Array 1 2287868-2289543 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR890464.1 Klebsiella pneumoniae isolate INF079-sc-2280008 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2287868 28 100.0 33 ............................ CAAGGTAGCTAACTCGGTTCGTACTGGAGAGAC 2287929 28 100.0 33 ............................ CAGCTTTTGATGCTTTGTCTACTGATTGTTGTG 2287990 28 100.0 33 ............................ TACAGGATGAAAGACAAAGGGCAGTAACAAAAG 2288051 28 100.0 33 ............................ TTCCCAGGACTGCGTACCGTTTGACGATTTTGA 2288112 28 100.0 33 ............................ TCGCTACGTTAAGCTGGTGATGCGCGGCATGGA 2288173 28 100.0 33 ............................ CCGTATTCAATACCAGAAACACAAAGGCCGATG 2288234 28 100.0 33 ............................ TCGATGTGGCGTCGCAGGTTGTATCTATGATTA 2288295 28 100.0 33 ............................ TGACAAGGCCACAGGTGAAAAGAAAGAGCAAAC 2288356 28 100.0 33 ............................ CTGAAAGACGAGATTGACAGGAAGGGCGAGACA 2288417 28 100.0 33 ............................ TAGTCCACGTCGGGCTCGGGTCTGCTGGTGTCA 2288478 28 100.0 33 ............................ CTTTGACATTTCGTCACCATAAAAAATCCCATC 2288539 28 100.0 33 ............................ TGTAACGTGCAGCATCATTCAGCTTGTCGGAAA 2288600 28 100.0 33 ............................ TGGGCCTCAAACATAAAAGTTGATGGCGTAAAG 2288661 28 100.0 33 ............................ CCCAGCGTTGCGGGACTTCGATAAGCTGCGCGG 2288722 28 100.0 33 ............................ CAACATCAATTTCAGATTTCTCGCCAGCGTATC 2288783 28 100.0 33 ............................ TATTTAGCGATTCAGTGATACTGGCCAGTGAAA 2288844 28 100.0 33 ............................ TGATGAATCGCCATCAGCGGTAACTATCACACC 2288905 28 100.0 33 ............................ CCTGGCGCGCTGGTCGACTTCAACCCCTCGGAC 2288966 28 100.0 33 ............................ CTATACGATGGTGCTCAATCTACGTCAATATGA 2289027 28 100.0 33 ............................ CGGCTCTTTTTTATCTCCTTCATCCTTCGCTAT 2289088 28 96.4 33 .............G.............. TGATCGGCGTGCCGTTTGTTGGACCCGAAATAG 2289149 28 96.4 33 .............G.............. CGTCATCAGCGCCTTGTTCCAGCGGCGACCACC 2289210 28 96.4 33 .............G.............. TATCGTGCAGAGTCACAACCTGACGGGATTATC 2289271 28 96.4 33 .............G.............. TCGTGCATGGTGAGGATTCTACAGTCGCACCAT 2289332 28 96.4 33 .............G.............. TACCTCCCGGCGTCCGCGCCAGGGCGATCACGT 2289393 28 96.4 33 .............G.............. CCTGCAGCTGGCCGTCGAGCTGACGGATGCCGG C [2289398] 2289455 28 89.3 33 ............TGT............. TTCATCACGTGTGAGCGGATTTGGCTCTATCCT 2289516 28 85.7 0 ............TG.....A.......T | ========== ====== ====== ====== ============================ ================================= ================== 28 28 98.3 33 GTCTTCCCCACACACGTGGGGGTGTTTC # Left flank : TTAGCGTTGGCGAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGACTCGACGGCGCAGCGCAGGATAACAGCCTCCAGCTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGCGGTAACTTCGCGAAGCCACGGAAGGCAAGCGCCAGGATGACGCGCTACGTTCTGGGGATGACAAAAGCGTTTTACCCCCGGCTGCGGGCCGGGCAGGCCAGTAGGGTAGACCGGTCCAGGTCAGCAGCAAATCGACGGTGGTTATATGGTGACATACTTTTTCGTTTGATGAATGTTGATGCTGATGCGGAAACCCTGCGGAGTGCAATTGTTGTAAATCTGGCGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : TCGCCTTTCAAGTGACGACAAGTCACGTCTGTGCGCATTTCTCAGATGAAAGGGGATTCCTGACGTAGAGGCATCAATGCCGTGACATAGTTATCCTTAATGTACATCAATGTCTTCGAAATTTCGTTTGGCCAGCACAGTCTCATATGTTTTTTGTATGATTTTACTTATAAATATTCGTGAACTATGTTTGTCCTATACTTTCTTTAGGGGCATCTAAATCATTCGAGTTTATTACTCGTCTGGAGATATTGTTCTTCATATTAATTATTTATAGCTTTTTATATTATTATTTTTGGCTTTTATCTTTAATTCAGTGTGTTGTGGACATTTTTGATTTTATAAAAAGTTATTTATAAGTTTCCCGGTTTTTAGTATTAATAAAGGGCACATGTTTTTTAAGGAAAAATTCCATGAGGCGCTTGATCAGGGTTTCGCTACAAAATCAACATGCCATCGCGGCGATAAGTTTTGAAAACTGTCCAGCGAAAACCCGGATG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACACACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2298295-2299603 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR890464.1 Klebsiella pneumoniae isolate INF079-sc-2280008 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2298295 28 100.0 33 ............................ TAGGTTTTCTGGACACGGAAAACGGTCGCGGGC 2298356 28 100.0 33 ............................ TCGCCAGAACTTCACTCAACTCCGCAGAAGGAA 2298417 28 100.0 33 ............................ TCATTAGGAAAAGGCGCCACAGAGGAGCAAATA 2298478 28 100.0 33 ............................ TAACTGATGTTGGCTGAAGCGTAGCCTTCACTG 2298539 28 100.0 33 ............................ CCTGAATCAACGGCTTTTGATGCTTTGTCTACT 2298600 28 100.0 33 ............................ CATATGGGCCAACAACAAGCGCCTCATTATCCA 2298661 28 100.0 33 ............................ CTGGTAAGGCTCAATGATTTGCCCGATCACATC 2298722 28 100.0 33 ............................ CGCGACGACCTCGTCATCCTCCCCGCTGCGGCT 2298783 28 100.0 33 ............................ TACACCCAGCTCTTTGACGCAAAGGCTCAGGAG 2298844 28 100.0 33 ............................ TCCTTGGTTCGTTTCTTCTGATGTTTGCAAGGC 2298905 28 100.0 33 ............................ CTGGTTGACGTATGCCGTGATGCTGCTGGTAGG 2298966 28 100.0 33 ............................ CGCTGTATGCCCCCCATCCTTCGCAAGCACTAC 2299027 28 100.0 33 ............................ CGATGACAACTTTGCCTACTTCGCTGCGCTGGC 2299088 28 100.0 33 ............................ TTCCTCTTCTTCCTGACAATCAGCGCAGCGCTG 2299149 28 100.0 33 ............................ TGCGGGTGGATGACAATAACGCCTGGCGCGCCG 2299210 28 100.0 33 ............................ CCTGTTAAGGATGACGCGGGGAAATGGGTTATC 2299271 28 100.0 33 ............................ TCGATGGCGAGCTGCTGGTGAAAAAGTCGATAC 2299332 28 100.0 33 ............................ TCCAGGCCAGATCTGTTTGGGTTGGTGTCGAAG 2299393 28 100.0 33 ............................ TGAAGGTGAGCGCCAAAAGGAGTGGAAGCATGC 2299454 28 100.0 33 ............................ CGGCTGCGTTATCCGGCAGCACGAACTGGACCT 2299515 28 100.0 33 ............................ TGACCTTAGAGGCTTCACTCAGTGCCACTTTTT 2299576 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 22 28 100.0 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : CCTTTACAAAGAACGGCTCTGTATTGATTTGGCATTTTCACTCTCGAGGGAAATGGCGGGCCGCTACGATAAACACAAAGTCTCTGAGGCATTCAGAAAGCGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTGCGTGGACGAATGAAGCTGTGGTTTGTCGAACCACGGCCAAATGTTTTTGTCTCAGGCGTCAAAGATTCGGTCGCGCAAACCGTTGTTGATTACCTGTTGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGATCTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAACTCTCGCTCTTTCACAATATGTTG # Right flank : CTTGTGAGGGGTCTACCAGCATTGGCGTACTGGAGTCTTCCCTACACATGTGGGACTTAGCAATAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTTAAAATAATTTTTAGCTAATGAAACTGTCGTTTGGGAGAGGTAGGAATATTTTATTGCGAAAGAGAAGGGAACTGTTTAAAGCAATAACGGCGAATGATTCTTATAAAATGAAGGATAGGGAATTCATATGTTTCGACTTTACCAGTCACATGATTTAATACGCCAATTAAATCCTGAAGACTTTCAATATATTTTGACACCAGCAGGTTCGCTAAGAGAAGCGTGTATAAATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCTTTTGGCTTACCGAAGGAAATATACAACTCATCTCCACATAAAAGGCCATATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTATGATGAGGTAGAGCACAGGTTACAAATTGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //