Array 1 189212-189789 **** Predicted by CRISPRDetect 2.4 ***
>NZ_CACSDM010000010.1 Klebsiella pneumoniae strain Kpngiani7132493, whole genome shotgun sequence Array_Orientation: Forward
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================ ================================= ==================
189212 28 100.0 33 ............................ TGCCTCCAATGCAATCACCGGCCTGCTAACCGG
189273 28 100.0 33 ............................ CGTGTCGAAGCGCACCTCGTAGCCGAGCCAGTC
189334 28 100.0 33 ............................ CGTCATCAGCGCCTTGTTCCAGCGGCGACCACC
189395 28 100.0 33 ............................ TCCAGTCGTCGTAGTCCTCGGTAATGTCCTCGA
189456 28 100.0 33 ............................ TATCGTGCAGAGTCACAACCTGACGGGATTATC
189517 28 100.0 33 ............................ TCGTGCATGGTGAGGATTCTACAGTCGCACCAT
189578 28 100.0 33 ............................ TACCTCCCGGCGTCCGCGCCAGGGCGATCACGT
189639 28 100.0 33 ............................ CCTGCAGCTGGCCGTCGAGCTGACGGATGCCGG C [189644]
189701 28 92.9 33 ............T.T............. TTCATCACGTGTGAGCGGATTTGGCTCTATCCT
189762 28 89.3 0 ............T......A.......T |
========== ====== ====== ====== ============================ ================================= ==================
10 28 98.2 33 GTCTTCCCCACACGCGTGGGGGTGTTTC
# Left flank : TTAGCGTTGGCGAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGACTCGACGGCGCAGCGCAGGATAACAGCCTCCAGCTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGCGGTAACTTCGCGAAGCCACGGAAGGCAAGCGCCAGGATGACGCGCTACGTTCTGGGGATGACAAAAGCGTTTTACCCCCGGCTGCGGGCCGGGCAGGCCAGTAGGGTAGACCGGTCCAGGTCAGCAGCAAATCGACGGTGGTTATATGGTGACATACTTTTTCGTTTGATGAATGTTGATGCTGATGCGGAAACCCTGCGGAGTGCAATTGTTGTAAATCTGGCGTTTTAATACGCCGCTAAACACAATATGCTGGT
# Right flank : TCGCCTTTCAAGTGACGACAAGTCACGTCTGTGCGCATTTCTCAGATGAAAGGGGATTCCTGACGTAGAGGCATCAATGCCGTGACATAGTTATCCTTAATGTACATCAATGTCTTCGAAATTTCGTTTGGCCAGCACAGTCTCATATGTTTTTTGTATGATTTTACTTATAAATATTCGTGAACTATGTTTGTCCTATACTTTCTTTAGGGGCATCTAAATCATTCGAGTTTATTACTCGTCTGGAGATATTGTTCTTCATATTAATTATTTATAGCTTTTTATATTATTATTTTTGGCTTTTATCTTTAATTCAGTGTGTTGTGGATATTTTTGATTTTATAAAAAGTTATTTATAAGTTTCCCGGTTTTTAGTATTAATAAAGGGCACATGTTTTTTAAGGAAAAATTCCATGAGGCGCTTGATCAGGGTTTCGCTACAAAATCAACATGCCATCGCGGCGATAAGTTTTGAAAACTGTCCAGCGAAAACCCGGATG
# Questionable array : NO Score: 6.17
# Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTCTTCCCCACACGCGTGGGGGTGTTTC
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37
# Reference repeat match prediction: F [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37
# Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41
# AT richness analysis in flanks prediction: NA [56.7-50.0]%AT Score: 0/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: F [5.28,0.37 Confidence: HIGH]
# Array family : I-E [Matched known repeat from this family],
//
Array 2 198543-199248 **** Predicted by CRISPRDetect 2.4 ***
>NZ_CACSDM010000010.1 Klebsiella pneumoniae strain Kpngiani7132493, whole genome shotgun sequence Array_Orientation: Forward
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================ ========================================= ==================
198543 28 100.0 33 ............................ TTCGCATGGCCCGATCTCGGCGCCGCCGGTGGC
198604 28 100.0 33 ............................ TGACGGACATACCGCGCTGCCCGGTCTGCGGCA
198665 28 100.0 33 ............................ CCGTTGGCGGGACAGTTTTTTCACTGACAGGTA
198726 28 100.0 33 ............................ TGGCACTGTCACTGTCGAGACGATATCGACTGC
198787 28 100.0 33 ............................ TAGATACGGCTGCATTTGGCGTGAAGGGGTGCA
198848 28 96.4 33 .....................A...... TACACTGAGCATGTACGCCGTGGATGCAGTAGC
198909 28 100.0 33 ............................ TGTCGTCACATAGTGCTCTATCCACTGGTTAGC
198970 28 100.0 33 ............................ TAGTTCGCGAGGAGACGCCCCAAGGTTCACCGC
199031 28 100.0 33 ............................ CCTCATCTAGTAAAAGCGGTTTTGTTATGAATG
199092 28 100.0 33 ............................ TCCGCCGTTTAATCGCGGTGATGATATCCGGCA
199153 28 100.0 41 ............................ TGGAATCCACGACGCGCCGTACCAGCGCTGGCATTCGTTCT
199222 27 85.7 0 ......A...T.T....-.......... |
========== ====== ====== ====== ============================ ========================================= ==================
12 28 98.5 34 GTCTTCCCCACGCACGTGGGGGTGTTTC
# Left flank : TTTACAAAGAACGGCTCTGTATTGATTTGGCATTTTCACTCTCGAGGGAAATGGCGGGCCGCTACGATAAACACAAAGTCTCTGAGGCATTCAGAAAGCGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTGCGTGGACGAATGAAGCTGTGGTTTGTCGAACCACGGCCAAATGTTTTTGTCTCAGGCGTCAAAGATTCGGTCGCGCAAACCGTTGTTGATTACCTGTTGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGATCTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAACTCTCGCTCTTTCACAATATGTTGGT
# Right flank : CTTGTGAGGGGTCTACCAGCATTGGCGTACTGGAGTCTTCCCTACACATGTGGGACTTAGCAATAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTAAAATAATTTTTAGCTAATGAAACTGTCGTTTGGTAGAGGTAGGAATATTTTATTGCGATAGAGAAGGGAACTGTTTAAAGCAATAACGGCGAATGATTCTTATAAAATGAAGGATAGGGAATTCATATGTTTCGACTTTACCAGTCACATGATTTAATACGCCAATTAAATCCTGAAGACTTTCAATATATTTTGACACCAGCAGGTTCGCTAAGAGAAGCGTGTATAAATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCTTTTGGCCTACCGAAGGAAATATACAACTCATCTCCACATAAAAGGCCATATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTATGATGAGGTAGAGCACAGGCTACAAATTGGCT
# Questionable array : NO Score: 6.19
# Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: R [2,9] Score: 0.37/0.37
# Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37
# Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41
# AT richness analysis in flanks prediction: F [63.3-46.7]%AT Score: 0.27/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: F [5.55,0.37 Confidence: HIGH]
# Array family : I-E [Matched known repeat from this family],
//