Array 1 60418-59230 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAFBL010000012.1 Escherichia coli strain ZH64R-D NODE_12_length_135035_cov_207.694542, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 60417 29 100.0 32 ............................. GGCCGTATTAGCGGCCCGGTGTTATCGCTGGT 60356 29 100.0 32 ............................. GCGGGGATTTGTTGGCGAAACAGGTCGGCGTC 60295 29 100.0 32 ............................. GGCTGGCAGCGTATCCTGGTGCGTGAATTAAC 60234 29 100.0 32 ............................. CCGAGTAAGTCGAGTTCACGGGCGCGGGATTC 60173 29 100.0 32 ............................. AATTTCCCGAGTTGGCCGCGGGCCTGCATTTG 60112 29 100.0 32 ............................. TGTTAATAAAAAAGGCCGGTTTCCCGGCCTGA 60051 29 100.0 32 ............................. AAGCAACAAATGCTGTATACGGCACATTTATA 59990 29 100.0 32 ............................. CCCTCGATCTCGATGCCCAATCGCACAGCGTC 59929 29 100.0 32 ............................. CCCTCGATCTCGATGCCCAATCGCACAGCGTC 59868 29 100.0 32 ............................. GTTGGTGGGGTGAGCAGTTCGCCGACGACCCG 59807 29 100.0 32 ............................. CGCGTTGAATATCTGGTTGATAGCGCCAGAAA 59746 29 100.0 32 ............................. GATTTATTCTAAACAATGTCCACATTGTGACC 59685 29 100.0 32 ............................. TTGCGCGGGTGCGAAAGTTGACGGTGGATGAA 59624 29 100.0 32 ............................. CTTATAACCGGCGGCAAAAATCGTCGCGTTGG 59563 29 100.0 32 ............................. AGATTGGTTTTCCAGTCTTTGGCGGTTGGCAA 59502 29 93.1 32 .T..........C................ CTGTGCCGGTAGCCCCCTCCCTGTTCAGCCTC 59441 29 93.1 32 .T..........C................ AAATTGATCCCAGGGTGATTATCGTGGGGATC 59380 29 93.1 32 .T..........C................ ATTTCTTTAATTATTTAGCTGATGCTTTTAAA 59319 29 93.1 32 .T..........C................ GGTAAAAACACGGTCTGAACCGACATTCATGT 59258 29 96.6 0 .T........................... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.4 32 GAGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCTGTTTCACTGGGAGATGCAGGCCATCGGAGTAGCTGAAATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGATTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTCTCTTTTTTACCTGTTTAAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 87017-86622 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAFBL010000012.1 Escherichia coli strain ZH64R-D NODE_12_length_135035_cov_207.694542, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 87016 29 100.0 32 ............................. ATGCAACAGGTGCCAAAGCCCCCGACGGCACC 86955 29 100.0 32 ............................. CATGAGCCAGGACGACGCCCGGTCCGAGGGCG 86894 29 100.0 32 ............................. CGCAAAAACCATTTTTTCCCAGCTGGAGGTTA 86833 29 100.0 32 ............................. TCGCTGGCGGGGACCGATCATATCTGTCAATC 86772 29 100.0 32 ............................. GAATCATGATTCCGGACGACGTGCTGGCGCGA 86711 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 86650 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 7 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //