Array 1 2395748-2399773 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEKBX010000002.1 Faecalibacterium prausnitzii strain Fp4 SD0354_49_b_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 2395748 33 100.0 35 ................................. AGCTATCCCTGCGGCGATTGCGGCAAGGAGACCAC 2395816 33 100.0 35 ................................. TTCAAAAAATCGTTCCCGCTGGGTTCGGGCCGGTC 2395884 33 100.0 33 ................................. AATCAAAATCGGAGGATAGTATTCTTGTAAGGC 2395950 33 100.0 35 ................................. CAACATCGCCCGCCTGAAAAAAGGCAAGGCTCCCC 2396018 33 100.0 34 ................................. GTCATTGCTGGCGTCCCCTTTCAAGATCCAGACC 2396085 33 100.0 35 ................................. AGGAATCTGCCGCCGCCCTCGGTGTGCTGGCCAAC 2396153 33 100.0 35 ................................. CCGAAAGGAGTGATTCATCCCATGAGCAAAGAATC 2396221 33 100.0 35 ................................. ATCGACAACCTGGGCAGTATTTTTGACAGCAACGT 2396289 33 100.0 35 ................................. TCGACCAGAGAGCGACAGTAGGAGCAGGCGTCCCG 2396357 33 100.0 35 ................................. GGCAGGGGAGTGGCAAGCCCTACTGTTCCCATGCC 2396425 33 100.0 36 ................................. ATCCGCCAGCTGGGTGAGCTTGTCGCACACAGCTCG 2396494 33 97.0 35 .........T....................... CATCTGGCCGCTCAGCCCGCGCACTGCGTCGCGCA 2396562 33 100.0 36 ................................. TTGAGCTCTTCCCAGGTCTTGATCGCCGAGGTCCAG 2396631 33 100.0 36 ................................. TCGCAGTTTGTCCTCGACCTCGATACGAAACTGGGC 2396700 33 100.0 34 ................................. TCAGGCATGTTTTTTCCTCCAAATAAAAAAAGAA 2396767 33 100.0 35 ................................. TTCCTCCAGCGGAAGAATCGACTCGCCGCTGGACC 2396835 33 100.0 33 ................................. AGGAGGAACCCATGAGCACTCAAGCGGTCTGAG 2396901 33 100.0 35 ................................. AAAAAGCAGTCACCAAATGGGGCGACGCCAGCAAA 2396969 33 100.0 34 ................................. TTCAGCCGGTCGGCCTGCGGACGCCGGACGTCGA 2397036 33 100.0 34 ................................. ACGGCTGCGTCGCTGAGCGAAGCCATCACAAAAC 2397103 33 100.0 34 ................................. TTCAAAGCCGTGCTGTACAAGGACGGTAAGGCAT 2397170 33 100.0 35 ................................. ATAAAAGAATTATCCAAAAATGATGGGTATGATAT 2397238 33 100.0 35 ................................. GGCATGCGTTTGCGTCGGACTTATATGACGCAGGC 2397306 33 100.0 34 ................................. TTTTTCCATCCGCTCCGTGAGCTTTTGCGCAACT 2397373 33 100.0 34 ................................. CTGATCCAGAAGGGTATCCAGCCGGATGGTGTTT 2397440 33 100.0 36 ................................. CGCAGCAGCCTGTCAATCCTTACGGCGGCATGGGCA 2397509 33 100.0 37 ................................. TTCTGGATATAGCCCAGAATAGACGGACCGACGTAAA 2397579 33 100.0 35 ................................. GGTCTGCGTGACGGTGAAATCTTCCGAATCTGACT 2397647 33 100.0 34 ................................. TTCACAGCTCATTTCCAATACCTCGTTTCTAAAA 2397714 33 100.0 35 ................................. ATTCTGGTCATTTCCAAACGAATGCAACTTATCAA 2397782 33 100.0 33 ................................. GCTCGTGTTGGCCTGCTTGTCCAGATCCATGAC 2397848 33 100.0 34 ................................. ATCTCGCGCGTCCTCCTTAGTAAGCCCCAAATTC 2397915 33 100.0 34 ................................. ATTTTGGTCGTCGAAGCGGAGACAAAGGCCCTCG 2397982 33 100.0 35 ................................. TCCAAGTGGTGAATGGTGCAACAAGGATTTTTGGC 2398050 33 100.0 35 ................................. AGTTTTGCGTTATGCTATCCCACCGCCGTGTGCGA 2398118 33 100.0 34 ................................. ATTGTGTCTATATATTACCATACATACGCATGGT 2398185 33 100.0 36 ................................. TTCAGTGCCGCCGGGGAGAGCTTGGTATAGTCCGCG 2398254 33 100.0 34 ................................. ATTTGTGCGCATCGGCTGCTGTAACCGCTGGTAC 2398321 33 100.0 36 ................................. AACTTCAATTTCGCCGGGGTGCGGCCCAATCCCGCC 2398390 33 100.0 38 ................................. TTGTTCACAGACTTGTCGAGGGATGCCAGCGACTGCTG 2398461 33 100.0 34 ................................. ACCCAGTGGACCGCCCTCTGGTACGTTGGCGGCA 2398528 33 100.0 34 ................................. ACGACTATTCCACGACTATTTCAGAAGCTGTTAC 2398595 33 100.0 35 ................................. TTCCCAGTAGGCTTGCGCCCTGGGACAGGTGCAGC 2398663 33 100.0 34 ................................. ATATTCTCATCAAGGAACGGCCTCATGGATTCAA 2398730 33 100.0 34 ................................. ACCTCGGACAGGTCAGCAGACCAGCGAACGTCCC 2398797 33 100.0 33 ................................. TTCCAATCTCCACACAAGACGGCATAGACATGA 2398863 33 100.0 34 ................................. TCTTCCACATGTGCAGGCAGTACGGATGGGTGTT 2398930 33 100.0 35 ................................. GCTTAATGGCTTTTGGGAAAGACAGTTCCAGAAAG 2398998 33 100.0 34 ................................. TCTTGCCCGGCGGCGGTTTTGAGCGCTAGGGCCT 2399065 33 100.0 35 ................................. TCACTTCAGAGGTCTGGCCTTCCTCATCGGTCACG 2399133 33 100.0 35 ................................. AGCTATGAGGTGGACACCAAGACCGGCCCGCTGAC 2399201 33 100.0 33 ................................. CCGTTCATCCAGACAACCGTGTTGGTTTCCTCC 2399267 33 100.0 35 ................................. CTCTGTGGTGCTGTCGATGTCGACGATGCACTCGC 2399335 33 100.0 34 ................................. GCCTCGTTGACCATGGCTTGCAGCATATTGCGCC 2399402 33 100.0 35 ................................. TTGCAAGTCGGTAGGCCATCGTCGAAAATTGCCCC 2399470 33 100.0 34 ................................. CTATGTGAAGAAAACCAACCCGCGCACTGACCTT 2399537 33 93.9 34 .....T..............T............ GTCGTCGCCTCCATTCGCAGCAAAACCAGAACCG 2399604 33 100.0 36 ................................. CACACTGGCCGTGGTGCCTACGACAATGCCGTGGCA 2399673 33 97.0 35 ............A.................... ACGGACATCGACTGGCTGGGCGTTGGTAAGAACGT 2399741 33 97.0 0 ..................A.............. | ========== ====== ====== ====== ================================= ====================================== ================== 60 33 99.7 35 GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT # Left flank : CCATTCTTCTGGAAGTGAGGTTCGTCTATGCTGGTCCTGATCACCTACGATGTCAACACTGAGACCGCTGCTGGGCGCAAACGCCTGCGCAAAGTGGCCAAAAAGTGCGTGGACCACGGGCAGCGGGTGCAGAATTCTGTCTTCGAGTGCCTGCTGGACGCCGCACAGTTTGCTGTTCTGAAGTCCGAGCTTGCCGCTCTCATCGACCCCGATCTGGACAGTCTGCGGTTTTATCAACTGGGCAACAACTATAAGACCAAGGTCGAGCACATCGGAGTTCATCCCCTGTTTGAATCCGGAGACGTGCTGATCTTCTAGCCCTCTCCCTCGGTGCGAATGGAAAGTGCTCACCCTTTTTCCGTCTCCTTCGCACCATGTTTTCAAGGCATTCTGTGCAGATCGCGGCTCTTTTTTCGGATGTTTTTGGAAAAGCTCTTCCAAATCTGTGCAGATCGTTTTATAATGAAACAAAAGCGGAGATGTTTTTCTCCGTTTTTGCT # Right flank : TGTGTCGGTGGTCTACCTGTCCGATGATCACCTGCGGTCGCCCTCCTCGCGGACGGCGGAAGATGCCGCCCGCCGGGGTGAGCACATTGGCCATCTCATTTTCCTGCACGACAGTGGACAGATACCCGCTGTGGCAGTGATAACGCAGCAGGCCGACCCGGCCGAGCTATGCTGCAAAGTGCATCTTTTAAGATGACAATTTCCTTGTCATCTCGCTTCGCTCGAATCTTATAGCTAAAGCATTTTCTACTCCACCAGCGGAGCTGTTGGTTGTCGCCCGCTCAAGCTACTCAAAACAAAAGCAAAAGGCGGCATGACCCGTTGTATGGGCCACGCCGCCTTTTGCTTCAGGGCTCGTTTGCCTGCAGCACACAGGCACAATACCCCGGTTCGGGCTGATAGCAGTGGATGGTCAGGTATTTGTCCACCTCCGGGCTGTAATCGTGGAGGGTATGCTTCGTACCGTTCAGCGCCACATCTGCATAGGACACCAGCCACTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCCCTCCACACGGAGGGCGTGGATAGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.60,-8.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 2708267-2707932 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEKBX010000002.1 Faecalibacterium prausnitzii strain Fp4 SD0354_49_b_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2708266 29 100.0 32 ............................. GTCGAGGGGCCAGACCTGGGCGCGGAGATTGA 2708205 29 96.6 32 ..............T.............. CACTTCTGGTGGCAGGGCAAGCTGTACAGCCG 2708144 29 96.6 32 ............................T CATCACGCACATACTTCAGTTCGGAAGTGTCC 2708083 29 100.0 33 ............................. AAGTACAACAACGGCAAGCTGCGCTGGCTCATG 2708021 29 96.6 32 .........................C... AACAACGCCGCAGACAACAGCGTGAGCAACGG 2707960 29 75.9 0 T....................C.T.CGAA | ========== ====== ====== ====== ============================= ================================= ================== 6 29 94.3 32 CTTTTCCCCGCATACGCGGGGGTGATCCC # Left flank : TGGAGCCGGGCAGTTGCTGGCAGTTCCGGCTGACTGCAAACCCCACCAAAAGCTGCAAAGACACCAAAAACCCCGCAGCGCGGGGAACTGTGGCCGCACATTGCACGACACAGTACCAGAAGCAGTGGCTGTTGGAGCGCGCTGCAAAGCACGGCTTTGCTCTGCGGGACGAGGGATTTACCGTGACCAGGGTGCAGTGGCAGCACTTTGCCAAGCACGGCACCCGGCCGGTGACCCTGCTGGCAGTGACCTATGAGGGCATTTTACAGGTGACCGATGCGGAACAGTTCCGGGCACTGCTGTGTCAGGGCATGGGGCGCGGCAAGGCCTATGGCCTTGGGCTGATGACCATTATGCGCGGAGGAAACTGAGATGGACGAGATGCCGGGCATGATTCGGCCGGGCCTACAGGCGCTGCCACAGGTGAAAGACCGGATGACGTTTCTGTATCTGGAACACTGCACCCTTGGCCGACAGGACGGCGCGATCACCGTTACAGA # Right flank : AAAACAGCCACAGGCTAAACTAAAAATGAAATGATGTTTCTGGAAAGGAGAACTCTGTAATTTTGGCACTTGCTCAGGCTGCTATTAAAAACCCAAGAGCATAAGGACTTTATGACGAATTATCGTTAAAAATCAAGCAAACAAATAAGGCTCACCGCCAATTTTAGCGGTTGGCCTTATTTGTTTGCTCATGTATGAGGTGAATTGCGTTTAACACGGGGGCGCTTCCCAGAAGCATCACAGATACACCTCCACAGTCAGGTCGGTCCACGCTGCACGGCGGAACTGGTGGGGCATCTTGTTGGCTTCCCGGTAACGCTTGGCGGTTTCAAAGTCGATGGTGAAGGTGAGGATGGGCTTTTCCGATACAGCCATCAGATCGGTGCGCTCCTCTTTGGACTTCTTGCAGCCGGTGTTCAGCTTCCAGCGGTAGGAGTAATCGGCAATAGGGGTGACGACTTCAACGAACTGCTCAATCAATTCGGGCGCAAGACAGGCAC # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCGCATACGCGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCATACGCGGGGATGATCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //