Array 1 123791-124118 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBDQ010000002.1 Halanaerobacter jeridensis strain DSM 23230 Ga0454029_02, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 123791 37 100.0 36 ..................................... AAAGTACTTTATAAGGACATTCTTTATAATCATCAC 123864 37 100.0 36 ..................................... AAAGATTTATAACCTAATAATCTTAATTCATAGACT 123937 37 100.0 35 ..................................... AATTTCTGAATTTGGCGGAATATTTATCAACATGA 124009 37 100.0 35 ..................................... CGTTGCCATCATCATCTTCAAAATCATTTTTCATA 124081 37 94.6 0 ................................A...T | A [124112] ========== ====== ====== ====== ===================================== ==================================== ================== 5 37 98.9 36 GTTTAAATACTTATAATTCCGCTTAAGGAATTGAAAC # Left flank : GATTTTAATCATATCTATGTATCACGATATGAATTAGAATCTGCTATGGAACAATTTAGTGATTGTCCAATTAAAGGATTTAGAGGGGATTGTGAATATGAATTAGATGCTAATTTGAGTGAAGATAAAATTAAGGATATAAATTTATTAGCTGATTTTGCTTTTTATAGTGGAGTAGGATATAAAACTACTATGGGCTTAGGACAAGTAGCTAGACTTAATAAATAATTTAGATTTAATACAGGAAAAAGAGTATAAATATTGAAATAATATTATAGGTTAAAAATGAAAATATTATTTCCGAGAGTCGTTGTATGCCTTAAAACCCCTAGGGTTGCTCGGAAGAGAAGTATAACAGAGAATGATGGAGTATAATAGAGATAAATCAATTTAATGATTTTGGTTTTGGAAATGGATTTGGAGGTGATAAGATCAAAATTGATAGGTGTTCGGAAATGTTTATTTTAAGTCAGTCTAGGCAAGGGATCAGAATGGGTACA # Right flank : TTATTATTTATATTTCAAAGATTCTCCCATATGGGAGAATCTTTGAGTTTTTTGTATTTTTATTGACAAACACTTGTCACGAGGTTATGTTATATTATTTTTAAGGAAAGTGATAATATGCAGCAAAGAGTTTATGCCCCTTTATCAGCTTTGAATGCTTATAATTATTGTCCGCATCGAGTATATTTAGAATTTGTTTGTGGTCAATGGAAAGATAATGATCATACGATAAAAGGAATTTTGAATCATGAGCGTGCACATTCAGGTGAAAAAAGATATGATGGGAATAGGATTCAGACTACTCAAGTTTATATTAAATCAGATCGTTATCAGTTAGTAGGGAAGGTAGATATTGTAGAAGAAAAAGAAGATGAAATATATCCTGTTGAATATAAAAAGGGTAAGGCGGGTCAATGGACTAATGACCATCTACAACTGTGTGCTCAAGCGATTTGCTTAGAAGAACAATTAGAATTAGAAATAGAAAAAGGGTATTTATG # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAATACTTATAATTCCGCTTAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.50,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 1 48664-48989 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBDQ010000004.1 Halanaerobacter jeridensis strain DSM 23230 Ga0454029_04, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 48664 37 100.0 36 ..................................... TGCAATAGAAAAACACCCTCTCGGGTGTTGGTTACT 48737 37 100.0 37 ..................................... AGCGGTAGTGCTATGAGGCGACTACTTATGAGAAGTA 48811 37 100.0 35 ..................................... ATCTTATCTGCACCATCATTCAGATAAGTTTTAAA 48883 37 100.0 33 ..................................... CTACCACTGCCTATTCCTTGTTCCGCTAAATAA 48953 37 89.2 0 ...........T.....A.................GA | ========== ====== ====== ====== ===================================== ===================================== ================== 5 37 97.8 36 GTTACAATACTAACTCCGTTAACTAGGAGACTGAAAG # Left flank : TTAAACTAGCAAAAGATACTACTAGATGGAAGAGTTGGTATCGTTATTCAAACCGTCAAAATAAGAAAATAAAAATGAAAGGCTTAGTAGGGGAGGTTGTTTATCAAGGAGATTTAGAACCATTTTTGCCTTATTTAATTTTAGGGCAATATACTCATGTAGGAAAAAATACTGTGTTTGGTTTAGGAAATTATAAATTAATTAGTAATACTTAAATTTTAAGAAGGAGTTTGAAGCGGAAGTATATAAAGTAATTATATGTGGAAAGAATACTAATTTTCGCAAACCCTCATTTTAGTATTAATTTGTGGGATGAGTTATAAAGAGTTATTTGTAGTTTGAATTGTTTCAAGCCTATGTTTTACAAGGGATGAAGTTGGTTTCGCAAACCCCCTGGGGTTTTGTGCAAGATTAACTTTGCGAAAAGTGATAGTTTGTTTTGATGATAGGAAATGTTTTGATTACTGCTATAATAGGATTGTTATGCTGTAAAATTTGCG # Right flank : AATCATAATAAAAAAGAAAGGAGCTAATCCAAATGACAGATATAGATGATAAAATCAGCAAACAGTTAATGAATAATGATGAATTAGATAACAAATTAAGGAATTCTTTCGATAAAATCATAGAAGACTTAAAAGACATCGACAAACAGAAATTATTAAAAGAAAATCCTGACTTAACCGAGGAAGAGTTAGAAGAAAAAATCGATGAACTAGAAAAACGATTAAAAGAAGAAAAAGATAATTTCATGGAAAAATTGTCTAATACATTAAATTTCAAAGAATTATTCAATGAATGATCTCTTAACCGAGGTCATTCTCTTTTTTTGAAAAATTAGTTTTTACTTTCACCCCGTTGGGAATAGTCTTCTTTATAATAAAAGTAACACTGATTAAAGGAGGACTAAAAATGGGCCAAAAATCATTAGTAGTAGATGACTATGGTATGTTTGTAGGTAAGAAGAGCGAGCGGGTAGTGGTAAAAAAAGACAAAGAAGTTATCA # Questionable array : NO Score: 2.95 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAATACTAACTCCGTTAACTAGGAGACTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.70,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 51689-52015 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBDQ010000004.1 Halanaerobacter jeridensis strain DSM 23230 Ga0454029_04, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 51689 37 100.0 35 ..................................... TATTTAAAACAGCCTGTTTCTTTTCTTCCCCATTC 51761 37 100.0 35 ..................................... TATTATAATATGCGTCAACACCCTGCCAATTTACA 51833 37 100.0 36 ..................................... TAAAATCCCTCACCACTTCCTGGATTCCAATTATCA 51906 37 100.0 36 ..................................... ACTTCTTCTTCTACATTATCCCAAGCGTCTGACACA 51979 36 78.4 0 ....T.A..-.C.....A.T..C.............T | C [51992] ========== ====== ====== ====== ===================================== ==================================== ================== 5 37 95.7 36 ATTACAGTACTTACTCCGTAAAGTAGGAGACTGAAAG # Left flank : ATGTAGAGATTGTGAGTATCAAAATTATTGTGGGGATGTGTGAAAGGGGAGAATAATAATGATTAAAAAAGTATATTGTTATAAATGCGGCTCATATTATTGGACTCCCAAGGGAGAAAAAGAGATTAAAGATTGTCCATTTTGTAGTCTTGGGAAAGCATCTGATAATAATTTATCTTATAAAGAAAAGTTGCAAACCAAAAGAATTAATTATAATAATTATGATAAATAAGAAGGAATATAAGTATAATACGTGAATTAATAAATTGAAATACCATTTTCGCAACCCCCATGGTTTTTAAAGTTTTTTAAATGATTATTGAATATGAGTGAGCTTTCTATATCATTGCTAATTACTATTATAGCAACGATGAAAAAAGTTTCTCAAACCCCCTGGGGTTTTATGCAAGATTTGGTTTGAGAAAAATAAAAGGTTTTTGTGATGATAGTAAGAACTTTGATTACTGCTATCATAGGATTATTATGTTTTAAAATATGCG # Right flank : TATACTTATTAGATTTATTTACTTTGTAATAAAAATTTAGTATAATATATATAAGAGTTGCATAAAGGGGGTGACACCATGAGAATTGATAGTTCTTATTCCCTATTTAACACAAGTAACAATATTAATAGTTATAACTTTTATTCTTCCCTAGTTAACTATTCTAATTTGAGCACTCGGACTCAAAATGTCAACAATTCTTTAACTGACATTTCTTCAATTTACACTAATTCTCTTGACACTGATTATCTAGATAATTTTCAATCTCAACTATCAGATTTAAGTACTGAAGCAGAATCTTTGATTACTGAAGAAGCAGATTCAGTTCTAAATACGACTGAAGAAAGTGATTCTGTTTTTAGTGAGCGAATAGCATCTAGTTCAAATACTGATGTATTAACTGCTAGTGCAGATACAGGTGCTACTACAACTGAATATGAAGTTCAAGTCAATCAACTTGCGCAAGCACAGGTTAATGAAAGTGCTAGTTTTGATAGTGA # Questionable array : NO Score: 2.85 # Score Detail : 1:0, 2:0, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTACAGTACTTACTCCGTAAAGTAGGAGACTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.70,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [73.3-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA //