Array 1 115634-115186 **** Predicted by CRISPRDetect 2.4 *** >NZ_VMHL01000002.1 Gilliamella apicola strain W8131 NODE_2_length_600485_cov_210.971701, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 115633 28 100.0 32 ............................ CTGACAGCGCAGGCCACGGGCTGAATCTTCAA 115573 28 100.0 32 ............................ ATTGGGTGTCAGGGACACGAGTCCCCCCGACG 115513 28 100.0 32 ............................ TTCAAGCGGATCTTTCAGTTCGGCTTTATCAC 115453 28 100.0 32 ............................ GATCGCATTTAGAAAATCGCCGTCATCTTTAT 115393 28 100.0 32 ............................ ACAGGAACTTTTGATCTCATCTTTGGCCAAAT 115333 28 100.0 32 ............................ TGTACAAGCCCCTTAACGGGAACCTCAACGGA 115273 28 100.0 32 ............................ GTTTTGCCGCAGAACAAGATAAGGGCCTTATA 115213 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 8 28 100.0 32 GATTACTGCCGTGTAGGTAGTTTAGAAA # Left flank : TCCATACCTTGAATTTTCCAAGTTAACTTAATGCCTCGGTTACTCCGCTCAGGGTCTTCGGGGGGATCTTCAATCTCACATTTTTGTGATGAGCTATGATCATGCCCATCACAGCATGCGGTGTGACTAGCTTCCTGAGAATGGTGAGAATCATGTGAATGATTATGAGCAATATTATGACAATCGCCATGACAATGATCTTGATTATCGTGGTGAGATTGTTCGGATTTGTTATTATATAACATAACGTTACCTCTTTTTGTGGATGATTTTGATTGTACGCTCAAAAAAACAAAAAGAAATCTTTTTTAAACAAATTTTCGAAAAAAGTTGAGGAAGTTTTTTTCAGCCAACATCATGTTATTGCCAACCCTTTTTTTTAATTAAAAATAAAATGATTAAAAATCAATAAAATATAAAGTTGTCAAAAAAAAGGGTTTTTGTAAGTAAAAATCCACTTTTACTTCTTGCAAACTATGTTTATATTATATCGTGTTCTA # Right flank : AAGAACAATGAAATCAGTGCATTTTTTAAAGATGCGAGCAAATATTTTGTGACAAATTAATTGAATAATATCATCAATTAATTAGCATTAATTTTAAATATAGAATAATGTAGATTTTAGATTAATCAAGTTTAATAGAATATTACGTGGTTATTTTTCCAAATTTATAAAGTCTTGAAAATAAACATCACCAAATAATTTACTATATAGCGGTTATTTAAGTTGTCGACAAGTTGAAAAAACTCCAAATTAGCCGACGAGCGCCTATATTCCCACTAATTTTAAGGGTATAATTACATCATTTAATTTAATGGTTAGTCTGCTTTTATGAGTTCTTCATTCATTCGAAAATCTGGCGTTGTTTTTGGTGCTTTTTTAGTGACGACGTTTATTATTGGAGTAGCGGGTGCCTTACAATCGCCTACCTTAAGTCGCTTCTTATCGTTTGAAGTTGGAGCTGATCCTCGTTTAGTCGGTGCGTTTTATTCGGTTAATGCACT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTACTGCCGTGTAGGTAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGTAGTTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.00,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 361808-362255 **** Predicted by CRISPRDetect 2.4 *** >NZ_VMHL01000003.1 Gilliamella apicola strain W8131 NODE_3_length_477552_cov_213.948526, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 361808 28 100.0 32 ............................ CTGCGCTTTTTCTTGAACGACTTTCACAATAT 361868 28 100.0 32 ............................ ATCACGAGTAAAGAAATTTTCTGGCGTTATCT 361928 28 100.0 32 ............................ GTCCCGCCTCTTGAAAATCTCATGTTGCGCCA 361988 28 100.0 32 ............................ TATATGAATAAACCTTTTACCCCCCGCCCTTA 362048 28 100.0 32 ............................ ATATTATTTATGCTTCTTATACAGAGCTTTTC 362108 28 100.0 32 ............................ AAGGTAACAATTATGAATAATACATTTATAGG 362168 28 100.0 32 ............................ TTAACTTAATAAGCTTAATTATCTCCATAGTA 362228 28 78.6 0 .....................AA.ATCT | ========== ====== ====== ====== ============================ ================================ ================== 8 28 97.3 32 GTTTAACGCCGTATAGGTGGTTTAGAAA # Left flank : ACTCTGGCTGGATTTAATTTAACTAAAGCAACCGCTCATACCAAAGTACTGAATTTTACCTCTAATTTAGCAGGATTAATCTTCTTTATTGCTGGAGGTGAAGTGGTATGGTCAATTGGTTTAGTTATGTTAGTTGGCCAATTTATCGGTGCAAGATTAGGTGCGAAAATGGTTATCGCTAAAGGCCGAAAATTAATAAGACCAATGTTAATTACCGTCTCAACCATTATGAGTGTTAAACTAATCTATGAAAACTTCTTTTAAAGAATAAAAAAAACAGTTTTAATTAACTATAAAAAACCCGTTCCTCAAAAATTTTGAGGAACGGGTTTTTTGCATTTCCAAAAGTCTATATTTTAAATCAATAAAAAACCTTTTTTTTACTTAAAAATTAATTTAATAAAAATCAAATAGTTGAAATTAACCGCAGAAAAAGGGTTTTTACGTCAAAATTGTTATTTACCTTTATCTGAACAATGATTATATTATATCGGTTTCTA # Right flank : TTTTATTAAATCTCTTAGATAATTATTTAAAAGACTCGTTTTATACATAAAACAATGTTAATTTATCACCATTATAAATTGAATTTATTTTCTAAATATCATGGATTTGATTCATTCGTCTGATCTTAAAACCATTTTACATTCCAAGCGTGCAAATATCTATTATTTGGAGCATTGTCGAGTTTTAGTCAATGGTGGTCGAGTTGAATATGTGACCGATCAAGGGCAGCAGTCATTATATTGGAATATTCCTATAGCTAATACTAGCTGTATTTTACTTGGTACAGGTACTTCATTAACTCAAGCTGCGGTGCGTGAACTTTCTCGAGCAGGAGTTATGATTGGATTTTGTGGAGGAGGGGGAACGCCTCTATTTTCCTCGACAGAATCGGAATTTGCCTGCCAATTCTTTTCACCGCAAAGTGAATATCGTGCAACCGAATATCTGCAAAGTTGGTGTCAATTCTGGTTTGACGATAATCTCCGCCTACAAGCTGCGA # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAACGCCGTATAGGTGGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.40,-0.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-83.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 371657-371924 **** Predicted by CRISPRDetect 2.4 *** >NZ_VMHL01000003.1 Gilliamella apicola strain W8131 NODE_3_length_477552_cov_213.948526, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 371657 28 100.0 32 ............................ AAGCAGTTACGCATGTAACCAAGGCTAAAAAG 371717 28 96.4 32 T........................... ACTGGTCGCTATCAATCGGGGTATACATTATT 371777 28 100.0 32 ............................ AACACTATCTATAAATTCATTCATTACATCGC 371837 28 100.0 32 ............................ TTTAACACCACAAGAATGGGTTGAATCATTAA 371897 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 5 28 99.3 32 CTTCAAGGCTGCATAAGCCGTTTAGAAA # Left flank : CCGAAAAACGTTTAACCGCACAAGGTAAATGGTCAGCCGAGGTAAAAAACAAAATGGTTGAAAAATGGGGCAGCCTTCATTTGAACTATCCACACCTTCATTTTGCTAGCAAAAGCACTGGGCAACACTTTATTATGTGGCTGAAACAACAAAAATGTGCAACGGCTGTTCAAGGTACATTTAATAGTTACGGACTCAGCAAAACTGCTACTGTTCCTGATTTTTAACTAAATAATAAGGGCATTATTATAATGCCCTTAACTGCCAATAATTAATAATATTAACGGCATAAATTTTGAGGAGGGTACTTTTTAAAGCTAAAAAATTTGAGGAAAGGGGTTTTTGGAACCTAAATACCATGCAGTGTTAACCCTTTTTTTTAACTAAAAATAAAATTTTTAAAAATCAATTAATTGAAAAGCCACCCAAAAAAAGGGTTTTTGCAAAGTAAAATAGACTTTGCCTTTTGCACAACAATGTTTATAGTATTTGAGTTTCTA # Right flank : ACAACTTATCAAACGCCCAAAGTTCAAGGCTGTAAAAGTGGAAAATTTTGAGGAGCGGGGTTTTTAAGACTAAAATCCATCCGATAAATCACTAAAATTAGTTATAACATCAGCTAGGGTCAATAATAAAAGTTTATTTTTATCAATTAGTTTAGTGCTTCTCATTTAGCGACATCAGCAATGTGCTGACAACTGAGTGAGATTAGCATGACAAACAGGGATGTTTGACAAGGCTGTTGTTTGTCAGAAACAAATCACAGCCGGTGCGTTAAGAGCGAACGAAGGCGGAAGGCAGTCACATCGTGACCACTTGCGTGGTCGCCGCGGGAGTTGGTAAAGAGGGTTCGCGTAAACCCTCTTTGCTCGGACGTAATTGTCGTATAGAACTAGCTACCAAACAACAAAACGTCCGAAACTCACCGCATAAAAAAATTTGAGGAGTGGGGTTTTTAAAGCCTAAAATCCATCCGATAAATCACTAAAACCAGCTATAACATTAG # Questionable array : NO Score: 3.02 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCAAGGCTGCATAAGCCGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA //