Array 1 1288037-1288484 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGHM01000001.1 Hafnia alvei strain NCTC6578, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1288037 28 100.0 32 ............................ GAAAAAGCACAAGGGCAAGGGCACGCACAGAA 1288097 28 100.0 32 ............................ TCACCACGCCCGATGAAGAAGTCATTATCAGA 1288157 28 100.0 32 ............................ ACTTTTTTGGGGCGTCAGATGGAAAAAATATT 1288217 28 100.0 32 ............................ AACATATGACGTGCCTACAGGATGCATTAATA 1288277 28 100.0 32 ............................ TGAGAAACTAGGCGTTGCAGAGATAGCCCCCA 1288337 28 100.0 32 ............................ TGTATGGGAGACAAGGAAATGGGCAACAATCT 1288397 28 96.4 32 ..............G............. CAAACAATCACAGCTCGCATGCCGTGTACGCC 1288457 28 78.6 0 ...C.................CA.A.TT | ========== ====== ====== ====== ============================ ================================ ================== 8 28 96.9 32 GTTAACTGCCGTACAGGCAGCTTAGAAA # Left flank : GGTGACTTTCACTGGCAAAGTGCGCAACCACAATCTTGGTGATAACGTTAGCGCGTTAACCTTAGAGCACTATCCTGGGATGACGGAAAAAGCGTTAAATGAAATTGTGGCAGAAGCCCGCTCGCGCTGGCCTCTACAGCGTATTTCGCTGATCCACCGCATTGGCGCCATGTATCCCGGCGATGAAATAGTATTCGTTGGAGTGACCAGCGCACATCGCAGCATGGCCTTTGATGCCGCCGAGTTCATTATGGACTACCTCAAAACCCGCGCGCCATTCTGGAAACGAGAAGCCACCGAGCAGGGCGACCGCTGGGTCGACGCCCGCGACAGTGACCAACAAGCGGCAAAACGCTGGTAAGTTCTTTCAACCCTTTTTTCTGCCCTCACGATAACTCATTGATTTTTCACTCCTCCAATGAACCGTAAGAAAAAAGGGTTAAATTCCCAAAAATGAGCTACCGATCTGATTAATCGACGCTTTCTGCGAATATCCTACA # Right flank : TATCTTCTGCCCCATTTTCACTATACTTATTTCAGCACTGCACCTTTTGTTGCAGTATTTGAGATAACTTTCGCAGAGGTAAGGGGCTAATTTGATTTGGTTTGAGCAAGGTCTTTATTTGCGGGTTGAGGAGTTGGAGAATGGGCCACGGCCTTTGCCGCTGCGTAGCGGGTTTAGCCGTGAAATAGCCTATCGGGCGCTAGGCGTGTTTAATCCCTCTGAATCATCGGATGCTTACTACATATTATCTAACGATCGGGATGAAATATGGTTTATCTGCAATCGACACCTACGAACGGTTGCGCTTTTACCTGATACCACCGACTTTAGGCGTCCGATTGTCTATTGAGTCTGGGGGGGGAGTAATTTTATCTGTTTTAATTTGGATATAACTTTTTGTTAAGGACTTTAACGGAACAAAAACTGCTCATTGTCACCTTGTACCCGAGTTATTTTCCACCCATCCTGCCAGACGAGCCAGAGAATGAGATGTTGCTGAA # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: F [matched GTTAACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.60,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1361736-1362183 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGHM01000001.1 Hafnia alvei strain NCTC6578, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1361736 28 100.0 31 ............................ TGGGCGGTAATGCCACACTAAATGAGACTCA 1361795 28 100.0 32 ............................ CAGTTAACAGATCGCAGTAAACGTCAGAATCA 1361855 28 100.0 32 ............................ TTACCATCAAACATATCTTGTGACAGTTCGCT 1361915 28 100.0 32 ............................ ATCTTGTAGCCATCTGAACCATCTCGTTTTGT 1361975 28 100.0 32 ............................ CGTGCGTTCGGCGGTGCGTCTAACCCGCCGAC 1362035 28 100.0 33 ............................ ATGTGCGCGCAAACATACATTAAAGATGAAATT 1362096 28 100.0 32 ............................ ATCACGAAACTCTGAATCAGTCACCCGATTGA 1362156 28 92.9 0 .........................GT. | ========== ====== ====== ====== ============================ ================================= ================== 8 28 99.1 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GTGCCGTAGTGGGAACGCTACTGGCGCTTGCTTCTGCACGCAGCGAATGGCCGATGGTAAGCTCCATGTTCCTGTGTATCTTTGCTGCCATGATGCTGTTCCTGTATGCCTCAAGACCTGCTAAGGCCAGCAACCGTATCGATCCTGCCTAAGCGCTTTGGCTCCCCGCAGATAAAAATAGGCGGGGAGGCCATTAGCAATCGCCGCTCTTTATTTGGCATATGCAACAGACATATGTTTGCCTGTTCGCAGAGCGCTAGCAATGCAGGGCTCAGATGAGCTGAAAGCGTCAATCTGCCCCCCCAACTTTCCGGTGTGATCCGAATGCCACTCTCTAGCGATTCCCCTAAATACGATAAGCTTCCACGAACCCTTTTTTTTCGCCTATTTATACCCCTTTGATTTTTATATAAGAGTTTATCACGAAGATAAAAAAGGGTAATGCAGTGAAAAATGAGTTACAGATCTGATTATTCGAAGCTTTATACGAATATTCTACA # Right flank : ATTTTGCCTCGGTTTCGTATCCGTGGAACAAAACGTTCAAATAAAAAGCTCACAGGGATGAAATGAGTAGATTATTGATATTACTATTTTTTATTTCTTCACCAGTCTTTGCTGTCAGCGATATTAACAACGCCACAAAGGCGGCTCTAGAATTCAATAAATGGTATCTGCAACAGATTGAAAAAGATGTCTATCCGCTGCTAGGAAATCGTAGCCCAGAAATGAGTGAATACGTAACCGCAGAGACGTTGGGAAAGCTGCATAAGGCAGTGAATAGCGATGATGAATTCTATGACGCCGACTTTTTTACTCGTTCACAAGACATTGAGGCTGATTGGCCGAAAAATGTCACTGTGGTTTCTTCCGATCTCGATCCGGTTTGCCTGAATGTTTACGTTGCTTATGGGAAAGATATGTACCACACGGTCATTGACTGTATGGTGAAGGAAAAAGGGAAGTGGAAAATCCAGTCGGTAGCGCAGCAAGCTATCGTGCCAAAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //