Array 1 1-1213 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHYM01000024.1 Helicobacter sp. 16-1353 NODE_24_length_1213_cov_36.5943, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1 33 91.7 30 ---................................. GCTTATTATTCTATCAATTTCAATAACGCT 64 36 100.0 28 .................................... TGTAATATCTTTAACATCGTTATTAAGA 128 36 100.0 30 .................................... AATACTTGGTTAAAGCGGGTGCTAGTGGGA 194 36 100.0 30 .................................... ATATAATAATCCAAATCAACAAGGGAGATG 260 36 100.0 30 .................................... ACAGCACCAGAATTAGAGCTTAGTGCCTGT 326 36 100.0 30 .................................... GGCTATTACGAATATTGTAGATAATCGTAA 392 36 100.0 30 .................................... ATAAGCGAATACAATATGCCGAGCGATTTT 458 36 100.0 30 .................................... CGATTACGCTAAAATCCTCCTTATCATAAA 524 36 100.0 30 .................................... TTATTAATTAAAGCATTATCATTAGCAGAT 590 36 100.0 30 .................................... AGAAAAAACTACAAGATGTTTGTCTATAAG 656 36 100.0 30 .................................... AAGCACGAGCTAAATGTCGAAATAACACTT 722 36 100.0 28 .................................... TGTAATATCTTTAACATCGTTATTAAGA 786 36 100.0 30 .................................... AATACTTGGTTAAAGCGGGTGCTAGTGGGA 852 36 100.0 30 .................................... ATATAATAATCCAAATCAACAAGGGAGATG 918 36 100.0 30 .................................... ACAGCACCAGAATTAGAGCTTAGTGCCTGT 984 36 100.0 30 .................................... GGCTATTACGAATATTGTAGATAATCGTAA 1050 36 100.0 30 .................................... ATAAGCGAATACAATATGCCGAGCGATTTT 1116 36 100.0 29 .................................... ATTTCATCGAAATTGATTATATACAAAGA 1181 33 91.7 0 .................................--- | ========== ====== ====== ====== ==================================== ============================== ================== 19 36 99.1 30 ATTATACAGATTAGACGCTTAGGGGGCTCTTAAAAC # Left flank : | # Right flank : | # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTATACAGATTAGACGCTTAGGGGGCTCTTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.90,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 22842-21823 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHYM01000004.1 Helicobacter sp. 16-1353 NODE_4_length_183377_cov_27.717, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 22841 36 100.0 29 .................................... AGAATCCGCCAAAGTATTTCATAGAATCA 22776 36 100.0 29 .................................... AATTTTAAATTTGTCAATGATGAAAAAGA 22711 36 100.0 29 .................................... GATAGCTCACTTTTGCCTAGTGTAAGTAA 22646 36 100.0 30 .................................... CTAAGAAACAATAAAACGATAGAGATAATA 22580 36 100.0 30 .................................... TCGCCAGTATAACTAATTATTAAGTCATTT 22514 36 100.0 30 .................................... TAGTTCAGTCGATATAAGTAAATGGACGAT 22448 36 100.0 29 .................................... ATTTCATCGAAATTGATTATATACAAAGA 22383 36 100.0 30 .................................... GCTTATTATTCTATCAATTTCAATAACGCT 22317 36 100.0 30 .................................... ATAGAAAACTACAAGATGTTTGTCTATAAG 22251 36 100.0 29 .................................... ATCAAATTTGCGAAATTCAAATAATTAAA 22186 36 100.0 30 .................................... AGTTGTTATGCCAAATAGCGATTTACCAAA 22120 36 100.0 30 .................................... ACCTTAAATCCGTTAACATTAATCTTAACA 22054 36 100.0 29 .................................... TAAGATGTTACAATTAACGGATGAATTGA 21989 36 100.0 29 .................................... GATGACGAATATTACAGGATTACGCTTGA 21924 36 100.0 30 .................................... ACTTTCCTTCGCCGCCATTTAAACCTTTTA 21858 36 97.2 0 ...................................T | ========== ====== ====== ====== ==================================== ============================== ================== 16 36 99.8 30 ATTATACAGATTAGACGCTTAGGGGGCTCTTAAAAC # Left flank : AGATTCCGCAAGGAGCTACAGAATCTGGGATTTTTTATGATTCAATACTCCGTGTATGTGCGTGTAGTGCGAGGAAATGAGCGACAGCAAAGCGTGGCGAACAAGGTCAAAGCCCACCTACCACCAAAAGGAAGCGTGCGAATGCTAACGATAACTGAAAAGCAATACGAAAATATGGATATCCTAATCGGTGAGCCAAAAAGTAAGAGCGAGAAAATCACGGGAGAGCAACTGCTATTTGAGTTTTAATTTAGATAGATTAATATTTTTGTGGTTTGTGCTGATTAAGATTCTATTTTAAAGTAGCTTTATAGTTTGGCTTGTATTTTAAAACTAGGTTTAAAATACAAGTGATGTCCTCTTAATTAAAAGAGTTATTTTAAAAGCAATCCCTAAGCCTCTAATTTGTATTTTGTAATTGTAGCATATGTATTTTAAAGTTATATTAAGCAATGAAAAATCTTAATATTTCCCAGCTTAACGCTACCCGTTAAGATTCT # Right flank : AAGATGGATAAAACAAACGGAGCGGAATATCATTTGAAATTAATTATATAAATTAGTTACTTATTATTCTACAAATACCCCATATTATCCCCTATCTCTTTCCCAAAAAATATCCCTCCATTTTACACTCATGTAGCAGAGTTTAACATTCCGTGTTCGATATTAGTCATTAATGCTTTCCCCATTTTTCACCCATATAGCTACCCTTACCCCTAATACCCATTAATAAGCCGTAGTTATTAGACATAGATAGATATGATTTTGTTGATTGATATTAGATAGTTTGTGGGTAGAATCTCCCATTTATAATGAGAGATTCTATATTAAATTTATATAGTAAGATTTGTTTGAAATTTTATCTTTCAAATTGGAATGGCTCACCTCGCACTTTAACGCAGTCTCCGCCAAAAAGTATAATCGACCAAGCACTTTCCCATACAGTTACATTTGTTAAACCCTCTGCTGGAAATCCATCTTTTGAGGCTTCTTCGAGCGCGTCT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTATACAGATTAGACGCTTAGGGGGCTCTTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.70,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //