Array 1 27056-25370 **** Predicted by CRISPRDetect 2.4 ***
>NZ_OAJH01000025.1 Neisseria meningitidis strain Neisseria meningitidis isolate 22911, whole genome shotgun sequence Array_Orientation: Reverse
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
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27055 36 94.4 30 ........G...A....................... TCAGGGCTATCGGGGCTGACCGGTTTATTG
26989 36 100.0 30 .................................... GAGCATTGACACTATTTGTATGGCGTTAAG
26923 36 100.0 30 .................................... AGCATTTGGGCGGCACGGGCAAAGCCGTCA
26857 36 100.0 30 .................................... TCCATGTGAACTCGTTGGCGCGTTCGATGA
26791 36 100.0 30 .................................... TAAACCTCTGTCGGTTGGTTTGCTTAGATT
26725 36 100.0 30 .................................... CGAATTGGAAAAGTTGCCCTACCGGTGGGG
26659 36 100.0 30 .................................... AAACTAAAACTTTGGAAAGTTGGAAAGTTG
26593 36 100.0 30 .................................... CGGCGCATCCCCTTTAATTTAATATCACTT
26527 36 97.2 30 ............A....................... ATAGAACCTATGGCTGCTACGGCGTTGACA
26461 36 97.2 30 ............A....................... TTTTGTGGAGTTTTGTTATGAGTGAGGGCA
26395 36 100.0 30 .................................... CTTTAACTTTGACCGTATGCAATCTAGTTA
26329 36 100.0 30 .................................... AAGCATTGACGATATTTGTGTGGCGTTGCA
26263 36 100.0 30 .................................... AAACGCCGGTAGGTTTCGTCTGTCTCCATA
26197 36 100.0 30 .................................... CTGCAAGCATTTTCATCATCGGCTGTCATA
26131 36 100.0 30 .................................... CTGCAAGCATTTTCATCATCGGCTGTCGTA
26065 36 100.0 30 .................................... CTGCAAGCATTTTCATCATCGGCTGTCATA
25999 36 100.0 30 .................................... CTGCAAGCATTTTCATCATCGGCTGTCGTA
25933 36 100.0 30 .................................... GGAAGAGCGGCATCTGAATGCGGAAGAAGA
25867 36 100.0 30 .................................... CATCAAATCATCCGCCGCGATTCGATCGCA
25801 36 100.0 30 .................................... ATGATGCCGAAACCCTGCAAGCCCTGAATA
25735 36 100.0 30 .................................... ACCAAGATATATCAAAATTGTAGATGAAAA
25669 36 100.0 30 .................................... TGCGGAAAGCCTCCATGCTTTGCAGCACTG
25603 36 100.0 30 .................................... AATTTGCGCCTTGCTGCATTGTGTAGTTTG
25537 36 100.0 30 .................................... TTCTTCCCGATTGAGGTTGCTAGTTTTGTC
25471 36 100.0 30 .................................... AGTCAATGAATCACTAAAAGCCAAGTCAGA
25405 36 100.0 0 .................................... |
========== ====== ====== ====== ==================================== ============================== ==================
26 36 99.6 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT
# Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGCCGGAAGAAGGTGCTCATGAGAAATCTCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGATTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG
# Right flank : ACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGTG
# Questionable array : NO Score: 6.24
# Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT]
# Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37
# Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41
# AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: R [0.68,4.5 Confidence: HIGH]
# Array family : NA
//