Array 1 40161-39592 **** Predicted by CRISPRDetect 2.4 *** >NZ_QESY01000045.1 Pectobacterium atrosepticum strain SS26 SS45, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 40160 28 100.0 32 ............................ AGCTCCGACCGACATGCGCTTAAAGGCGGCGA 40100 28 100.0 33 ............................ ATGCAGATATTGTAACTAAGCATCATATTGCAT 40039 28 100.0 32 ............................ TGTAGGCCATATAACAAATACTCAAAGATAAC 39979 28 92.9 32 .............T......T....... TTGCGATTGGCACCGTTAACCGCTCAGTGACC 39919 28 92.9 32 A............T.............. TCCAGTACTCAGGATCGTGTTGGTACGATAAA 39859 28 96.4 32 .............T.............. AGTTCTGACACTCGTTAAACGTCATAACGCGC 39799 28 100.0 32 ............................ GAAATATCCACCTGGACACTGTCCATAAAGAA 39739 28 96.4 32 .............T.............. ACGACGGATAGTCTCTGTCTGACGAACGCAAC 39679 28 96.4 32 .............T.............. GCCCTGAAAAAAATGGGTTGTGATGACCATGC 39619 28 78.6 0 ............G.......T.C..TGT | ========== ====== ====== ====== ============================ ================================= ================== 10 28 95.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CCCTCTTCGACTACATCCTGACGTTCTGTCATAAAGTCTGCGTCAGCACGCTCTTCTTGCAGAAAAGAATGCCAATTGGGTTTGACTGGGCGCAACATGATGGTATCCCCTTCACGCACGATCTCCAGTTCATTGACGCCTTCAAAGTCCATATCACGCGGCAAGCGAATAGCACGGTTATTACCATTTTTAAATACTGAGACAATACGCATAATGCACCTCCTCTTAATACAGAATTCAGCAAGCCGCTAGCCTGACTAAAACATAGGTTAAGTATAGATTTGAATCGTTCTCTTGTATATCCGCGGCATATGTACGCACCTAACATAGGTCTACCGAGAATAGATAAAATCGTTACCACAGGGTTGGCACCCTTTTTTCATGGACGCTTGTAACTCATTGATTTTTAATATCGATTAAGCGCTATGATAAAAAAGGGTTTTTCGGGAGAAATGGTTTATTTTCTTTTAAAATTAGGTAACTACCGTAAAATAGGAACG # Right flank : TTATCGAGATAAGTCTCTAGCACGGCTCACCTCAAGGGAGTTATTCCCCATTCAGCGTGACAACCAGCGAGCGGCTGCCGCCGTGGTTGCGGTGTTCGCACAGGTAAATGCCCTGCCAAGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGAATCGTCAGGCTATTTCCTAGCAGGCTGCCTTTCAGGTGCGCGGGCATGTCGTCGCTACCTTCATAAGTATGGCGGTAGTAAGGTTCATCCTCCGGCACTAAGCGATTAAAAAAGCTCTCGAAATCCTGCCGCACCGTGGGATCGGCATTCTCATTAATCGTCAGCGCCGCCGAAGTATGTTTGATGAACACATGCATCAACCCGACCTTTATCTGGCGCAGTGCGACAACCTGCGCCAGTATTTCGTCAGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGCGTCCACATGATTTGGCCTCTCGCTATCAGGCTTCGCGTGCCAGAATAG # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 50261-51010 **** Predicted by CRISPRDetect 2.4 *** >NZ_QESY01000045.1 Pectobacterium atrosepticum strain SS26 SS45, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 50261 28 100.0 33 ............................ TGAAATGATCGCTGCACGTCCGCAAGGTCATAA 50322 28 100.0 32 ............................ TGTTGAAGCTCGATCGATACTGGAAGGTACTT 50382 28 100.0 32 ............................ GAGGTAAACCCTGATGAGTTGCTGGCTGATTT 50442 28 100.0 33 ............................ TGATAAGCCAAAGACCACGCATACATGGCCTTA 50503 28 100.0 33 ............................ GCAGGGTGTTCTGCGTTATCTGCGCGTCAACTA 50564 28 100.0 32 ............................ TGCATCTTGCGTTGAGTCGAGTTTATTCAGTT 50624 28 100.0 32 ............................ TTATTGAGTACGCCGCAAAACTAATTAAATAA 50684 28 100.0 32 ............................ AAACTTCTAATGTCGTTCATAGTGGATAGCGT 50744 28 100.0 32 ............................ AGAGAAACCGTAAGGAGTCGCCATGTTCCATT 50804 26 92.9 32 ..........--................ TTGCTGATTGGAGTAAGCACAACGTGCATCAT 50862 28 96.4 32 ...........C................ AAGCGTAGTACAGAGCAACCCCGAGGCGGACG 50922 28 96.4 33 ...........C................ ACAGACAGAAGGTGCATAAAAAGGAAGCCTCAC 50983 28 85.7 0 .....................C..TTC. | ========== ====== ====== ====== ============================ ================================= ================== 13 28 97.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GAGTTACGGAGGTACCCGTTCCCAACATCACCACGCTGGTATTGGCGATGGGAATATTCCAGTACAGAGACTGGTTTCCTTCCTCCGTGACATATTCGACACGGCCACCGTTGACGAGAATGCGGCAATGTTGGAGGTAATAAACATTGGCACGTTTGGAATGCAGAATGGTTTTTAAATCCGAAGGGCTAAAGGCGTTATCCATAATGTATTTTCTGCCGTAATAGATAATAACCATGACGCCAGCGAAATAAATCGCAAGCTAACTATTTGATAAGGAAAAATATAATATTCAGAAAACTGATGAAAATCAGCCTATCACAGTTGTATGTGAAAAATGATGACCGCAAAAAATATTACCCAAACGTAGACCCTTTTTATTTGGCCTATTTCACAGGATTAAAAATCAATGAGTTACAGATAGGGTTAAAAAAAGGGTTTTTACGAAGAAAATGGCAATTGCTGCTAATAAAACAAATCGTTAGAGTGATCGGGCTACA # Right flank : ACGGTACTCAGCGCTGCTGTCTGGTTATTATCGAGGCTGCACTGCGCCATCGCTCAATGCCTGTAGCTCTTAAATAACGTATTGTTGATGGCTTATTTTCGTAATATTTTCAAGTAACGGGTTTCTTTTGGTGCGAATGGAAAATTGCAGATTGGACGTTATTAACATTTAAAAATCATCATTTTTCCGTTAAAGTGACCTTACAGGGAAATAGTTCGTTGACTTAAGTAAAATTCAAAGGAGTGAGTCACTTGTGAAATACGATCCGGTTTTAAAAACGCTTGTTGATGATGACTATCGGTTAGAAGATCATCTTGATTTTAAAAAACAGCATGCAGATATTAACTATCAGAAATTACATGCTCAACTAAATGAAATAAATAACGATAACATTCATGCCATATTGACTGCGCAGGAAGCGACGTATTTCTTACAAACGTTATGCACACCTAATCCTAATCAATCGTGGAAAACAGCCATGTTTGGCTGTACCGATCCTC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //