Array 1 18960-19170 **** Predicted by CRISPRDetect 2.4 *** >NZ_NARV01000048.1 Gilliamella apicola strain N10 NODE_48, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 18960 29 100.0 33 ............................. CAATCAGGCTAATCAACTAATGCAAATGCGCGC 19022 29 100.0 32 ............................. ATTTACAGGCTCAAATAGAGGTTTTGGAGAGC 19083 29 93.1 30 ...........G..T.............. GCTAGACACACACTACACAGACCCAGAGCT 19142 29 79.3 0 ............C..........TTTT.T | ========== ====== ====== ====== ============================= ================================= ================== 4 29 93.1 32 ATGTTCCCTGTATACACAGGGATAAACCG # Left flank : TAACATTAACTTTATAGCATTAATTAGCCAGTAATAAAAATACCTGTTAAATCAAAACAATTTGCTTAAAAAACAACCCAAAAAGTTGGTAAAATTTTAATTCTCCTATTTTAATTATAAAACAAAAAGTTATAATTAGAGTGTTCCCTGTGCACACAGGGATAAACCATTGGAAAAACGCTAAAAATCAATCTTAGGTGCATGTTATCTGTACATACAGGGATAAACCGTCGATGTGTTAATATTACATAGCATTTTTTTGCTATTCAAAAAATCGCAATTCTATATTTTAATTTTATTGTTGACCATTTTTTAATTACATGAAAAATATAAATTTATCGGTAGAATCCCGTAGAATCTAATTTTAACTTCCATTAATTTTAATTAATTTAATAAAAACATAGTGTTATGAATTATGATTTTGATGAAAAATATCTCAAAAAACCGGTAGAAATTTGACGGTCAATATTTTAATTATAAAACAATATGTTATAATTGGT # Right flank : TTTTATGCAAGATTTTGCTAATTTTTGTTAAAAAGTTTCAGGTTATGCCTACGTTTCAGTATAAAAATATATAAAATTAATCTAGTTAACTGATCAATTATCCGATGCACAGTAATACGTTATCAAGAGACATAATAACTAATGTATTAAAACCATACTTCAACAAAGTGAACAGTTAAAGTAACGTTTTGTTAGTTCTTGATGTTCATTGGTTATCTTCGTACAATAAAAAAAATTTTTATTTTGGTTTGTTATGCAATTACATTTAGTGGTTAATACGTTTGGATCTGACTTGCAGCATCGTTATGGAGAAAAGATCTATAAATTAACGTTACATGGTGGATTTAGTTGTCCAAATCGTGATGGTACTCTTGGTGTTGGCGGTTGCACTTTTTGTAATGTTGCGTCAATTATCGATGAATCTATCCAAGTTAAATCTATTTCTGACCAGCTTGCAACTCAAGCGCATCAAATGAAAAAATCAAAGCGTTATCTTGCCT # Questionable array : NO Score: 5.51 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCTGTATACACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: F [matched GTGTTCCCTATACACATAGGGATAAACCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 6145-6661 **** Predicted by CRISPRDetect 2.4 *** >NZ_NARV01000006.1 Gilliamella apicola strain N10 NODE_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ===================================== ================== 6145 26 100.0 35 .......................... CCGGTAACTAAGGTCAATAACACGGATGTTACGCT 6206 26 100.0 35 .......................... CCGGGTTAGAATTTAGTACATTTGCAGAATTAAAA 6267 26 100.0 35 .......................... CCGTTAGCAGTTTTCATAATATCATCAATAGATTC 6328 26 100.0 35 .......................... CCGACACGGATATTACCATAGGCGGAGATTTCGGT 6389 26 100.0 35 .......................... CTGGGCGTATAATTGATCGCCCTTAGTTAATAGGT 6450 26 88.5 35 .............G..T.T....... CCAAAAATGAAATCGATTACAGTTTTTGTGAAATC 6511 26 92.3 37 .........A......T......... CCGCTATAGTAATGGTACGCACAGATAATGCGTACGT 6574 26 96.2 36 ..............G........... CCGGTTATATATTTGCACTAAATTACGCCCTTCGGC 6636 26 96.2 0 ........................T. | ========== ====== ====== ====== ========================== ===================================== ================== 9 26 97.0 36 GTGTTCCCTGTATACACAGGGATAAA # Left flank : GCTTATTGAAGAAGTTTTGTCCGCTGGTGGTATCGAACCGCCTCTACCACCTGATGATGCCCTGCCACCCGCTATCCCAGAACCTCAATCTCTAGCCGATAGTGGCTTTAGGAGTCGCTAATATGAGTATGTGTATTGTGGTAACTGAAAATGTTCCACCACGATTACGTGGACGTTTAGCAATTTGGTTACTTGAAATTAGAGCCGGAGTTTATATTGGTGACATATCAAAACCAATAAGAGAAATGATATGGCAACAAATTGTTAAACTAGCAGAAGAAGGCAATGTTGTCCTTGCTTGGGCGACTAATACAGAATCAGGATTTGACTTCCAAACTTATGGCGCTAATAGAAGGGTTCCGGTAGATTTAGATGGACTAAGATTAGTCTCTTTTTTACCTATTGAAAATCAATAGGTTAACGTTCTTTAAAAAATTAAAAAAATTGGTAGATTTTTGGGTTGCCAATAAATCTAAATAAAACAATTATATATATTTAGA # Right flank : ATAGTTAGATTAATTAGGTAAAGTAATGAAAGGCTTTTAGCTACAGGGTTATAAGCATATCTTCTCCTTAAAGTCTTAATAACGTTTTAACTTTATTTCTTTACCAATAATAGACATATATTTACTTTTATATTTTCATTAACATAAAAAATCGAATAATATTTATTAAAAATCTTGGATAGCTGTAAAATTCGTTTTAAAACACTAAAAATAAAGGTAACAGTTAACTAACTAAACTAATAATCAAAAATAGCGTACAATAGCGCGATATTAAACATATGATCATCATAAATAGTTTAGGAATTTAGCATGACAGGCAAATTTATTGTCATTGAAGGTATTGAAGGTGCGGGTAAAACGACAGCAGTCAATACCGTTGCTCGTATTTTAAATCAATATCATATTTGCGATTTACAATTTACTCGTGAACCAGGTGGTACACCAATTGCTGAAGCATTACGCAATCTTATTAAAAATGGTTTAGATGATGAACCTTTGAC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTGTTCCCCGTATACACGGGGATAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5778-6352 **** Predicted by CRISPRDetect 2.4 *** >NZ_NARV01000105.1 Gilliamella apicola strain N10 NODE_105, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =================================== ================== 5778 26 100.0 35 .......................... CCGCTGATTACATCCTCATTGGTTGGTTTCGCTGA 5839 26 100.0 35 .......................... CCGACCAGTGCATTAAACCAAACTCTGCCAACCAT 5900 26 100.0 35 .......................... CCGATTGTAAATCTCGCAAATAGATTGAAAAAAAA 5961 26 100.0 35 .......................... CCGTCGTGGCAATTATAGAGGTTATGCAACGTTTT 6022 26 100.0 35 .......................... CCGGTCTGCTGAATTAGAGTACGCACGGTTATCAA 6083 26 100.0 35 .......................... CCGCGCGGAATACTAATTATAAAAAAATTTTCATT 6144 26 100.0 35 .......................... CCGATGTGAGCATGCCCTTTGTTTGTAAATCGTAT 6205 26 100.0 35 .......................... CCGAACGCAGTAAATATTATGCTGAATTCAGCCTT 6266 26 100.0 35 .......................... CCGATTCTTTTAGAGCTTTAACACCACAAAAAGAC 6327 26 100.0 0 .......................... | ========== ====== ====== ====== ========================== =================================== ================== 10 26 100.0 35 GTGTTCCCTGTATACACAGGGATAAA # Left flank : TTTAAATTAAACTTAAGGTGAATTTAATTTCATCAGAAGAGTAAATTATGATAACCATGACGATACAATTACTAAAAAAGTTGATATTTGTATTGGTTGCCGAGAAAGTCAGGTATTTCCTCTATATAGGGGTAAAAGATGTCAAAAAGTTTCAGGTTAACCATACGTTTCAGTATAAAAATCAATAAACAATTTAGCTTAACTTAACCTTATGTTCCCTGTACGCACAAGGATAAATCGGCAGGCATCAATATTACATAGTATTTTTTACTATTCAAAAAATCACAATTATATATTTCATTGTTTACTTTTTTTAATTATATGAAAAATATAAATTTATCGGTAGAATCTCGTAGAATGAAATTTTAATTTCTATTAATTTTAATTAATTAAATAAAAACATAGTGTTATAGAATGTGATTTTAATGAAAATATCCCAAAAAATCGGTAGAAATTTGACAGTCAATATTTTAATTATAAAACAGTATGTTATAATTAGA # Right flank : CCAATATATTCTATAGATAAAACTCGTTATTATTAATAAGAACAATATTGTTAATTTAGGGATAATTTTTCAGGTAAGCGTTTGAGAATGATAACTCAAAAAAAATTATAAAAAATCTTCTAAAAAAGGGATTTAATTATCATAAATCAAATGATATGGTTGATTTCTCGAATCTTCGAACTTTTCCCAAATCTTATGGGTCTTACGATAATTTTTTGAGTATCAAACAATTTATTTTTTTAGAAATGGTACTCAAATATGATTTATTGCCAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTGTTCCCCGTATACACGGGGATAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1371-1521 **** Predicted by CRISPRDetect 2.4 *** >NZ_NARV01000093.1 Gilliamella apicola strain N10 NODE_93, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1371 29 100.0 32 ............................. GGCAGGAAACTACGAGCGCTGAACCGTCGCTA 1432 29 100.0 32 ............................. AGCAGAATAATGGGCGATTTGTAACAATACCT 1493 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 100.0 32 ATGTTCCCTGTATGCACAGGGATAAACCG # Left flank : AACTGACTAATTTCTATATTAGATTAGTCTAGAAAAGTATTTCTTATACATATAGATAAAACAGCTTTATTTGTAAATTAACCTAATTTAGGTTATTGGCATATGCATTAATTTATCATTTATCTATAATAATATATGGTTTTTTGTGTACCCAGTATGTACAGGGATAAACCGAATATGCCGAGCAGGCGAGAAAGCTGTCTCTGATGTTCCCTATATATACAGGGATAAATCGGGGATGCGTCAATATTACATAGCATTTTTTTGCTATTCAAATAATCGCAATTCTATATTTCATTGTTTACTATCTTTTTAATTATATGAAAAATATAAACTTATCGGTAAAATTTCGTAGAATCTAACTTTAATTTCCATCAATTTTAATTAATCAAATAAAAACATAAGGTTATAAATACTGATTTTGATAAAAAATAACCTAAAAAATCGGTAGAAATTTGGTAGTCAATATTTTAATTATAAAACAGTATGTTATAATTGGT # Right flank : GCCCTAGTGGCGGTTTTTCATTGCCCTTAATTTTTAAATAACATACCATTACCTAAAAAAGGAGATGGTATGAAAAGAATTGCATTACTAGGATTGGTTTGTTTTGCGTTGTCTGGTTGTGGTGATGATGGTGATGATGGTGGCGGTAAAGTTACTAATGAGTTTTTGGTTGGTAAGTGGGAGTGTAAATTGGACGGTTACAGATCAAAAATGAAAAATGGAAAATTTACTGATTATGTTAGCGATGGGTTTAATATAATAAGGAAGGTAGAATTCAAAATAGAAAATAATAAACTGTATAGTATAAGTAAAACTGAAATGGATGGACTTAGTTTTTGGGAATCGAATGATTGGGATGAAAGTGATATAACTATTACTCATACGGGGCAAACAGTAGAGAAAAAAGAAAATAATTTAATAGAAAAATCAACCAATTCTCTAATTAAAAAATCACATGATACATATTTAATGATTGAGGAATATATTAAAACTCCAAATGA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCTGTATGCACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTGTTCCCCGTATGCACGGGGATAAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 693-364 **** Predicted by CRISPRDetect 2.4 *** >NZ_NARV01000176.1 Gilliamella apicola strain N10 NODE_176, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =================================== ================== 692 26 100.0 35 .......................... CCGTATCGCGTAGGGCTGTTCGAGCTGGTGCTGTA 631 26 100.0 35 .......................... CCTGATGCAGGCCGTAATACAGGGGATTTGCATGG 570 26 100.0 34 .......................... CCGTAACGGCGGGAGTGTATGTTTCCATGAGTTC 510 26 100.0 34 .......................... CCGGAAAGGGGGGGCGTTCGCCATACCTAACATG 450 26 92.3 35 ............C.T........... CCGGCAGAACTAGACACAGAAGCAATCAGTGGATA 389 26 88.5 0 GC...........G............ | ========== ====== ====== ====== ========================== =================================== ================== 6 26 96.8 35 ATGTTCCCTGTATACACAGGGATAAA # Left flank : ATGTTGAGCTAAGATAAACGTTTACTATTAATATTGAGTAATAGCTTACAAATAACAGCGTTTATAAAATTATTTCAATTCAAAAAAATATATTGAATTACTCAAAATTACAGAAATGCACTTTCAAAAAATGAGTACTTGAGATTAATTTGTGAAAATTTTATAACTAAACTACATCAACAAACAACTTAAAAAGTAGAGTTATTTTGATAACAACAAATCATTAAAAGCAGAACAATAAAAATTCCCATTTTTTAACTAAATGAAAAATATAAATTTATTGGTAGAATTCCGTAGAATCTAATTTTAATTTCCATCAATTCTAATTAATTAAATAAAAACAGTGTGTTATAAATACAGATTTTAATACAAAATAGCCTAAAAAATTGGTATAAATTTGGTGGTCAATATTTTAATTATAAAACAGTATGTTATAATTGG # Right flank : ATCATAATAGATTAGAAGTTGTTAATTTTATATGAATGGATTCTAAATATTATTTATACGACATATATTTGATTGATTAATGAGTTTTTAAGGTTTGCATGGTAAAAGTATAAAATAAATGAATTTTTACCTATCAGTATAGATAAGCAACTAAACTTATAAATACAAAGTTATTTTATTGATTATGCTCAATAGCGCTTACAGAATTTGTTTTGTTTATAACTGCATATTACGATCTCTTTCCATAAAATAGTTTATGAAAAGTCTTCATTTCAAAAGGAATTAATAATTTATTCACTTAACTGCTTTGGTGGTTTTTTATTGCCCAAATTATCTAAATAAAATACTATTACCCAAAATAAAA # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTGTTCCCCGTATACACGGGGATAAA with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //