Array 1 51792-54332 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARVB010000003.1 Listeria seeligeri strain FSL L7-0999 NODE_3_length_280784_cov_45.772407, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 51792 36 97.2 30 ..C................................. CAACGCTCGTATATTCTTTGTAATCCATTG 51858 36 100.0 30 .................................... TGTACGCTGAACAACTGAAGTGAAACGTAA 51924 36 100.0 30 .................................... CAGCCACAAATTGCGGAATAACTGGCAAAG 51990 36 100.0 30 .................................... CATTCGCGTTATATTATTCATTTCCAAGCA 52056 36 100.0 30 .................................... AGTTTTCCGCACAAAGCCCGACTTATTTTT 52122 36 100.0 30 .................................... TAAGTTTGTTGCAATTCGCTTCGCAACTCG 52188 36 100.0 29 .................................... TACCAACGCCCTGCCAATTATGCCACTTT 52253 36 100.0 30 .................................... GGCAACGAAGCAAGAGGTCGCCGAAGCAGT 52319 36 100.0 30 .................................... ACTATATATACCCTGACACGACCATCGAAA 52385 36 100.0 30 .................................... AGCCCAACGCTGATTAAAGTCACGGAAATC 52451 36 100.0 30 .................................... CTTGGCGTTCTTCGGAAACAACTGCGTTTG 52517 36 100.0 29 .................................... ATATTGGTACAATTAACGCGGCTAAAAAT 52582 36 100.0 30 .................................... AAACTGCTTTATACCAATTGTTGTAAATTT 52648 36 100.0 30 .................................... CGACAACTGGGTCAATCATTCTTTGTTTCA 52714 36 100.0 29 .................................... ACTCCGCTCTGGAAGTTGGTTGACGTGAT 52779 36 100.0 30 .................................... ATGAGATATAAGTGGAAAAATGCTTTTAAT 52845 36 100.0 31 .................................... CCTTATCCTCACGCTGCAAGCAGCCCTCCGG 52912 36 100.0 30 .................................... GAAAGAACCTTTATAACCAGTAGGGAGCTT 52978 36 100.0 30 .................................... CTTCTCAGGAATCTTTTGAACAAATCGACA 53044 36 100.0 30 .................................... TTACCGAGCTTACTCTAAACAAACAATTGA 53110 36 100.0 30 .................................... AGTCGGTATCTCGTTATGTCATGCCGTTTT 53176 36 100.0 30 .................................... ATAAATTATACGGTAAAGCTCATCCCGGTG 53242 36 100.0 30 .................................... CACCTTCATGGCTGTTTCATTATCTACAAT 53308 36 100.0 30 .................................... AAGTCTACAAGCCATCTATGAAGGACTTAG 53374 36 100.0 29 .................................... ATAATAAACGCAAAGCACAAGCACAAATT 53439 36 100.0 29 .................................... AGGTTGCGCAAAATGTAGAAGTTATACAG 53504 36 100.0 31 .................................... GGGTATTGTAACATAATTCGGGACTTCATCT 53571 36 100.0 30 .................................... AACTGTAGAAGCCATCCGGTTAGATAAATC 53637 36 100.0 30 .................................... TATGACCAGTTGCGCCTTGCTTAGTCACAA 53703 36 100.0 30 .................................... GGCGTGATCGTTATATATATGGAGCAAAAA 53769 36 100.0 30 .................................... AACAAGAGTCGTCAAGGTGGGGCTACAATA 53835 36 100.0 30 .................................... ATTCAGAAGCAACTTGTAAAGCTTGATTTT 53901 36 100.0 30 .................................... TGTCCTCGTGATAGTGCTAAATTAGATTTT 53967 36 100.0 30 .................................... GGGAATGCAGAAATAATATGTGTCAATTAG 54033 36 100.0 30 .................................... ATGCCGATGGGAAAGGTAATTCTTTTGAAT 54099 36 100.0 30 .................................... TTGCTAAGATAATTGTCATTCCCAACATTT 54165 36 100.0 30 .................................... GTGTGAAGTTAGAACAATTTCAGCATGAAA 54231 36 100.0 30 .................................... AATAGAGATCGTTTACTGTATCAACTTACA 54297 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 39 36 99.9 30 ATTTCCTAATACCAAAACTTGAGAGAGTACCAAAAT # Left flank : TATTCCCATTTTTCCGTTTTCTATTTCTTCAGTTAGCTAATTTTGAAAAAATATTATATCTGACTCAATTACTACGTTCATTATAGTTATAGAGCTTCACCCTTGCAAGCGGTTACAAGTATTTCGAAAACGGTTTTCGCTGGACGAAAAAAAGGGATATGAGATGAATTAATGAAAAGATGCAGTTCTTTAGATGGAAATACCCCTAGAAATGGTTGTTGACTCTAGGGGTATCTCTTTATTAATTCGTTTTCGGAGCAGCTATTTTTTTATTGTTCAACTACTTTTTAATTTATATTCTAATTTTTCATCAGATAGATTTGTGTAGATAATTAGATTTTGACCGCGTTTTTCCAGAAAATATTGCAGGTCTTCATCACACTCCTACTTGCCAACTTTTTCAAATAGAGACCCGGTAATGGTTTCAACTCGTCATCGAAATAAAAATACATTTACATATTTTCATCAGTCACCTAACATCATTTTTGTTAAGTGTTGAA # Right flank : TGTCTTTTCCATTATACCTCAACCTAAATCAACCTATCAAGGTAAACAATAATATTTGCGGGAATTCCTTTGTAGTCAACGATAATTCGCCATTCATTATAAATGAAAATAAAATAAACTAATACAAATACAACTAAGTTATCCACAGCTTCCAACTTTAATTCGACCGTTTTCCCACCATAGTTATCCACAGCTAACATAGACCAATTTATTGCTTTTATCCAATCCGATTCTTCTACGATTAAAGGTATCTTTGCAATAATTTGTTCTTTTTTAACCATAATTTGTAATTCATTAACAATATCACTAAAATAAAAATGGTTAATTGCACCATCCATCCAAATATGCTCAGAAATGATAAATACATTGATTCCTCTTGTTAACATTTTTTCAACATGTAATTGAAATTTCTTTATTCCCGCTTCTGAAATTATAGTTTTTTCTGGTATTTCTATAAAAAATAAAACTTGCTTATTAAATAATTCTTTTGCATACAGATT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCCTAATACCAAAACTTGAGAGAGTACCAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.40,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 2 78507-78088 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARVB010000003.1 Listeria seeligeri strain FSL L7-0999 NODE_3_length_280784_cov_45.772407, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 78506 29 100.0 36 ............................. TCAAAATGAATTCAGGAAAAAACATGGTTGAATATT 78441 29 100.0 36 ............................. AATCCCATATCTAGTTGTTGTAAAGCATCTAGACTG 78376 29 100.0 35 ............................. AGTGGTATATTTATCGTAAACGGCTTTGGGTTTTA 78312 29 100.0 36 ............................. TTTTTTATTGGTATTTTGCTAGTTTCGCCGCAAAAG 78247 29 100.0 36 ............................. AAATAATTCGCGCTAATGGATAGGTTTTTTGCAATC 78182 29 100.0 37 ............................. GATGCTGCAGCGTATATAATTTAATTGAGCTAATTTT 78116 29 93.1 0 ..........T.C................ | ========== ====== ====== ====== ============================= ===================================== ================== 7 29 99.0 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : CGCAACAACTTCAGCCGATGTCCTGCTAGAAAAAGGCGCTGTAGAAGTTATTGCCTGCGCAACCCACTCGGTTATGGCCGGAAACGCAACCGAACGCTTACAAAACTCAAAAATCAAAGAAGTTATCACCTCCGACTCCATTGACCTACCAGAAGATAAACAATTTGATAAATTAACAACCATCTCCATCGGCCGCATCCTAGGCCGCGCAATCGAAGGCGTTCAAGAAAACCGCTCATTGCATCCGTTGTTTTAAGAAAATCTATAAGCAGAGACTCAAATTGGGTCTCTGTTTTTTTTGTACGTTAACTTCTGTCGACCGTTAGTAGTGTAGAAAACAAGGGGGATCGACAGAACATTGGATTCCTTTGTGGGAGAATAGGTTTGGTGGGTTTTTAGTTATGAAATTAAAGTTCGGTGCTTTGATTTTAAGAGGTTTTTTGGAGATCGACAAAAATAGGCGCTTGAGGTAAGATGGGAGTAAGAGGAAAAGTGAACGG # Right flank : GTCTCCCAGTCCACTTACTTCAAGTGACCAGAAGTGTTTTAACTACTTTTAATCATCCAAAAAACACCAAAGCGGAGGAAACACTCATGAAAAAAGCATTTATCCCGCTTCTATTTTTACTATTCCTACTAGCTAGTTGCTCCGCGCCCAATGAAAAATTAACAAAAAACACCAAGATTTTTAAAGAAGGCGTTATTAATGCGGATTATCAGATTCCACAAAACCTAGCAGAGCTTGAATCTAACAGTGAAGATATCGTAAAAGTGAAATTACTACAAAATAAAGAAAATGGCAAAAATAACAGCACAATAAGTGAAGTAGAAATTATCGAGAAATACAAAGGGAATTTCGAATCAGGTGAGAAAATCGACATTTCAGAACCTTGGCTTTTAAACACAGGAGAGTACCAAGCTGTGGAAAACTACATTGCACTTGAAAAAGGTCAAGAGTATATCTTGTTTTTAAGCGGAGGACATGACGGGGATAGAGTAAGTTCTATC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //