Array 1 3763-3594 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_OAAJ01000084.1 Neisseria meningitidis strain Neisseria meningitidis isolate R513, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                            	Insertion/Deletion
==========	======	======	======	=============================	===========================================	==================
      3762	    29	  96.6	    39	.............T...............	CCTTGGGATAACAGCAATATTCAAAGGTTATAAAAGACC    	
      3694	    29	  96.6	    43	.........................T...	ACGTAAAATCTAAAGAAACCGTGTTGTAACGGCAGACCGATGC	
      3622	    29	 100.0	     0	.............................	|                                          	
==========	======	======	======	=============================	===========================================	==================
         3	    29	  97.7	    42	CGTCATTCCCGCGCAGGCGGGAATCCAGA	                                           	       

# Left flank :   ATGTAGGTTCGTGGGAATGACGCGGTGCAGGTTTCCGTGCGGATGGAT
# Right flank :  CTGTCGGGCATCTGCAGCGGTTTGCTAAAAAACGCTTTACCGTGATCAGTGTGCAAAGTTAAAATGGGGAGGTAAGCTTTTCAACCAGCAATTCGGCGGGCGCGGAATCGGGCGGTTTACCGAACCCCGGCGTTCGCGGCGCGCCGCCCCGTCCCGTGAAGGCAAACTCAAGGAATAAAAGATGAATAAAACTTGGAAACGGCAGGTTTTCCGCCATACCGCGCTTTATACCGCCATATTGATGTTTTCCCATACCGGCGGGGGGGGGGGGCAGGCGCAAGCGCAAACGCAAACGCATAAATACGCTATTGTAATGAACGCGCAAAATCTGCCCGAGGTAAAGTGGGGGAATCAATATCAGTCATTGACGCACAAAAGCAATGAACGCGAAGTTATCCATACGAGTGGTTTTAGTTTGGTAAAAAAGCACATTAGTTTCTCATTCAATAATACCGATGAAGTTGTTGCTGAAAAAAAAGATGCTGTCGTTTTCGGCGCGG

# Questionable array : NO	 Score: 2.56
# 	Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     CGTCATTCCCGCGCAGGCGGGAATCCAGA
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [4,6] Score: 0.37/0.37
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  R [-11.30,-12.60] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-2] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [51.7-36.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.68,0.74   Confidence: LOW] 

# Array family : NA
//