Array 1 2395311-2399336 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP065378.1 Faecalibacterium prausnitzii strain Fp45 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 2395311 33 100.0 35 ................................. AGCTATCCCTGCGGCGATTGCGGCAAGGAGACCAC 2395379 33 100.0 35 ................................. TTCAAAAAATCGTTCCCGCTGGGTTCGGGCCGGTC 2395447 33 100.0 33 ................................. AATCAAAATCGGAGGATAGTATTCTTGTAAGGC 2395513 33 100.0 35 ................................. CAACATCGCCCGCCTGAAAAAAGGCAAGGCTCCCC 2395581 33 100.0 34 ................................. GTCATTGCTGGCGTCCCCTTTCAAGATCCAGACC 2395648 33 100.0 35 ................................. AGGAATCTGCCGCCGCCCTCGGTGTGCTGGCCAAC 2395716 33 100.0 35 ................................. CCGAAAGGAGTGATTCATCCCATGAGCAAAGAATC 2395784 33 100.0 35 ................................. ATCGACAACCTGGGCAGTATTTTTGACAGCAACGT 2395852 33 100.0 35 ................................. TCGACCAGAGAGCGACAGTAGGAGCAGGCGTCCCG 2395920 33 100.0 35 ................................. GGCAGGGGAGTGGCAAGCCCTACTGTTCCCATGCC 2395988 33 100.0 36 ................................. ATCCGCCAGCTGGGTGAGCTTGTCGCACACAGCTCG 2396057 33 97.0 35 .........T....................... CATCTGGCCGCTCAGCCCGCGCACTGCGTCGCGCA 2396125 33 100.0 36 ................................. TTGAGCTCTTCCCAGGTCTTGATCGCCGAGGTCCAG 2396194 33 100.0 36 ................................. TCGCAGTTTGTCCTCGACCTCGATACGAAACTGGGC 2396263 33 100.0 34 ................................. TCAGGCATGTTTTTTCCTCCAAATAAAAAAAGAA 2396330 33 100.0 35 ................................. TTCCTCCAGCGGAAGAATCGACTCGCCGCTGGACC 2396398 33 100.0 33 ................................. AGGAGGAACCCATGAGCACTCAAGCGGTCTGAG 2396464 33 100.0 35 ................................. AAAAAGCAGTCACCAAATGGGGCGACGCCAGCAAA 2396532 33 100.0 34 ................................. TTCAGCCGGTCGGCCTGCGGACGCCGGACGTCGA 2396599 33 100.0 34 ................................. ACGGCTGCGTCGCTGAGCGAAGCCATCACAAAAC 2396666 33 100.0 34 ................................. TTCAAAGCCGTGCTGTACAAGGACGGTAAGGCAT 2396733 33 100.0 35 ................................. ATAAAAGAATTATCCAAAAATGATGGGTATGATAT 2396801 33 100.0 35 ................................. GGCATGCGTTTGCGTCGGACTTATATGACGCAGGC 2396869 33 100.0 34 ................................. TTTTTCCATCCGCTCCGTGAGCTTTTGCGCAACT 2396936 33 100.0 34 ................................. CTGATCCAGAAGGGTATCCAGCCGGATGGTGTTT 2397003 33 100.0 36 ................................. CGCAGCAGCCTGTCAATCCTTACGGCGGCATGGGCA 2397072 33 100.0 37 ................................. TTCTGGATATAGCCCAGAATAGACGGACCGACGTAAA 2397142 33 100.0 35 ................................. GGTCTGCGTGACGGTGAAATCTTCCGAATCTGACT 2397210 33 100.0 34 ................................. TTCACAGCTCATTTCCAATACCTCGTTTCTAAAA 2397277 33 100.0 35 ................................. ATTCTGGTCATTTCCAAACGAATGCAACTTATCAA 2397345 33 100.0 33 ................................. GCTCGTGTTGGCCTGCTTGTCCAGATCCATGAC 2397411 33 100.0 34 ................................. ATCTCGCGCGTCCTCCTTAGTAAGCCCCAAATTC 2397478 33 100.0 34 ................................. ATTTTGGTCGTCGAAGCGGAGACAAAGGCCCTCG 2397545 33 100.0 35 ................................. TCCAAGTGGTGAATGGTGCAACAAGGATTTTTGGC 2397613 33 100.0 35 ................................. AGTTTTGCGTTATGCTATCCCACCGCCGTGTGCGA 2397681 33 100.0 34 ................................. ATTGTGTCTATATATTACCATACATACGCATGGT 2397748 33 100.0 36 ................................. TTCAGTGCCGCCGGGGAGAGCTTGGTATAGTCCGCG 2397817 33 100.0 34 ................................. ATTTGTGCGCATCGGCTGCTGTAACCGCTGGTAC 2397884 33 100.0 36 ................................. AACTTCAATTTCGCCGGGGTGCGGCCCAATCCCGCC 2397953 33 100.0 38 ................................. TTGTTCACAGACTTGTCGAGGGATGCCAGCGACTGCTG 2398024 33 100.0 34 ................................. ACCCAGTGGACCGCCCTCTGGTACGTTGGCGGCA 2398091 33 100.0 34 ................................. ACGACTATTCCACGACTATTTCAGAAGCTGTTAC 2398158 33 100.0 35 ................................. TTCCCAGTAGGCTTGCGCCCTGGGACAGGTGCAGC 2398226 33 100.0 34 ................................. ATATTCTCATCAAGGAACGGCCTCATGGATTCAA 2398293 33 100.0 34 ................................. ACCTCGGACAGGTCAGCAGACCAGCGAACGTCCC 2398360 33 100.0 33 ................................. TTCCAATCTCCACACAAGACGGCATAGACATGA 2398426 33 100.0 34 ................................. TCTTCCACATGTGCAGGCAGTACGGATGGGTGTT 2398493 33 100.0 35 ................................. GCTTAATGGCTTTTGGGAAAGACAGTTCCAGAAAG 2398561 33 100.0 34 ................................. TCTTGCCCGGCGGCGGTTTTGAGCGCTAGGGCCT 2398628 33 100.0 35 ................................. TCACTTCAGAGGTCTGGCCTTCCTCATCGGTCACG 2398696 33 100.0 35 ................................. AGCTATGAGGTGGACACCAAGACCGGCCCGCTGAC 2398764 33 100.0 33 ................................. CCGTTCATCCAGACAACCGTGTTGGTTTCCTCC 2398830 33 100.0 35 ................................. CTCTGTGGTGCTGTCGATGTCGACGATGCACTCGC 2398898 33 100.0 34 ................................. GCCTCGTTGACCATGGCTTGCAGCATATTGCGCC 2398965 33 100.0 35 ................................. TTGCAAGTCGGTAGGCCATCGTCGAAAATTGCCCC 2399033 33 100.0 34 ................................. CTATGTGAAGAAAACCAACCCGCGCACTGACCTT 2399100 33 93.9 34 .....T..............T............ GTCGTCGCCTCCATTCGCAGCAAAACCAGAACCG 2399167 33 100.0 36 ................................. CACACTGGCCGTGGTGCCTACGACAATGCCGTGGCA 2399236 33 97.0 35 ............A.................... ACGGACATCGACTGGCTGGGCGTTGGTAAGAACGT 2399304 33 97.0 0 ..................A.............. | ========== ====== ====== ====== ================================= ====================================== ================== 60 33 99.7 35 GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT # Left flank : CCATTCTTCTGGAAGTGAGGTTCGTCTATGCTGGTCCTGATCACCTACGATGTCAACACTGAGACCGCTGCTGGGCGCAAACGCCTGCGCAAAGTGGCCAAAAAGTGCGTGGACCACGGGCAGCGGGTGCAGAATTCTGTCTTCGAGTGCCTGCTGGACGCCGCACAGTTTGCTGTTCTGAAGTCCGAGCTTGCCGCTCTCATCGACCCCGATCTGGACAGTCTGCGGTTTTATCAACTGGGCAACAACTATAAGACCAAGGTCGAGCACATCGGAGTTCATCCCCTGTTTGAATCCGGAGACGTGCTGATCTTCTAGCCCTCTCCCTCGGTGCGAATGGAAAGTGCTCACCCTTTTTCCGTCTCCTTCGCACCATGTTTTCAAGGCATTCTGTGCAGATCGCGGCTCTTTTTTCGGATGTTTTTGGAAAAGCTCTTCCAAATCTGTGCAGATCGTTTTATAATGAAACAAAAGCGGAGATGTTTTTCTCCGTTTTTGCT # Right flank : TGTGTCGGTGGTCTACCTGTCCGATGATCACCTGCGGTCGCCCTCCTCGCGGACGGCGGAAGATGCCGCCCGCCGGGGTGAGCACATTGGCCATCTCATTTTCCTGCACGACAGTGGACAGATACCCGCTGTGGCAGTGATAACGCAGCAGGCCGACCCGGCCGAGCTATGCTGCAAAGTGCATCTTTTAAGATGACAATTTCCTTGTCATCTCGCTTCGCTCGAATCTTATAGCTAAAGCATTTTCTACTCCACCAGCGGAGCTGTTGGTTGTCGCCCGCTCAAGCTACTCAAAACAAAAGCAAAAGGCGGCATGACCCGTTGTATGGGCCACGCCGCCTTTTGCTTCAGGGCTCGTTTGCCTGCAGCACACAGGCACAATACCCCGGTTCGGGCTGATAGCAGTGGATGGTCAGGTATTTGTCCACCTCCGGGCTGTAATCGTGGAGGGTATGCTTCGTACCGTTCAGCGCCACATCTGCATAGGACACCAGCCACTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCCCTCCACACGGAGGGCGTGGATAGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.60,-8.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 2707890-2707494 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP065378.1 Faecalibacterium prausnitzii strain Fp45 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2707889 29 100.0 32 ............................. GTCGAGGGGCCAGACCTGGGCGCGGAGATTGA 2707828 29 96.6 32 ..............T.............. CACTTCTGGTGGCAGGGCAAGCTGTACAGCCG 2707767 29 96.6 32 ............................T CATCACGCACATACTTCAGTTCGGAAGTGTCC 2707706 29 100.0 32 ............................. CAGTTCGTGAACTTCTGGCCGGAGCAGTCGTA 2707645 29 100.0 33 ............................. AAGTACAACAACGGCAAGCTGCGCTGGCTCATG 2707583 29 96.6 32 .........................C... AACAACGCCGCAGACAACAGCGTGAGCAACGG 2707522 29 75.9 0 T....................C.T.CGAA | ========== ====== ====== ====== ============================= ================================= ================== 7 29 95.1 32 CTTTTCCCCGCATACGCGGGGGTGATCCC # Left flank : TGGAGCCGGGCAGTTGCTGGCAGTTCCGGCTGACTGCAAACCCCACCAAAAGCTGCAAAGACACCAAAAACCCCGCAGCGCGGGGAACTGTGGCCGCACATTGCACGACACAGTACCAGAAGCAGTGGCTGTTGGAGCGCGCTGCAAAGCACGGCTTTGCTCTGCGGGACGAGGGATTTACCGTGACCAGGGTGCAGTGGCAGCACTTTGCCAAGCACGGCACCCGGCCGGTGACCCTGCTGGCAGTGACCTATGAGGGCATTTTACAGGTGACCGATGCGGAACAGTTCCGGGCACTGCTGTGTCAGGGCATGGGGCGCGGCAAGGCCTATGGCCTTGGGCTGATGACCATTATGCGCGGAGGAAACTGAGATGGACGAGATGCCGGGCATGATTCGGCCGGGCCTACAGGCGCTGCCACAGGTGAAAGACCGGATGACGTTTCTGTATCTGGAACACTGCACCCTTGGCCGACAGGACGGCGCGATCACCGTTACAGA # Right flank : AAAACAGCCACAGGCTAAACTAAAAATGAAATGATGTTTCTGGAAAGGAGAACTCTGTAATTTTGGCACTTGCTCAGGCTGCTATTAAAAACCCAAGAGCATAAGGACTTTATGACGAATTATCGTTAAAAATCAAGCAAACAAATAAGGCTCACCGCCAATTTTAGCGGTTGGCCTTATTTGTTTGCTCATGTATGAGGTGAATTGCGTTTAACACGGGGGCGCTTCCCAGAAGCATCACAGATACACCTCCACAGTCAGGTCGGTCCACGCTGCACGGCGGAACTGGTGGGGCATCTTGTTGGCTTCCCGGTAACGCTTGGCGGTTTCAAAGTCGATGGTGAAGGTGAGGATGGGCTTTTCCGATACAGCCATCAGATCGGTGCGCTCCTCTTTGGACTTCTTGCAGCCGGTGTTCAGCTTCCAGCGGTAGGAGTAATCGGCAATAGGGGTGACGACTTCAACGAACTGCTCAATCAATTCGGGCGCAAGACAGGCAC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCGCATACGCGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCATACGCGGGGATGATCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //