTCCAGGACGTTTATATAT 232849 29 100.0 38 ............................. ATGATATCCATCAACTCACTATACCTAACAGCACCCAA 232782 29 100.0 38 ............................. GAAGAGGCTCACTTCGGGCGAAAGCGGGGGCGAGCGAG 232715 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================= ================== 10 29 100.0 38 GTTTCCGTAGGACAGAATTGTGTGGAAAG # Left flank : TAGCACCGAACCGATTGAAACGCTGTTAAATCAGTTTGAACCGCCGATTGGCTTTCAGTCTTGTTTGTTCCCTATATCCAATCCCATAACTCTCCATCTATCGCCAAGAGGCCCACCAAATCCGTTCTTGATTCTTGATGAGAACGACGTCGAAGGGTTTTGCGAGTGTAAAATTAAATCGTGCTTTGAGTGCTCTGGAGGGTTTGTGTGTGGTTTAAAGCATTTTTATGGGAGTTTGAATGGTCAATCGGGTTTAACGCGGGGTTTTATTCTCCCTGCTCTTGTTTTAACCCGTTGAAACTCCTGAAAGCGGTTTCGATTTTTTCTTTTTGCTTTTGGATCATTGTAAGGCTCTCTTCGGGTGAAAGCAGTCCTTTCGACGTTTCCCTATTCCTGTGCCGACTTTATAAATAGAATGCGGTGACACGAGTTTTTAGAACAAGGTTTAAATAGCGGTGAAGAAAAAACTTAAAATCGAGAACCCGGGGAATTCCCGGAGC # Right flank : GGAGTCGTCGCGACGATCGCCCAGCTAGGGCCAGACGGTTTCCGTAGAAGTGGTGCACGGTTGTCGCGCTGTGTATACTCCCAAAAACCTTTTCTGAGAAACTGCACATTGTGGGAATGACTTCCAGCGACCCTATCCGGGTGATCTAAATGGAGGTTTACAAGGCCAAATTCGGCGAAGCAAAGCTCGGCTGGGTCGTTCTGGTTCATGGCCTCGGCGAGCACAGCGGAAGGTATGGAAGACTGATTAAGGAACTCAACTATGCCGGCTTTGGAGTTTACACCTTCGACTGGCCCGGCCACGGGAAGAGCCCGGGCAAGAGAGGGCACACGAGCGTCGAGGAGGCGATGGAAATAATCGACTCGATAATCGAGGAGATCGGGGAGAAGCCCTTCCTCTTCGGCCACAGCCTCGGTGGTCTAACTGTCATCAGGTACGCTGAGACGCGGCCCGATAAAATACGGGGATTAATAGCTTCCTCGCCTGCCCTCGCCAAGAGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCGTAGGACAGAATTGTGTGGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [35.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 3 250488-249393 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNUD01000001.1 Thermococcus sp. MV11 NODE_1_length_954360_cov_19.759416, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 250487 29 100.0 36 ............................. TAGTTTGTTGCTCCAGTCCTTCATGTATCGCCGAGC 250422 29 100.0 36 ............................. AACTCAAAAATATGAACCCGCGCTCTGCAATCGTGA 250357 29 100.0 38 ............................. AAGACACGGTTTCCAAGGTCTGGGATACGGTGAAGACC 250290 29 100.0 37 ............................. GGGGTGTTACGCGGGTCCTTCCCAATGGGACCCGGCT 250224 29 100.0 38 ............................. ACGGGTCAGGCTCTGACAGGCGTCACGGTGAGCGAGAA 250157 29 100.0 37 ............................. ATGTAACTCCGAATCCTCCTACGAGCCCTCTGCGGGC 250091 29 100.0 38 ............................. TCATCTCAACAAAACTAACATCACCCTCATATACAACT 250024 29 100.0 39 ............................. CGGGTCTTCTCAGCCCACTCAAGGTCGCGGAAGTCTAGA 249956 29 100.0 37 ............................. TCGTTGTTCACACCCTCGGCCTTTGCTTTGAGGGCCT 249890 29 100.0 38 ............................. AAGAAAAAGCGCGAGCTCAACGAGGAAATCCTCAAAGA 249823 29 100.0 37 ............................. AACACTACTGTCACGCGCCTCACGCCTGACTGACGTG 249757 29 100.0 37 ............................. ATGTAGATGCTGATGCTCCTAATGTGGACGTATGAGA 249691 29 100.0 36 ............................. AACGTCTTCATAAACTCCTCGATCGTATCAGTCAAA 249626 29 100.0 39 ............................. ATCCTAACCTCATTATCCCCAACAGTCCAGGCACTGGGT 249558 29 100.0 38 ............................. ACAAGATTCGCCTTGCTGCGGTGATTCAGAACCTCAGT 249491 29 100.0 39 ............................. TCGATGAGTATGAGCTGTTGCGGTTGCTTTTGAAATACA 249423 29 86.2 0 .........................CCTC | A,C [249395,249397] ========== ====== ====== ====== ============================= ======================================= ================== 17 29 99.2 38 GTTTCCGTAGGACAGAATTGTGTGGAAAG # Left flank : TAACACCGCTCCAGGATTTCTCTTTTTCTACCGGTTTTTACAACTGAAAACGCGATGACAACGATTTGATTTTGGAAAGTGTGGCTAACTAGCCTTTATCACCTCCAAAATCCCCAAAACGGGTATTTGAAACCTGTGTGAGAAATTTATCGAAAGGTTTTACACATGTGAAACAAAATCGGAATCCGGGGAAAGGTGTAGCTCCAGACGGCAAAGGGGCCACAAAGAGCGGAGTTTAGATGGTAAAGCGGATTCAGAGCGGGGCCAAATCCAATTCTACTGGAGAATACCGGATTAACTCAGATAAAAAGGTTTTCGATTTTTTAATCAGGGATAAAAAGTCCAAAGATCCTTCTGTATGGGAAACGGGAGCTTTAACGCCTTTTTCATTTCGTGTGTCGGATTTATAAACCAACTGCGTTGCCACAGGTTTCCAAGACAAAGTTTAAATAGGAGTTGAAAAACCAGATATTTTGAGGATCCGGGAAAGTTGCCCGAGG # Right flank : TCGGCGTTTTCTTTTCTTTTGCTACGTGCCCAACGGCCCGAACAGCGCCTGTGGGTGATCCCATGAAGCGTCCGGTTTACATAACCCAGATGGGCGTCCTTGAAAGGAGGGGCAACACGCTCTTCATCGAAAACGAGAACGGAAAGAGGGCCATACCCATAAACTCCACCAGCGAGATACACTGCTTCAAGCCCGTCAGCCTGACGAGCGGGGCGATAAAGCTTCTCTCCGAAAAGAACGTCCCGGTTCACTTCTACAACAAGTACGGCTACTACCGGGGTTCATACATGCCGGTTGAGGGACAGGTGAGCGGTACGGTTGTGGTGAAGCAGGCGGAGCACTACCTCGATACCGAGAAGAGGCTCTACATAGCGCGACAGTTCCTCGAGGGGATAAAGGCCTCGATGATTGCCTTCCTCAGCTCCCGGCGGGCGGAGCGGAGCACGATAGAGGGAACGGAGGTTGAAGGGGACAGCCCCGCGGAACTGATGGGCGTCGAG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCGTAGGACAGAATTGTGTGGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 4 255266-254973 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNUD01000001.1 Thermococcus sp. MV11 NODE_1_length_954360_cov_19.759416, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 255265 29 100.0 37 ............................. AACCGCCTTGGTAGTGTTAGCGATGCCGATACGGCGA 255199 29 100.0 39 ............................. AGGCCGCTTATGCTAAGGGTGTAGGTCGTAGTATCGGGT 255131 29 100.0 35 ............................. TTCTGCTAAGCTGATTGGGATGAGCACTTCGGCGA 255067 29 100.0 37 ............................. ATCAGGAACAGGCCTGCCAGGAACATGAAAAACAGGC 255001 29 89.7 0 ...............A.C...A....... | ========== ====== ====== ====== ============================= ======================================= ================== 5 29 97.9 37 GTTTCCGTAGAACAGTGTTGTGTGGAAAG # Left flank : GTAGCATGCCGAGGAGATTTGGCACCGACCGATTTTCCTTTCTAAAAATAAAGCTCTGTTCACCCTTATCCCATAGAGGACGGAATTTGAAGGGCTCTCCCCAAGAATCCAAGCTCCCCAAGCAGAATACCTTCTGTGATTATCCCTGGAGTGGTAAGTCCCATACAGATGCATACGTTTTCCAAAGCGCCGGGAACAACGCCTCTTCAGCACGACAGGAGGATTTCGGGACAGATTAGATAGTAAAGGAGCCCTGCTTCTGGCTTTAATGGCTCTTGGAGGCGTTAACAGATGACAATTCCAAAACAGAAGGTTTCGATTTTCCCATCGTGTGAGACATTGGCCGAAAATGCCGAACCAGTGAAAAGAAAAATGGAGGTCTCTCCGCAGTTTTTGTGCCGGCTTTATAAATAGAATGCGGTGACACGAGTTTTTAGAACAAGGTTTAAATAGCGGTGAAGAAAAAACTTAAAATCGAGAACCCGGGGAATTCCCGGAGC # Right flank : TAGTGTTACTCGTAACCAGCGTGTGGATTGTTGAGGTTCCGCCCCGGTTCCCTAAAGCTAGCGCGCGGAAGCCGGCTCTCACGCCGGGTTGGCATTACTGACATTTTCTTCATGTTTTATGTTTAGTACCGCGACCGGTATGGGAGTGAAACTTACAAGCGGTTCAAAATCTTTATAAGTGCCAGTGTTGTTTATCACTCTGTTAGCGTTCCAGGGTGTGCATAATGCGGCTGAAAATAACCCTCGAGGGCAACAATGGGGTGCCATATCAGCCCAACAAGCACGCTGTCCAGGGGTTCATCTACAACATGTTGAAGGACACGGAGTATGGAAAACGCCACGACGAGCCGAGGTTTAAGTTCTTCACGTTCTCGGACTTCTTCAGGGACAGGGAGGGGAGGCTGACCTTCCTCGTGTCTTCTCCGGAGAGGGGCTTCATAGAGACACTTTACTCGAACATCAGGGGTAGGGACCACATCTACATCGGCAAGCACCAGCTG # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCGTAGAACAGTGTTGTGTGGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 5 406395-406811 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNUD01000001.1 Thermococcus sp. MV11 NODE_1_length_954360_cov_19.759416, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================================================== ================== 406395 28 100.0 45 ............................ TACTTCAAAACCCCCCACGTCACCATCCCAGCCATCAGCACGGGG 406468 28 100.0 40 ............................ TATCTAACAGACTCGACTTCTATGATTTTCTTGATCCCGT 406536 28 100.0 67 ............................ GGGAAGTAAAAATAGAAAAATCACTCGAGAGGGATCACGTCCCCCGGGCTCTTGCCCGGGGTGTGAC 406631 28 96.4 46 ...............A............ GGGGGAAAAACAAAGGCACGGAGGAGTGATCACTCCTCCTCATCCT 406705 28 96.4 51 ...............A............ CTGACCCAGAGAACCTCGTCACCCTCGATAGCGACGCTGACGATCTTTGAA 406784 28 89.3 0 ...............A.........CG. | ========== ====== ====== ====== ============================ =================================================================== ================== 6 28 97.0 50 GTTTCAGAACCACATGATGTTTGGAAAC # Left flank : AACGCTTTTTTCAGACAAAAAAGCCGTAAGACAGCCTTTCACCTTTTTACGTTACATAGAAGTAAATCCATGCACACGTTTGAAAACGGGGCGTTATGACACCTCTATAACTCAAAAGAAGCCTTAAAAATTCCCCTACAACTGTGAGGAGCATTTTCTACTTTTCTCCAGACTGACCTCAAACGGGGCTCTCTATTACCTTTGTCTGGCTTTTGAAGGCTTTTCGCGGGAGTCTGGTGGAGCGATTTCCGATGAACGGCGTTTGTTTTCCCCGTGAATTGTTTAGCCTGTCCTGCTGGTCCTCCCCCTGGCGTTATCTCCTCCCCTGGTTTGTTGGGGCTTTTTCTTTCTTTTCCGGTTTTCTTACTATTTTGAATGGTTTGTGTTGGGGGCGTTTGGAGTCTCCCTTCTAGGGTTGTTTTCTGAACTTCTGGTAACCGCAAAATTTATATAGGAGTTTGGCGTTACTCTATTCGCCCGAAGGGGCAAAAAAGTTAACC # Right flank : CTAAAATCCGGGGTATCGGAGATGGGGCCTCAAGCGCCCCCGTGGGAGGTTTGGTGTGTTCTGGAAGCTTTCCAGGTGCGTCGTGGCCTCGAAACAAAAGGGCGTCTTCTGGCGGTGGCGGGGCCGAGTCCGGGCTCCGGCCACCGCAAAAGGCAGAGCCAGGTAGCCTCAGAGCCACTTCCTGTCCCCGACTATGTTTCCTAAAAACCTCTCTCACGGATTACAACTCCGCTGAATTGAACTCATAGCCCTGCAATTTTGAAGTCGGGAACGATTTTCCTTAGGTTCTTCGCACCAACCCGGACCGAAAAACTTTTTTATCTGATGCACCGTAGGAAATATCCGTGTCCCATTCAGGTGATCAATGCACCGTTCAGTTGGGCACTTCTGCCGCCCGGCTATGGGGGTGATGACGGTTGAAGCAGGACGTCGAAACGCTGGCCCTCGCCGCCGCCCTTCTGCCACTGGGCAGGGTGCTGTCGAGGGCGGGCCGCGGTTCC # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.54, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAACCACATGATGTTTGGAAAC # Alternate repeat : GTTTCAGAACCACATAATGTTTGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 6 415499-415829 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNUD01000001.1 Thermococcus sp. MV11 NODE_1_length_954360_cov_19.759416, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ==================================================== ================== 415499 28 100.0 47 ............................ TGGGGATTCTAATAACTTCAAAACCCTGGCTTTTCAGGAGGGGCACG 415574 28 100.0 48 ............................ AGGTTAAGATATGGTAAATTATCTTTACTTTTTCCCCATTTTCTGGGT 415650 28 100.0 52 ............................ CCCACATTCATTTTCATACACCTCCAAAAACTTGTCTTTGTTCATACACGAT 415730 28 100.0 44 ............................ TCACGCCTGCTGTACTTCTGGGTCAGATAGTGGAGCCACAGATC 415802 28 96.4 0 .........................G.. | ========== ====== ====== ====== ============================ ==================================================== ================== 5 28 99.3 48 GTTTCAGAACCACATAATGTTTGGAAAC # Left flank : TTCCTCCCCTGAACGCTTTTCTCGGCCAGAAGAGTCCTAAAACAGCTTTTCGCCTTTTTACGTTACATAGAAGCAAAGCCATGCACGCGTTTGAAAACGGGGCGTTATAGCACCTCCACAACTCAAAAGAAGCCCTAAAAATTCTCCTATAGCTGTGAGGAGCATTTTCTACTGTTTTCCAGGCGGGCCTCAAACGGGGTTTCCTACTACCTTTGTCTGGCTTTCGAAGGCTTCTCGCGGGAGTTTGGTGGAGTGATTTCCAGCGAGAAGTGCTTGTTTTTTCAGCGGACGGTTTTGATTGCCCTGCCAATGGTCTTCCCGCTTGTGCACCCTCTAATAAGTTTTTCGGGTTCTTCCATTTCTTAGACATGGTTTTTACAATGGTGTATAGTTCGGGAGGAGTGTTTTGCACTCTTTTGGCTGGCGGTCTTACGTAACCGCAAAATTTATATAGGAGTTTGGCGTTACTCTATTTGCCCGAAGGGGCAAAAAAGTTAACC # Right flank : CTATGGGTGGATACTGGGGTTCTTTGGGCCTTCCTACAAATTTGAGGTTTCAGAACCACATTTACCCGCAAGGTTTTTATCCCAGGCTGTGCACCCTTTTTAGACCGGGGGGAGCATTGTGAAGTGCCCTCTCTTCATAACCGACCACGGGAGGCTTGAGAGGCAGTCCGGTTCCCTCGTCTTCGTCGGCAGGCTTGAGAAGAGGACCATACCCCTCGCCCAGGTGAGCGAGGTTCACTGCCTCGCGAGGGTTTCCCTGACGAGCGGGGCCGTTGAGCTGCTGAGCGAGAAGAGGATTCCAGTTCACTTCTACTCCACGCGGGGCGATTACAGGGGCTCTCTGATAAACGACGCGTCCCCGAGGGGCAGGCTCCACCTGGCCCAGGCGGAGCACCACCTCGATCCCGAAAAGAGGCTCTTCATAGCCCGGGCCATCGTCCAGGGGCATAGACCGAAAAGTTTATAAACCCCAAACTCACCATATCTCCCGCGTTTCAGAA # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.12, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAACCACATAATGTTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 7 487591-488359 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNUD01000001.1 Thermococcus sp. MV11 NODE_1_length_954360_cov_19.759416, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 487591 30 100.0 37 .............................. GACTATGATTTCTGGATAATTTTCTGTGGAGATGTTT 487658 30 100.0 39 .............................. CGCGAGCGAGCGCGTGGGAGCGACGCACTACCTGAACAA 487727 30 100.0 37 .............................. TCATTGAGCCCCTGACCTCGGGCTGGCGCGTGCTCCT 487794 30 100.0 37 .............................. AGGGTGTAGGTCTCGGCATTCCATTCCGCTACTCTCT 487861 30 100.0 37 .............................. ACGCGTGTATACATTGACGGCAAGGTGTACAAGGTCA 487928 30 100.0 38 .............................. CCTAGCTTTCTCTTGCGCCTCGAGCATATCCTCAGCCT 487996 30 100.0 36 .............................. GGGCGTCGTGGGGACGATGAAGGGGGGAGGGGTTGA 488062 30 100.0 37 .............................. ACTGAAATAGGGGAAACAGAGGGTGAGGGGCTAAAAC 488129 30 100.0 36 .............................. GTGGACACTTTAACGTTAGCTTTGCAGGTTGGGACG 488195 30 100.0 38 .............................. TATGAGAGCCTGGTTGATGCGGTCCTAAATGGCCTTGC 488263 30 96.7 37 .............................G CTTTCTCTTGCAAAGTCGAGCAAGTCTTTGAGATACT 488330 30 90.0 0 .......................GA....G | ========== ====== ====== ====== ============================== ======================================= ================== 12 30 98.9 37 GTTGCAATAAGACTCTGGGAGAATTGAAAC # Left flank : AGTACAACCCGAGAATAAGGTACTGATCGGGTGCCATCACGTTTTTCCGCCCCCTTTTAAGCACTCCACCTTTAATCACAGTTTTCTGCCGAAACAAAGTTCTCAGCGGCCTTAGGAAACCGATTTTAGCATCTTTCAGACTGTAACTTTCTGTTGCATTCTAGTCAGCACTTGGTAACGAATTTTCTTCGAAGTTCTGAACAGGGGAAGGACGCTGTCGGGATACACTCCTTCCGTGCACAAACCGGTTCATTTTTGTCTTCCTGCCCTGCGAGAGAGTTTCCGGCGTTTTGAAACGCTGTGAACTAATGGGAGATCCCGTGAAGGTTTCTGTTCATTGGGAAGAAAACGGCCGGGGAGCGGTGTTTTGGTCCAAACGTGTTCACAAGCCCCTTGAATTCAGGACGTTTGAGGCCCCTTTTTCCGGTGGTTTTCAGAAAGGCTTAAATATTCGAGACTGCATAGGCCTTTACTGGGTGAACGGCCGGAATTCCCGCCCT # Right flank : GCCTTCCCCTGCCAACTATTGCGGGCAATGTGCGCTATAATAGGACCGGCTAGAATCAAAGCATTCCCCGCTTAAAGCCAGCCCCTTTGAGGTACGGAAATCTTTTATCAAACCGCCGGAACTTTTTTTGGTGGTTGCATGAGGGCCAGAATCGTCGAGCGCTTTAAATTTGAAGCGGCTCACGCCGTGGTCATAGATGGAAAGCCCGAGGAGCTTCACGGCCATACCTTCAGGCTCGAGGTCGCGGTTGAGGGGCCGCTAAGGAACGGCTACGTCATGGACTTCCTGGAGCTGAGAAAGCTCGTCGAGGAAATCCTTGAGGAGCTGGACCACCGGAACCTCAACGGCATCTTCGAGAATCCTACAACCGAGAACGTTGCGCTATGGATAGCCGGGGAGGTTGAGAAGCGCCTTTCCAATGGCGTAAGGCTAAAACGCATAGTCCTCTGGGAGGGCGACGAGAACGGGGTGGAGTTTGAGTTCTGAGGACTCTCTAATAA # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCTGGGAGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 8 740114-741542 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNUD01000001.1 Thermococcus sp. MV11 NODE_1_length_954360_cov_19.759416, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 740114 30 100.0 37 .............................. TTGTATAACGAAGTGCAAAGAAAAGAAAGTGTGTGAG 740181 30 100.0 36 .............................. TGAGGAGAGGATTCGGAAGCTTGAGGTTGAGCTCGA 740247 30 100.0 37 .............................. CTCTCGCCCAGACTTCGACTAACGCCGTCTGGAACGA 740314 30 100.0 37 .............................. TCTGGAACTTTCTGTCAAGTATGACGAAGAACCAGCG 740381 30 100.0 37 .............................. TCATGGTGGTGCGTTGCGGGGCGATAACCCCCCCACC 740448 30 100.0 36 .............................. TCAGAACTCATATACGGAGCCAGCCACATCGCCATT 740514 30 100.0 36 .............................. TCAGGCGAGCCTCTGCAACCGTCACCCAACCCGGCC 740580 30 100.0 37 .............................. CAAGGTCGTCGAGCAGCTCCTTGGCCAGCCAGCGCTC 740647 30 100.0 37 .............................. AAAGTTTGTGAGAACCCACCACCAAGTTCTGAAGGTC 740714 30 100.0 36 .............................. GCGAATCCGAGCATCTGGAGGAGCATCGGCACGGCG 740780 30 100.0 38 .............................. GAAATGGCGTAAACAAAGGCCACTATCGTATCATGGAA 740848 30 100.0 37 .............................. AAACGCTCGGAATGGTCTTCGGTTGGCTGGCCGACTA 740915 30 100.0 37 .............................. GAAAGATAGCCAGGGCACAGAAATATGGACTGACAGC 740982 30 100.0 37 .............................. AGCTCACAACTGCTGTACCGTGCTATGTAGTACTCTG 741049 30 100.0 37 .............................. CATTGATGACGATGAGCTGCCAGAAAATGCGGCCAAT 741116 30 100.0 36 .............................. ACGGACCTCGACAACCTACTTAGCGAGCCGGAAGAA 741182 30 100.0 36 .............................. AGTGTTTAACTTGAGTTCTCCAGTCCACGGGTCTTC 741248 30 100.0 37 .............................. GACCCCCAAGGAGGCGAGACAGTGGGGCAGGAAAGCA 741315 30 96.7 34 ..................A........... TCGAGTTCAAACTGCGGGTACTGGAGCACGGAGA 741379 30 100.0 36 .............................. CTTATCACGAGGTTTACGACGATGACGACGCCCGAA 741445 30 100.0 38 .............................. TGGTGAATAATACTAGCAGAGCGAGCAAAACCCCGAAC 741513 30 96.7 0 .............................G | ========== ====== ====== ====== ============================== ====================================== ================== 22 30 99.7 37 GTTGCAATAAGACTCTGGGAGAATTGAAAC # Left flank : ATATATATCTTTCGACCGCCCTCCCTGTGAGATTATCACGCTGAGGTGATTTTGATTTGAATTTCCTCCCATTGGTAGCGGCGGATTTTTAAAATTTCACTTTACGTGCCCCTGGAGATCGATTTTTGGGCTTTTGTATCTGTAACTTTTTGTTACGATGAGCACATTAAACTGTAACGAATTTTCTTCGAAATTCTAAAAACAAGCAGGGGGTGGTTGGAAAACACCCTTATCCCAGTGGAAACCGTTTCTTTTTGCATTTTAATCTGCCTTCGAGGTTTTTTGGCGTTTTAAGCGCTTTGGAATGGTCAGGAAATCGTGTGCACTTTTTCATACATCAGGGGATTCAGCCGGTTGAGCGGGTGTTTGAGGTGCTGCCTCCTCTTTGGCTTCTTGGATCCACGACTTTTGGCGGGCTCTTTTCCAGTGGTCTTCAGAAAGGCTTAAATATTCGAGACTGCATAGGCTTTTACTGGGCGAACGGGCGGAATTCTCGCCCT # Right flank : GGGCGGGTTTTGATTTTGGGCATGATCTTCTTATATTGATATCCTGGGCTGGATCGGGCTGTCGTGCACTATCGAATTGACAAAATCGAGGAGACCAGAATATCGCCAGGCGCCTAGTGTGTTCTAAGATTAAAATAAAACTTACTGGCCAGAAACGGACAGAAAATTTGAAAAGCGCATCAGAAGAGCCACTGGTTCTCTATGCACTCGTCGCAGGGCGGCTTTTCTCCAGCGATGGCCTTGAACTTCGTGTAGATGCACTCGGGCAGGCCGAGCGGGCAGCGCTCCGGCGTGGCGCCGGGCCTCACCTTGGTCGGGTCGAGCTTTATCCTGATGTAGGCCTCGTACTCCTCGACCTTCTTCCAGGGCAGTATCTTGGCGCCGTAGATGACGAGGTTGTCGTATATCCTCGCGTAGTCGCCGACGACGGCGTTTTCCTTGAGGATAACGTTCTTCCCGACGACGACACCTTCGCCGAGAATGCTGTCCTTTATCTCGGC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCTGGGAGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 9 825755-826526 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNUD01000001.1 Thermococcus sp. MV11 NODE_1_length_954360_cov_19.759416, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================================== ================== 825755 29 100.0 37 ............................. AAGAGGACCGCGCCCGAGTTCAAGGGTTGGGTTCTCG 825821 29 100.0 36 ............................. CGAGCTCAAGGCGCAGCTAGCGAACATGACGAACAA 825886 29 100.0 36 ............................. GTAGGTTTAGGATAACAGACTTGATGAGGTCGCTTT 825951 29 100.0 37 ............................. CTCAAGCATTTCTTCAACCGCAAGTTTGAACTCCTTG 826017 29 100.0 36 ............................. GGGTGTTGAACTGAGCGTCCAGGTTTCCGGCTATGA 826082 29 100.0 38 ............................. TTGGTATCGCACCCCTGCCTGCTGTACTTCTCCCAATC 826149 29 100.0 36 ............................. TAGCGTTGGCTATCTTCTCGTTGATGCCGTCAATCC 826214 29 100.0 38 ............................. GGCCGGTGGGCATTGAACTCCTCATATTCGACTTCCTG 826281 29 100.0 38 ............................. GAATCTCAGACAGTTGGATCCTGCGACTATCATAGAGG 826348 29 100.0 38 ............................. CGCGTCTGGAGTATTCACGTCCACGCCGCGGAGGACAG 826415 29 96.6 53 .........................G... TCTATAAAACCCCGGCGGAAGTTCGAGGGGGTGTGGGGGACGGAACGTCCCCC 826497 29 72.4 0 GGA...........C....A.C.G..G.. | G [826510] ========== ====== ====== ====== ============================= ===================================================== ================== 12 29 97.4 39 TTGCAATAAGACTCTAGGAGAATTGAAAC # Left flank : AATTTGAGGTCTCTGAATTTAACTTTTATGGCGTATCACGCCTGGAACGCTTTATTCTTTGAAACGGGTCGTTGAAGGGACCAGAACCTCAAATAAGCCCTCCCCCATGCTCTGGAAATCGATTTTTAGGCTTTTTAATTTGTAACTTTTTGTTTCATATATTTCACGATCGCGTAACGAAATATTTTCGAAAAGTAAAACCGAGCCATGATTGGGCCTAGATATGCCACTTCCTTGAGGAGATACGTCCCTTTCCCATTCTGGCATTAGGTGCAGTCTGTTCGCGAATTTACAGCCCGTTTAACCCTTTGCATTACCCTGCAGTGTCCATCGGCCCCGTGGGAAGCTCCTTTCAGGAGCATTCTTTATGTGGGTTAAAGCGCTGAAAAGGCTCGGATTCGAAGCCTGATGGGACCCTTTTTTCCATCGGTTTTCAGAAAGACTTAAATATTCGAAGCCTCTCAATACTCCAATGAGCAAACGGGCAAATTTTCCGCCCG # Right flank : CGGCACAACTGCATAATTAATGAACTGGTGGATCACATAAAAACTGAATTAACTGGTCTCAGTTGAAAGCGCCATCTCGACGATTCTCTCGAAGAGCGCCCTGTGGTTCCCGAAGGCCTCGAACATTCTTCCCGAGTAGTTCTCCGAGGCGGTCTCAAGGAAGTGCCGGAGATTCCGGCCGATCTCGTCGCTTATTGGGACGTGGAGCGGAGAGGGCTCATAGTAGTCAAGTCCCTTCATCAAGGCCGTGGAAAAGTACCAGAGCGTCTTTCTGACTTTCCTGCCCTTTATCCTGGAAAAGCTCGCCTCCATGCAGTTAAAGGCCGCGTGAAGGAGCACTATAATGTCCACCTCCACTCCCCCCTCCAGGAGCTTTTTCCTTTCCCGGTCGCCGCGGAGGTCCTTTATCCTGTACCCGCTCCTCGTCTGCTCGTCGTAGGGAACCTCGACGCCGTAGATGCCCTCGACCCTTGGGTCATAGACGAGGACGTCCGTGCCGC # Questionable array : NO Score: 9.08 # Score Detail : 1:0, 2:3, 3:3, 4:0.87, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTGCAATAAGACTCTAGGAGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA //