Array 1 75363-74542 **** Predicted by CRISPRDetect 2.4 *** >NZ_WMHF01000002.1 Flavobacterium columnare strain SP1809 NODE_2_length_149367_cov_291.302170, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================================================== ================== 75362 36 97.2 82 ......A............................. CCGTTTCAAAACATTAGTCATCGTAAGTTGGTTTACAAACACCAAGTTAATATTTATTATAGGTGTGTTTGTGAATCTCCCT TAATA,T [75348,75359] 75238 36 91.7 30 C.G..C.............................. CAGTTTCTTAAAACTTGACCAGGACAATGG A [75231] 75171 36 100.0 30 .................................... TTTGATTAATTCTCTCCAGTGTTACTTTGT 75105 36 100.0 30 .................................... CTGTATAAAAAGATTTCAACGGCTTTAAAT 75039 36 100.0 30 .................................... ACACAATTTTTTTAATTTAGGGGGTACGGG 74973 36 100.0 30 .................................... CAAATTAAAATTATGGAAACAAAAGATTAT 74907 36 100.0 30 .................................... TCAGAGCCTTCTATCCAACAGGAGTACCAG 74841 36 100.0 30 .................................... CTTTCACATCGTCAGGGTACAGCGATAAGT 74775 36 100.0 30 .................................... GTAAGTACAACGGTTCATCGTTAGTACCAT 74709 36 100.0 30 .................................... AGATAAATCGAATCTCCTTTTCTTCCATGT 74643 36 100.0 30 .................................... TTTCAAAAGTTGGTCATTATACTTCACCTT 74577 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================================================================== ================== 12 36 99.1 35 GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT # Left flank : GAAATGCTTGCCGAATTTAAAAAACGATTAAATGTATAATTATGATTTAAGCGAGCAAGCTAAAATCTATTTGTTGCGTATTTATGAATATAGAATTGGTCAGTTTGGTCTAGACCAAGCTGATAAATATTTTGACATGATGCACGATTGTTTTAATAAAATTGCTAAAATCCATATTTATTCCCTTTGGCATCAAATATTAAGTCAAATTATTACAAATGTGTTTGCGGAATTGACACCATCTATTATAAAGTTGTTACAAATGGAGTTATCATTACAACAATAGTCGGAAGGCAGGATTTTGAAATTCAAAATTTAGTTCATTGACATACAGTATCAAATCGCAAATAACCAAACTTCATACAGATTGGTTTGATTAAAGATTAGAAACCGAGGGACGAGTTTCGGCGAAGTCAAAACACGAAATTACTTATTCCCTGAAACAATCGCACGAACTGGTTGTGGTTTACAAACACCAAGTCAATATTTGTTATAGGTGT # Right flank : AGTTGATGTTTTATCTTCTAATTATCAAATGGTTAAGTTTTGATATCGTTAAAAAAAATGCTTCTTTTTTGGGGTGCTATGCCAAAATTGAAGCATTTTTTTATTCCTAAAATAATTCAAGTTGAGTGGGTTGAGGTCCCGAAGGAATTTCTACTTTTCCCCAGAAATTTTGTATATTCCCAAATTGCTTGTCTGTAATTCGTAATATACTTACTTTTCCTGAAGGAGGTAGGAGTTTTTGTACACGTTTTTCATGTACATCAGCACTTTCGCTACTCGCGCAATGTCGTATATACACCGAGTATTGCATCATACTGAATCCATCTTTCAAAAGTTGGTTCCGAAAGCCAGAAGCATTTTTTCGGTCTTTTTTAGTATCAGTAGGCAAATCAAAAAATACAAACAACCACATGATTCGATACCCGTTTAAATCCATAATTTTGGGTATTTTATCTTTTTGCGCTCCCCAGCAAAACACTGTTGCAACGAACTAGCCGTTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 58420-59030 **** Predicted by CRISPRDetect 2.4 *** >NZ_WMHF01000019.1 Flavobacterium columnare strain SP1809 NODE_19_length_59467_cov_248.095740, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== =================================================================== ================== 58420 24 66.7 16 .GTA.T..T......C.AC..... CTTACCAACACTTAGG G [58441] Deletion [58460] 58461 24 100.0 42 ........................ GTATCTACAACTACTCTGTTTTTATTCTTTGTAAAAACTCAG 58527 24 100.0 42 ........................ GTATCTACAACTGTTATTGCGTCTTCGATAGAAGCAACAAGG 58593 24 100.0 67 ........................ AGGGACAAGCGTTAAGAAATAGTCCAGTGGACTATTTTAGCGATGTAGCCAGGAGGCGCGTGGGCGT 58684 24 70.8 40 ..AA...TT.AA..T......... GTATCTACAACATATTCAAAGCAAGTACTGCATTATAGCG AACC [58688] 58752 24 100.0 67 ........................ AGGGACGAGCGTTAAGAAATAGTCCAGTGGACTATTTTAGCGATGTAGCCAGGAGGCGCGTGGGCAT 58843 24 75.0 41 ...A...TT.AT..T......... GTATCTACAACACCATCATCCCATTAACGAACGACTGACGG AACC [58847] 58912 24 100.0 67 ........................ AGGGACAAGCGTTAAGAAATAGTCCAGTGGACTATTTTAGCGATGTAGCCAGGAGGCGCGTGGGCAT 59003 24 75.0 0 ...A...TT.AA..T......... | AACC [59007] ========== ====== ====== ====== ======================== =================================================================== ================== 9 24 87.5 48 TTGGGAAAGCCCTTATTTTGAAGG # Left flank : TTAAACTTTACATTACAAAAGCCTTATTAAAAAATGAATCTGAAATCATAAATTTAGAAAACATAGATATTGAAATTTTAATTAAATATTATGATTATAATACTGAAAAGTTGAAGGAAAAAATAAAAAATATGGATGAGGATGAAAAAGCCAAAATAGTTAATACTAAAGAGAATTATAACAAAATAACCAATGTTTTAATTAAAAAAGCACTTGTTTTAATTATCATTCGCAACAAAATGGCGCACAATCAATATCCTCCTCAATTTATTTACGATTTAGCGACTCGTTTTGTTCCAAAAAAAGAAGAAGAATACTTTGCTTGCTATTTCAACCGAGTTTTTGAAACCATAACAACAGAATTATGGGAAAACAAAAAGAAAAAAGATAAAACACGGGTCTAAATACAATTGCTCTTTGACATTTTAAATTAGGATTAAAAAAATGACTACATTTGCAGTGATTAAAACAAAAAAAGTTCATTTTTTTGTATAAAAAAT # Right flank : AGGGACGAGCGTTAAGGAAGCTGTCCAAAAAGTACTAAATCAACATCCAGTTTGTCACTCCTACGTAGAAGGAGTCTCATAATCAATAGCATGTAATTTCTTCCTTTGGTCAAAATCACAAGATTGCGAACTTTTTGGACAGTCTCTAGCAAAATAGCGAGCAGGCGTTTGAAACCAAATTTAATTATTTAAAAAATAAATAAACCATAATTCTTATTCATAGAAATACCTCTTTTTTAAAAATAACAAAAACAAACCTATAACACAATCAAGTAAATATGATCCATATACTGCCTCCTAAACTTCCTTATAATTTAACCTCAACACCTAAGATATTTTTGTAAATTTGAATCATCAAACCATTTGGAATCATGAAGGCTAAATACATCAATCCGTTTACCGACTTTGGATTTAAAAAAATATTTGGGGAAGAAGCC # Questionable array : NO Score: 4.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.38, 5:0, 6:0.25, 7:-0.98, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTGGGAAAGCCCTTATTTTGAAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [9-22] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA //