Array 1 101367-102264 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP063117.1 Haemophilus parainfluenzae strain M1C142_1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 101367 32 100.0 35 ................................ CTTATAATATTGTCTAACTTCAGATAATGCTTTAC 101434 32 100.0 34 ................................ TTTCACTATTTGAATCAATGTGCTGAATAGGGTC 101500 32 100.0 34 ................................ ATTGTTGCTTTTTTTGCCTTTATGGTCTAATGCT 101566 32 100.0 34 ................................ AAACCAAGCTTATTCGATACAACAGCATTATTTT 101632 32 100.0 34 ................................ TGCTGCGCAAAAAGGAGAAGGTACGGACAGCTTG 101698 32 100.0 33 ................................ ATATCATTTAATAATATGCGCTCCTGCTTGCCT 101763 32 100.0 35 ................................ TAATGGCTCAAATTCCTCAAAATATTTCCCATTTT 101830 32 100.0 36 ................................ AAGGTTGCGAAATACGACCAAATTCCACAAAGCCAA 101898 32 100.0 36 ................................ AACATGGGATAAGTTACCACCAAATGCTCAAGCTGC 101966 32 100.0 35 ................................ TAAGGTTACCAGTTATGAATCAAATTTAGATCCAA 102033 32 100.0 35 ................................ TAATTCTTGGTTTTTTTGACCTTTTACGATAGAAG 102100 32 100.0 34 ................................ ACTATAATGCTCCTTGGTTAGATGCAACTTTATG 102166 32 100.0 35 ................................ ATTATTGCATCGCCTGTTGGCAATAAATCACCTTG 102233 32 78.1 0 ...A........A.....T.T..C....C..T | ========== ====== ====== ====== ================================ ==================================== ================== 14 32 98.4 35 GCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : TTGATGAGATAAACCATGTTAATGCTGATTACTTATGATATTTCTTTTGACGATCCAAACGGGCAAGCGCGATTGCGCCGTATCGCAAAACATTGCTTAGATTACGGCGTGCGCGCGCAATATTCAGTATTTGAATGTGATGTCACGCCTGACCAATGGGTCGCGTTGAAAAACAAACTGTTGGAAACCTACGATCCCACATGTGACAGTCTGCGTTTTTATCATTTAGGCAGTAAGTGGCGTAATAAAGTGGAGCATCATGGGGCAAAACCGGCAGTAGATGTATTTAAAGACGTGCTTGTCATTTAGTTCGCTAACCTGTTGTTCTCATTAAAACCCTGATGGGATAGCGATCTTTATTTTCTTTAACAATTTGGATGAATTAATTTATTTGTATAACGACAATGTGGCCGTTATACTTACCAAACTCCTTATCATAAAATCAGTTAGCGAAATACAGTGTTTAATGCACTGATTTTTCTTGTTTTTTTATGTAGGGA # Right flank : TAAAACTCAATAAATTTGAATAGTATAATATTTACCTTCCTACTCTATCCCTCAACCCAATTCATACCCAACAACATTCCCCCTTGTATTTCCCACCCATTCGCTCTAGACTATGCCCCATTTTTAGCTTTCATGATTTATAATTATGCGTGTTTCCGACTTTCATTTTGACTTACCTGATGAGCTGATTGCTCGTTACCCTAAAAAAGATCGCTCTTCTTGTCGTTTACTACAACTAAACGGCGAAAACGGGGAAATTTCTCACCGCACGTTTACTGATGTATTAGATTTAATCGGCGAAGGTGATTTGTTGATTTTTAACAATACGCGCGTAATCCCTGCTCGTATGTTTGGTCGTAAAGCCAGCGGCGGGAAAATTGAAGTGTTGGTGGAACGTGTTTTAAGTGAACATCATTTCTTAGCGCATATTCGTTCATCAAAAGCTCCGAAAGAAGGTGCTGAATTATTTTTAGGTGAAGATAAGCTCGGTGAAAATAATG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1957145-1956467 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP063117.1 Haemophilus parainfluenzae strain M1C142_1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 1957144 37 100.0 33 ..................................... GAAGAGGATCAATTAACACGCCTTGAACGTTAT 1957074 37 100.0 35 ..................................... TTGATTCTCGAATACTTGGACTTCTCTGTCCTTTT 1957002 37 100.0 32 ..................................... GCCAAAGGCCAAACAAAGCCATCAGTGGTGAC 1956933 37 100.0 33 ..................................... TCAACTGCGTAAGACTTGGCATCGGCATATTAC 1956863 37 100.0 36 ..................................... CTAACATCTGTAATTGACGTTCTTTCTTCCATTCAC 1956790 37 100.0 32 ..................................... CCAAAGTGGTTTTAATTCGTCGTATGATTTTT 1956721 37 100.0 36 ..................................... TCAGCAATAGTAGCAATACCAGTTGGTACTGTTCCT 1956648 37 100.0 34 ..................................... ATCAAAATGTTCATTGCTTCGGCACTCGTCATCA 1956577 37 100.0 37 ..................................... ACGCCTGTTGGATTGCGATCTGGTTGGTATTTAATAG 1956503 37 81.1 0 ............T......T.T..........TT.TA | ========== ====== ====== ====== ===================================== ===================================== ================== 10 37 98.1 34 GTCGAAAGACATCGCCCTGCTCGAAAGGGATTGAGAC # Left flank : GCGGATATTCCTTTGCATATTTTAGAATTAGCAGGGTTTCAACCTTGTAAGGGATGTTGCAAGCATTTATTAGCCGAGTGGTAAATAAATGCTGAAACCCCTATTATTTTTGACCGCACTTTATTTGAAAGTGTGAGGGTAACATCTAAATCTTCAACCAAAATCTACAAGCCTTACAAAGTCCCCATCAATTGATTTCTATATATCACGCATCATTTTCAATTTCTTGCCTTAAGGCATTTTCTTTATCTGGTTTATATTTTAATAAAGTATTTCAATAAGTTATTTTCAATTTTACCAATAAGGCTGATATTCTAAAGCTAGAAAAAATAAAAAAATAGCGGTAAAATAGACCGCACTTTCGATTGGTTTAGAAAGGAAAAAAACATGCAATCTGCTCATTATTTGCTCAAATCAAGAGCCAACTCCTTAACCTTCCAAAAAAATTGGGAAGTGGGTCTGAAAGGCCGCATGATTCCTGCCTCCAGCATACCGCTGCA # Right flank : AGGATTTATTTTGTAAAGGTAAAGAAAACGGTCAAAAACCTATTTATTTTTGACCGCACTTTATTTGAAGAAGGGATTAACGTTTAAACATGCCGCCTAAACCACCAAGGCCACCTAAGCCGCCTCCGCCCATTAAGCCTTGCATGCCACGCATCATTTTCGCCATTCCACCTTTGCGCATTTTCTTCATCATGCGTTGCATTTCGTCAAATTGTTTCAGCAACTTATTCACATCTTGCACTTGTGTACCAGAACCTAATGCAATACGACGACGGCGAGATCCTTTGATAATATCTGGATTGGCGCGTTCTTTTAAGGTCATGGAATTAATGATAGCTTCCATTTTGATAAACATTTTGTCATCTACTTGATTTTTGACATGATCCGGTAAGTTTTTCGCACCCGGTAATTTTTCAAGCATCGACATCATGCCACCCATTTTTTTCATCTCACGAAGCTGTTCACTGAAATCGTCTAGGGTGAAATCATCACCTTTCTTG # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAAAGACATCGCCCTGCTCGAAAGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.30,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,1.15 Confidence: MEDIUM] # Array family : NA // Array 3 1962363-1961174 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP063117.1 Haemophilus parainfluenzae strain M1C142_1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 1962362 37 97.3 36 ............C........................ ACGGTGTAAACACCGAATCTAATCTTAGCCACGTAG 1962289 37 97.3 30 ............C........................ AATAAGCTCCGTAATAGTCCCAAACCTGCC 1962222 37 97.3 36 ............C........................ AGATAAAACAGGCATTGATTTTAATTACCTTGAAAT 1962149 37 100.0 34 ..................................... CTTCAGTTAATCCACTCTCTTTAGCCTTATTAGT 1962078 37 100.0 36 ..................................... TTTACGCCATTCTGTTGCATAGCTTTCTAAGCCTTC 1962005 37 100.0 35 ..................................... AATGCTGTTTTATTGCCTTCTGGTATGTAGATTTA 1961933 37 100.0 39 ..................................... TCCGTACTTTTTATTTATAATTGCGTATCTCATTTTATT 1961857 37 100.0 36 ..................................... GCTTTTGATAGTTGGCTAACCACTCGCGATCCATTG 1961784 37 94.6 34 ............T......C................. ACAAAACGCTCAACTGCGTCTTCACCCTCACCAT 1961713 37 94.6 35 ............C......C................. GTTGCAAGTGCGGTTACAGTTGAAGTTGCTAAGTC 1961641 37 100.0 34 ..................................... TCGATTGCTTTAACAAAGTTTTCATGGTGGTTTA 1961570 37 97.3 33 ............T........................ AGTGTGACAAATCCACCTTGCCCAGCTGTTGTT 1961500 37 94.6 36 ............C......C................. TGTAGACGTTTGAAGAAGCCTTTGCCTGCTTCTTTG 1961427 37 94.6 35 ............T......A................. TCCTTGGAGATTGTCATACTAATACCTTGCACGTT 1961355 37 94.6 35 ............T......A................. TCCTTGGAGATTGTCATACTAATACCTTGCACGTT 1961283 37 97.3 35 ............C........................ CTCGTCTGTAATTTGACTTGCACTCATTTTCATAA 1961211 36 86.5 0 ............T........TT........-..T.. | T,T [1961175,1961179] ========== ====== ====== ====== ===================================== ======================================= ================== 17 37 96.8 35 GTCGAAAGACATAGCCCTGTTCGAAAGGGATTGAGAC # Left flank : GACATTATTTTCCAATTTTAGGAGTAAAGCATGGCTCAATATTTAATTGGTTATGACATTTCAGATCCCAAAAGATTGCAACGAATTTATCGTAAAATGACACATTATGCGACGCCAATTCAATACAGCATTTTTTTATTAGATGGCTCAGAGAAATTGCTCAAACAATGTTTGGCTGAAATTATGTTAATCTTTAATAAGAAAGAGGATGATTTAAGAGTTTATCCTTTGCCTACCAATACAACACAATGGCGACTAGGAAAATCAAGTTTGCCAGAAGGTATTATTTGGACAGCCTTGCCAACAAGCTTGACATTATAATGCTAGAAAAAATCAAAAATAGCGGTAAAATAGACCGCACTTTTGATTGATTTAGAAAGGAAAAGTATGCAAATTGTTTATTATTTGCTCAAATCAAGAGCCAACTCCTTAACCTTCCAAAAAAATTGGGAAGTGGGTCTGAAAGGCCGCATGATTCCTGCCTCCAGCATACCGCTGCA # Right flank : GCTAAAGTGCGGTTAGTTTTCAATATAAATTGGAAATTGACCGCACTTTTTATTTCCTTTCATTTTTACAAATTTGCATTTTCACCTTTCTATCTATTACTTTTTTATAATTCACAGCGTCAGTAATTGATTTTTAGCTCAGAGGGTTGAGCACTAATTTAATTTGTTAAGAATTTATACAGAAAAAATAGAGAATTAAGCAATTATTGGCACATAAAAATTGTTCTAATTAAAAAATATGAGGGAATGAAAATGGCTGGAATTAATAAAGTAATTATTATTGGTAACTTGGGGAATGCACCAGAAATTCGGGCGATGCAAAATGGTGATACGGTTGCTAATTTAAGTGTGGCGACATCTGAAAGCTGGGTGGATAAAAATACGCAGGAAAAACGTGAAAATACCGAATGGCACCGCATTGTGCTTTATCGTCGATTAGCCGATATTGCAGGTCAATATTTACGTAAAGGATCAAAAGTTTATGTTGAGGGGAAACTGAA # Questionable array : NO Score: 2.63 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.53, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAAAGACATAGCCCTGTTCGAAAGGGATTGAGAC # Alternate repeat : GTCGAAAGACATCGCCCTGTTCGAAAGGGATTGAGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.30,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //