Array 1 65441-63704 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQLO01000004.1 Klebsiella pneumoniae strain NU-CRE101 NODE_4_length_266305_cov_23.0675_ID_17090, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 65440 28 100.0 33 ............................ CGTTTAGTTTTTTGATGGAGGGCGGCGTTGTTC 65379 28 100.0 33 ............................ TTGCGTGCCTTGCGTTAATACAGACATGTTTTG 65318 28 100.0 33 ............................ TGAGTGCATATTATGTTTATCGGACCCGGCGGG 65257 28 100.0 33 ............................ CGATGTCCAGGTCGGCGTCCGGATGAAAGGCCA 65196 28 100.0 33 ............................ CGGGGATCGTTATGTCTTCTCTTTCTGGTTAGA 65135 28 100.0 33 ............................ TCCGCCTCTTGCTTCCGACCTGGTAAAAGCGAT 65074 28 100.0 33 ............................ CCGGATTCGATGAAATTTCCGGTAACTCAATGA 65013 28 100.0 33 ............................ TTTCACGCTGCCGCTGATGGCGTGGCTGTGGGT 64952 28 100.0 33 ............................ CGGATCCCACGCGGGCTGTATTCTCTACATCGG 64891 28 100.0 33 ............................ CTTCACTTCCTCGGCACGTCAGCCGCGACAGCG 64830 28 100.0 33 ............................ CAGGTCGATATGCAGAGAAAGGTTGCATGGGTA 64769 28 100.0 33 ............................ CATCATTGCCCGCGCGGCCCTCAGGCACGAGGG 64708 28 100.0 33 ............................ CAGCACAGTGGGAAAGCGACATTCCGTTAATTA 64647 28 100.0 33 ............................ CAACCAACCGACGACGGACCTCAACGCCGCGCA 64586 28 100.0 33 ............................ CGCAACTTTAGCGGCGCTGTATTCTGCGTCGGT 64525 28 100.0 33 ............................ TACCGGATCAAGTTCTGGCAGGTCGATGACGAC 64464 28 100.0 33 ............................ CGAGGGTTTGAGCGAAAGAGCGGAGCTTTTTAC 64403 28 100.0 33 ............................ CCCCCAATAAGGCAGCTGATTTCTTCGGCGTTT 64342 28 100.0 33 ............................ TCATCATCCAGGCGCTGCCCGGCGCGGTTTATC 64281 28 100.0 33 ............................ TATGCTTTCTGCTGCTACTGACGCAATTGATCC 64220 28 100.0 33 ............................ CAGCCGATACCCCGGCGGCGTCCGCGTCCTTGC 64159 28 100.0 34 ............................ CAAAACGGCGTCATTGAGGTTGATTGCGGCTGTG G [64142] 64096 28 100.0 33 ............................ TGGATCGTCGGCAGCTCACTGCTGGATATTGCG 64035 28 100.0 33 ............................ CAATTACCGCGACTGCGGGAATGCTCTGAAGAT 63974 28 100.0 33 ............................ CAGGCCTGACGGCTCTTTCGGCAGGGCGTCGAT 63913 28 100.0 33 ............................ TACTCGGATAGTACAAACAGGAACCGGCTATGC 63852 28 100.0 33 ............................ GCGTGGACTACCAGGGTATCTAATCCTGTTTGC 63791 28 92.9 33 ......G.T................... CCCCGCTTTTGAGCACGCGCTGGCATTCGTTCT 63730 27 85.7 0 ......A...T.T........-...... | ========== ====== ====== ====== ============================ ================================== ================== 29 28 99.3 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAAGAACGGCTCTGTATTGATTTGGCATTTTCACTCTCGAGGGAAATGGCGGGCCGCTACGATAAACACAAAGTCTCTGAGGCATTCAGAAAGCGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTCCGTGGACGAATGAAGCTGTGGTTTGTCGAACCACGGCCAAATGTTTTTGTCTCAGGCGTCAAAGATTCGGTCGCACAAACCGTTGTTGATTACCTGTTGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGATCTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAACTCTCGCTCTTTCACAATATGTTGGT # Right flank : TTGTGAGGGGGCTACCAGCATTGGCGTACTGGAGTCTTCCCTACACATGTGGGACTTAGCAATAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTAAAATAATTTTTAGCTAATGAAACTGTCGTTTGGTAGAGGTAGGAATATTTTATTGCGATAGAGAAGGGAACTGTTTAAAGCAATAACGGCGAATGATTCTTATAAAATGAAGGATAGGGAATTCATATGTTTCGACTTTACCAGTCACATGATTTAATACGCCAATTAAATCCTGAAGACTTTCAATATATTTTGACACCAGCAGGTTCGCTAAGAGAAGCGTGTATACATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCTTTTGGCCTACCGAAGGAAATATACAACTCATCTCCACATAAAAGGCCATATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTATGATGAGGTAGAGCACTGGCTACAAATTGGCTG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [19-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 74893-74194 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQLO01000004.1 Klebsiella pneumoniae strain NU-CRE101 NODE_4_length_266305_cov_23.0675_ID_17090, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 74892 28 96.4 33 ..........T................. CTGCGTTAATACCGCCGTTTGTCTGATTCAGAT 74831 28 96.4 33 ..........T................. TTGATAGGATTGATGAAGGAAAAAACCAAAAGA 74770 28 96.4 33 ..........T................. CCTCTGCAGGCTATCGACGTCTCTAAAAACGTT 74709 28 100.0 33 ............................ CTGGTCAAGTTGGTTTCCTGGCGTGGCAGCGTT 74648 28 100.0 33 ............................ TATTTATTATCAGGATATGCCTGTGTGGGGGGC 74587 28 100.0 33 ............................ TCCAGCGAACAATGGCGGTGGATATGGCGGCGG 74526 28 100.0 33 ............................ CCGATATCCGCGAAAACGGGCTTGACGTGGTAC 74465 28 100.0 33 ............................ TGATCAGCGAGCTGCTGATTGATATCGAAATCG 74404 28 100.0 33 ............................ TTCCATCATCTGCGGCGGGATAGCGCTGCGGGT 74343 28 96.4 33 ............C............... CCTGCAGCTGGCCGTCGAGCTGACGGATGCCGG 74282 28 92.9 33 ..............T........A.... TTCATCACGTGTGAGCGGATTTGGCTCTATCCT 74221 28 92.9 0 ...................A.......T | ========== ====== ====== ====== ============================ ================================= ================== 12 28 97.6 33 GTCTTCCCCACATGCGTGGGGGTGTTTC # Left flank : TTAGCGTTGGCGAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGACTTGACGGCGCCGCGCAGGATAATAGCCTCCAGCTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGCAGTAACTTCGCGAAGCCACGGAAGGCAAGCGCCAGGATGACGCGCTACGTTCTGGGGATGACAAAAGCGTTTTACCCCCGGCTGCGGGCCGGGCAGGCCAGTAGGGTAGACCGGTCCAGGTCAGCAGCAAATCGACGGTGGTGATATGGGGACATACTTTTTCGTTTGATGAATGTTGATGCTGATGCGGAAACCCTGCGGAGTGCAATTGTTGTAAATCTTGCGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : CGCCTTTCAAGTGTCGACAAGTAACGTCTGTGCGCATTTCTCAGATGAAAGGGGATTCCTGACGTAGAGGCATCAATGCCGTGATATAGTTATCCTTAATGTACATCAATGTCTTCGAAATTTCGTTTGGCCAGCACAGTCTCATATGTTTTTTGTATGATTTTACTTATAAATATTCGTGAACTATGTTTGTCCTATACTTTCTTTAGGGGCATCTAAATCATTCGAGTTTATTACTCGTCTGGAGATATTGTTCTTCATATTAATTATTTATAGCTTTTTATATTATTATTTTTGGCTTTTATCTTTAATTCAGTATGGTGTTGATGTTTTTGATTTTATAAAAAGTTATTTATAAGTTTCCCGGTTTTTAGTATTAATAAAGGGCACATGTTTTTTAAGGAAAAATTCCATGAGGCGCTTGATCAGGGTTTCGCTACAAAATCAACATGCCATCGCGGCGATAAGTTTTGAAAACTGTCCAGCGAAAACCCGGATGT # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACATGCGTGGGGGTGTTTC # Alternate repeat : GTCTTCCCCATATGCGTGGGGGTGTTTC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //