Array 1 782-105 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZDL01000015.1 Haemophilus haemolyticus strain CCUG 24149 contig_22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 781 37 100.0 35 ..................................... AATAAATCGTATTCTTTACCTACTACTAATGGTTG 709 37 100.0 35 ..................................... CGTACTCCCTCTTCAGAGGTTTCTGTTGGTTTTGC 637 37 100.0 34 ..................................... CATTTCTGCTTCTACTTTGATATCTACTTCAGTA 566 37 100.0 34 ..................................... CTCGAGGTATTCATCCGGTGCGTGGAACTGCTCG 495 37 100.0 35 ..................................... ACTGCATCAATATTGCCATTATCGCACATTCTTGC 423 37 100.0 35 ..................................... TCGCTACCCCCTGTACATTTATGGCGCTATTTTCT 351 37 100.0 31 ..................................... AAATCGTTGCGAAGTTCATCAAGGAATTTAA 283 37 100.0 32 ..................................... CCGCAAGTCTTACAACTTGCCCTAAACGATAA 214 37 100.0 36 ..................................... TATAACCAAAAAATCTAACTAATAAATTCTTAATCA 141 37 97.3 0 ...................................G. | ========== ====== ====== ====== ===================================== ==================================== ================== 10 37 99.7 34 GTCGAAAGACATTGCCCTGTTCCAAAGGGATTGAGAC # Left flank : TTTGCTTCCTTGATTGATGTTTTCAAATAAGCTAAACAATTTTAGATTGTCTTGAGTTTCAGTTTTTTTGCCTAAAACAATGTTTTCTGCTTGGGGTAAAAAAGAAGATATATCGATTGGTTGAATAGGAAAAGAAGGCAGAGATAAATGATGCTTTTCTGAGAGTTGCTTCAAATAATGATGCCATACAGAAAATGCAAGAGAAATTGTGTCTGACATAATTGCTCCATTTAATGAAAATTTGAATGAAGTATAATCAAATTTTGAAAAATTGTCAGCAAATACAAATTTGTAAAATTTATTTTTATTGTAGCCAGGACTGGCGCATCTGAAAAACTCTGTTAAAATACACCGCACTTTTGACTGAGTTTTGAAAAAATAAGAATGATAAAAATCGTTCAATATTTAATCAAATTAATACCTAACTCTTCAGGCATCAGAAAAAGTTGGGAAGTGGCTCTGGGAAGCCTTGCCACACAAGGCTTGAACACCCCACTGCA # Right flank : CGACTAGCCAAATAGAATATGTCTTTAAACGTTATATTTCGTTCTTTAAACCGCCCTCGTGGCGGTTTTCTTTTTTACAAATTTATATTTCAGCTACACCCACAT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAAAGACATTGCCCTGTTCCAAAGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.30,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 159383-158490 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZDL01000030.1 Haemophilus haemolyticus strain CCUG 24149 contig_8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 159382 37 100.0 36 ..................................... ATTTAATAGCCATTCTTTTATATGCTTTGGCTAATT 159309 37 100.0 33 ..................................... TTCTACGGTTTCTCTCTTCTGTGTGTGTCTAAG 159239 37 100.0 33 ..................................... CACGAATCAATGGGTCACGTTGTGCATTAGTGT 159169 37 100.0 35 ..................................... TCAACGGTATCAATACGATACAAAATAAATCTTTA 159097 37 100.0 35 ..................................... ATTATCGTATATTTCACCTTTCTTTAGAGTGTATC 159025 37 100.0 33 ..................................... TACCCGTAGGCTTTTCCATTAAGCCTTGTTCTT 158955 37 100.0 33 ..................................... GATCGGATCTGATTAGATTTTGTAAAGTACAAT 158885 37 100.0 33 ..................................... ACACAGTGACGAATCGATTGAATCGGTAAATTA 158815 37 100.0 36 ..................................... GCAACATCGCAAAATGTGCCGACGGTATAAGGTTTA 158742 37 100.0 36 ..................................... AAAGTTTTGTCAAATTTTATGCCCTGCAAGATGCCT 158669 37 100.0 36 ..................................... TCTCTAATACCTAGCACGATAGGAATACCTTGCCAT 158596 37 100.0 33 ..................................... TGTCCACGTTGAAAAATAGGATTTAAATCAAGT 158526 37 94.6 0 .................................T..G | ========== ====== ====== ====== ===================================== ==================================== ================== 13 37 99.6 34 GTCGAAAGACATTGCCCTGTTCCAAAGGGATTGAGAC # Left flank : TTTAAATTCTAGGAAGAAAAAATGGCACAATATTTAATTGGTTACGATATTGCCGATCCTAAACGACTACAACGGATTTATCGTCGAATGACAAATTATGCGACCCCTATTCAATATAGTGTATTTATTTTGGATGGCACAGAAAAACTACTTAAGCAATGTTTAGCAGAGGTTATGTTAATTTTCCATAAAAAGGAAGATGATTTGCGCGTCTATCCCTTACCAGCCAATGCGGCTCAATGGCGACTAGGTAAATCAAGTTTACCTGACGGGATTTACTGGACGGCCTTGCCCACAGCCTTAACCTTATAAAATGCTACTGGAGTATTTCACAAACTCTGCTAAAATACACCGCACTTTTGGCTGAGTTTTGAAAAAATAAGAATGATAAAAATTGTTCAATATTTAATCAAATCAATACCCAACTATTCAAACATCAGAAAAAGTTGGGAAGTGGCTCTGGGAAGCCTTGCTACACAAGGCTCTAACACCCCACTGCA # Right flank : GTAGATAGAGATTTATGATTAATAAAAATATCGAAAAGCTAAGAGGAGTAATAAAGGGCGTATTGCACGCCCTATTATTTTCAAGAAATGTACTAAGTTATCGGCTAAATTTAGCCGCACTTTTATAAATGTTTCACTCTCCGTTTCACTTCTTCCTGTTTTCCTGCATTAAATGGGCGGGCATCAGGACTGCCTAGATAGCCACATACGCGGCGAGTGACAGATACTTTTGTGCTATCGTGATTGCCACATTTCGGGCAAACAAAGCCTTTACTGGTACATTCAAATTCGCCGGTGAAACCACATTCATAACATTCATCAATCGGTGTATTTGTGCCGTAGTAAGGCACGCGATCGTAGCTATAATCCCACACATCTTCCAATGCTTTTAAGTTGTGTTGAATATTTGGATATTCACCGTAGCAAATAAAACCGCCGCTAGCGAGTGGGGGATATGCCATTTCGAAATCTAGTTTATCGTAAGGATTCACTTTCTTTTC # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAAAGACATTGCCCTGTTCCAAAGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.30,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 201640-201384 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZDL01000005.1 Haemophilus haemolyticus strain CCUG 24149 contig_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 201639 37 100.0 36 ..................................... GTATTCACTTTCTGCACTATGGAAATATTCTAATCG 201566 37 97.3 35 .............T....................... TAGTTAAAGTTACCGCTATAAAGGTAACCCATTAT 201494 37 100.0 37 ..................................... ATCAGGTGCACTGCTTCCGCTTGCTTTGAGTTTCCGC 201420 37 86.5 0 ......C.G.......................A.A.T | ========== ====== ====== ====== ===================================== ===================================== ================== 4 37 96.0 36 GTCGAAAGACATTGCCCTGTTCCAAAGGGATTGAGAC # Left flank : GAAAACCGCTATTGTGTCATAATGTATTAACATTATAAAAATGCTACTGGTATATTAAAAAAAACCTGTTAAAATACACCGCACTTTTGACTGATTTTTGAAAAAATAAGAATGATAAAAATCGTTCAATATTTAATCAAACCAATACCCAACTATTCAAACATCAGAAAAAGTTGGGAAGTGGCTCTGGGAAGCCTTGCCACACAAGGCTCGAACACCCCGCTGCA # Right flank : TAAGTTTTTACTTCTATCTTAAAATTATTGCTAGCTTTGGCATTCCCCAAAATCTCCGTTAAAATAACCCCACTTTTATCGTCTCTTCAAGGAAAGTAATATGTCAGATATTCTCAATAACCTCATTCATCTTCTTAAACTTGAAAAAATTGATGATTTAATCTTTCGTGGTGAAAGCCAAGATTTAGGTTTTCGCCAAGTATTTGGCGGGCAAGTTGTGGCTCAAGCATTATCAGCAGCAATGCAAGTGGCGCCAGAAGATCGCATTTTACATTCTTGTCATGCCTATTTCCTTGCCCCTGGAGACAGCCAATATCCGATTATTTACGATGTGCAAACCTTGCGTGAAGGGCGTAATTTTTCTGCATTACGCATAAAAGCCATTCAACATAAAAATACTATCTGTCATGTAACTGCTTCTTTCCAAGTGCCGGAAAAAGGTTTTGAGCATCAAAATACGATGCCAAATGCTGGTGCGCCCGAAGACTTTACAGATGAAA # Questionable array : NO Score: 2.66 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAAAGACATTGCCCTGTTCCAAAGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.30,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //