Array 1 1957-41 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABTTR010000001.1 Streptomyces sp. Vc74B-19 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1956 29 100.0 32 ............................. CCGCGAGATTTACCGCCGCTGGACGGTCACGC 1895 29 100.0 32 ............................. CGGATCGGCGTGGAGCCCGTCAAGGTCGCCCG 1834 29 96.6 32 ............................C CCAGGGCCACCGGCACCGCGGAGTACTCGGCC 1773 29 100.0 32 ............................. ACCACCCACCGCGAGGGCGACGACCCCGTCAG 1712 29 100.0 32 ............................. TCGGTCAGGCTGGCGCGGGCTTCCTGCATCAT 1651 29 100.0 32 ............................. TCGGTCAGGCTGGCGCGGGCTTCCTGCATCAT 1590 29 100.0 32 ............................. CCATCGACGCCCAGCTCGACCGTGCGCGTCGG 1529 29 100.0 32 ............................. GGGTCTCACGCCCCTTCGAGCCGGGGTTGTCC 1468 29 100.0 32 ............................. CTGCCCCCGCACCTCGCCCCGGGCGTCATCGA 1407 29 100.0 32 ............................. CCACGTCCCCCACACCCCCGCGGGCAGGTTCC 1346 29 100.0 32 ............................. CCGGACATCTCATCCGACCAGTCGCCGAATGT 1285 29 100.0 32 ............................. CCAGCGTGAAGACGCTGACCACGCAGGTCGCC 1224 29 100.0 32 ............................. ACGGCTGCGGCGCAGGATCTGATCGATTCGGG 1163 29 96.6 32 ............................A CCGTGAGTGACTGCTCGTGGGGCCCGTGCCAG 1102 29 100.0 32 ............................. TGGCCGTGGGTCCTGTACACGCCCGTCGACGC 1041 29 100.0 32 ............................. CCGCTCTCCACGATGCGGGTGCCGGCGGTGAT 980 29 100.0 32 ............................. GTCTACGCGAAGCGTGTCCGCGACGCGGTGCA 919 29 100.0 32 ............................. GGACGCCTCCACCCGGGAGGTGGCCCAGTCGG 858 29 100.0 32 ............................. CCCGGCGCCGACCCGGCGACCGTCGCCGTGCA 797 29 100.0 32 ............................. CTGTGCGGGCCGGTGACGGGCGCCTCGTACAG 736 29 100.0 32 ............................. CTCTACTCGTGGGTGCAGGCGGGGATGCCCGC 675 29 100.0 32 ............................. ACGCCCCTCAGCGAGGGACGCGTGCCCAGCCC 614 29 93.1 32 .....T.............G......... GCGATGCAGCTGCAGCGGGTCGTCTCGTCGTC 553 29 100.0 32 ............................. GTGTCCGGCGAGGTCCTGCGGTTCTACGGCAA 492 29 100.0 32 ............................. CCGTTCGCCGTCGTGTACGCGTGGAACGGCGG 431 29 100.0 32 ............................. GTCAGTACCGCGTCGACAAGACGGCCGGCGCC 370 29 86.2 32 ...........A.AG....G......... GAGGACCCGCGAGAGCTGCGGGTCATCATGAG 309 29 79.3 30 ......C.................CCGTT CGACTACTCCGGCCTCGTGTACTTCTCGTA 250 29 86.2 32 ............T.........CAC.... CCTGCATCCGTGCGCTGGCCCGGAAGGGCACC 189 29 86.2 31 ....AA..............A.....T.. CGCTCTGCAGGAGGCTGTCCGCCACCCGGCG 129 28 82.8 29 ...-......T...G...C.......A.. CCGCCGACGACGAGGGAGCCGACAACTCT C,AC [103,105] 69 29 93.1 0 ......................C.A.... | ========== ====== ====== ====== ============================= ================================ ================== 32 29 96.9 32 GTCCTCTCCGCGCGAGCGGAGGTGTGCCG # Left flank : CGCGCATCGTCCATGACATCCAGGCCCTCCTCGACCCTGGCAGCGACCGCGAGGAACCCGACCCCGAGGAGGAACTCGTCGACTTGTGGGACCCCGTGGTCGGCACGATCCCCGGCGGCACCAACCACGGCGGAGCCTCATGACATCCCTCAACCGGAAGGCACGGCAGTCATGGCCTCGATGACCGTCCTCGCCACCACAGCCGTCCCCGACCACCTTCGCGGCGCCCTCACCCGATGGCTGCTTGAGGTCACCCCCGAGCTCTACGTAGGCACCGTCTCCGCCCGCGTACGCGACGAACTCTGGGCCTCCGCCACCGCCTGCGTCGGCAGCGGCACCGCCGTCCTCGCCTACCCCAGCGATAATGAACAGGGATTCGAACTCCGCACAGTCGGACAACAGCGCCGCAACCCACTCGACTTCGACGGCCTCACCCTCATCGCGTTCCAGGGAGAAGTCAAAAAACAGCAAACTCGCCCTGATGTTGCAGGTCAGTAAGT # Right flank : GTCGGTAAGCACCTGAAGGAGAACACGAAGCGGCCGCGGTC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCTCCGCGCGAGCGGAGGTGTGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCTCCGCGCGAGCGGAGGTGAGCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.10,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [30-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 12122-11670 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABTTR010000001.1 Streptomyces sp. Vc74B-19 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 12121 29 89.7 32 T.....................C.....C TGGGGGAGGTCCTAGGCCAGGTGGGCGTCGAC 12060 29 100.0 32 ............................. CTGACGCCCCAGCAGATTTTGCCGGTGCCGAG 11999 29 89.7 32 .G..........A............A... GACCCGGAATTCGTTGCTGTGGATTACTCCAG 11938 29 100.0 32 ............................. GCGCGTGAGGACTTCATGCGCGTGGCCCTGAC 11877 29 93.1 32 .........................A.T. TCGCCCCAGATGTCTCCGTTCGCCTGCGTGGC 11816 29 89.7 32 .C..........T............A... ACCTCACCGGCCGAGCCGGCGAGGGTGCCCAG 11755 29 89.7 27 A...................C....A... TCTCAGACGCAGTGGGTCGCATGGGTC T [11750] 11698 29 75.9 0 AC.........A.....A......C..GT | ========== ====== ====== ====== ============================= ================================ ================== 8 29 91.0 31 GTCCTCTCCGCGCGAGCGGAGGTGAGCCG # Left flank : CGCCGCCCAGCAAACTGCCGAGCAGGGCCGCTGACAGGGCAGTCCCCGTTGCCGCCGAGACGCGTCGACGCCATCGACGACGATGCTGCCCAACCTTCATGCGCGCTATCCCCACTACTTACAGACACGGATAAGTCGCGCAAGGTTAGGGAGTAGTTGGGATGTTGATCAAGGCCAGAAAATCCACCCATGCAGGTGCCGACCGCAACGAACACTGACGAGTGTGAGCCTGTGTGATTACTCACTCAACATCCATACAACCATTACCGTTCTTCCGCACAGCAAACACGTTGCCTGCATCTAGCCTGGACGAGGTCACTATGCGCCTGCGTAAGAGAAGGCTGGGCGTACCCGGCTAGCCCCATGTCGTGCGGGCGCGGATCTGCGAGCCCATCACGCCTCAACCGGCCGCCGCGATGCACCTGCGAAGGAATAACTGGTCGCCGGCCTACCACCCGACGAGGAGTCACCTTCGCAGGCTCGTGCCGTCAGCTTGTGAC # Right flank : TCGAATGTGGCGTTCATCCTGGTCAGAGTGCGTTGTCAGAGCCGCCTGATAGCAGTACCGCTATGACGGAGCATCAGAAGATCACCGCGCCTTGTGCGTGTCCTGACCCGAGGCTTTGGGGGAAGGAGCATGGTCTTGAGCGCGCATACCCGGTGATGTGCCATCTACTGGACGTTGCTGCGGTTTTCGGCGTCTTGTGGGACGTGATGCTGTCCGTTGCGACTAGGGAGCGGTTCGCCGAGCAGCTCGCTCTGGACGAGAAAGCGTGCAGAGCGGTGCTGTCGTTCTGGGCGGGTCTTCATGACCTGGGGAAGATCACGCCGGTATTCCAAGCACAGGTGCCGTCGCTGTTCGACCAGGTGCGCAACGAAGCGGCGTATCTCTTTGCGCCGGGAGCCGAACGGCACCGGGGTTTCCGTCACGAGATGGCGACGCACTGGTCGCTTGCCTCGCTGCTGGCGGAAGAGGGTTATCCGACACGGCGGGGGTCAACTGGTGTG # Questionable array : NO Score: 5.26 # Score Detail : 1:0, 2:3, 3:0, 4:0.55, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCTCCGCGCGAGCGGAGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCTCCGCGCGAGCGGAGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.40,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //