Array 1 40828-39813 **** Predicted by CRISPRDetect 2.4 *** >NC_003364.1 Pyrobaculum aerophilum str. IM2, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ============================================= ================== 40827 25 72.0 25 .A.A.........A.A.C..A...A CCCACAGGAACTATACACGCAAGCC G [40814] Deletion [40778] 40776 25 100.0 45 ......................... ATGACCTCGGTACAGCCGGCGTATACCGTGTCCCTTTCCGCTTGC 40706 25 100.0 38 ......................... TTAACTTGCCACCATTTTTCCATTGTTCTAGCAGTGGT 40643 25 100.0 44 ......................... CCAGAAAGGCGCTGCGTAGAAACAGCTAAGAAGCCAATTCTCCA 40574 25 100.0 44 ......................... AGCATCACAGACGTGTACGTCATGTGCACCCCACAACCCTCCTG 40505 25 100.0 44 ......................... GGCTTCAAAACTAACCAAAGCATCAAATGACGGTCTGAGACCTT 40436 25 100.0 40 ......................... CAAGTTCCAATAGTCTTTCCTTATCGATTTTTCCAAATAT 40371 25 100.0 43 ......................... ACGGCTATCCACTCCCACACCCTCGGTGTTGGAAATGCCGTGT 40303 25 100.0 40 ......................... TGACAACACCGCCACCGTACTGTCCAGCGTTGCCAACGCC 40238 25 100.0 43 ......................... TCTCTCCATGTGTGTGCACAAGTCGTAATTAATATTTAATTAC 40170 25 100.0 40 ......................... TTAAACCATACAGACTATTTGTTCAGTAATTGGGCCGACC 40105 25 100.0 40 ......................... AGCAGTTCTACTGCTTGCTCCTTGTCAAACCACTTACCCC 40040 25 100.0 45 ......................... CCATTTTCACTATATTCTACACGTCGCCTACCGCCATACGCATGT 39970 25 100.0 41 ......................... TTTCTCTTATGGCTGAAAGTATCATCAATTTTATTAATGAG 39904 25 96.0 43 ...A..................... GCCTCATTAACGACTGGGCCGTATATCCGCTGCAGTTCTTCCA 39836 24 96.0 0 ...............-......... | ========== ====== ====== ====== ========================= ============================================= ================== 16 25 97.8 41 CCAGAAATCAAAAGATAGTTGAAAC # Left flank : ACGTCCTCTACCCATCGCCGCAGAGAATGGCCTACTCCCTGGCCAAGGCTTATAAAGAGCTCTTCGGCGTAGATATCAAGCCCATTGCAGACAGGGCTCCCACGGCGCTTGAAATAGTGGGGATGAGGACTAAGGCCGTCAGAGTGAACATCGGGGACTCCAGGCTGGTCCCCGCCTTTCTGGGCAGGGCCCAACTAGCCGTGTTTGGCAACGTCGACGCTTGGCTCTCCCTTTTAAAACTAGGCGAGAGCGTCGGCGTGGGCATTTCGAGGGCTATTGGATTCGGCAAGTACAAAATAGAAGAAGTAGTTCTCCACGCCTAATTCCCTCCAATATTCACTCCCCCCCCCCCTTCCTCTTCGCCGCGGCGAAGAACGGCGTTGGGTGTTTACGACTATTTCCGCTTGTCATTCTCTTCTAAGCGAAGAACGGCGCATTCTTCCCCCGGTCGGCGGTATATATGAATGTAAAGCGAGTGTGAAAAGGAGCTAGCCGTACAG # Right flank : AATCCCTTTTACACGTCTCCAGCTCGACCTTGGCGTTTGCCAACTCCTCAGCCAGTTCTACAATTCTCTCCCTGCCGCGGAGAATAGTGGCTAGTTTTTCGTACATAATTTTGGCGGCTTCAAACGGCTCTAATTGTGCCATTTTTTTCACTTCCTCCTCGGGCATGTTTTTAAGCAGTAGGGGCATTGAGAGGTGGGCCCACTCCGTAATGAACTGCCACCACCACTCTATTGTCCTGCCCGTTAATTCTACGTATTTGCTCATCCACTCTAACGCCGCTCTTTCGGGCGGAGTGAGCTCCCTCCTCGCCACGTTCCTCCCATACTGTTACTAGCTGGAGGTATTTGTCGGCGGCGGACTGGAATTTTATAGTGTCCACCGCCGTAGTGCACTTCTCGTAAAAATCAGTAAGAGTGTACGCGCTGTTTTCAACTGCGCACTTCAAGCCCGCCTCAATGGCCTCTATTTCTTCTTTCGACAAGCCGACTGAAACGACCAG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAGAAATCAAAAGATAGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.00%AT] # Reference repeat match prediction: R [matched GTGGAAATCAAAAGATAGTAGAAAC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [2-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : I-A [Matched known repeat from this family], // Array 2 45452-46687 **** Predicted by CRISPRDetect 2.4 *** >NC_003364.1 Pyrobaculum aerophilum str. IM2, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ============================================== ================== 45452 25 72.0 25 .A.A.........A.A.C..A...A CCCACAGGAACTATACACGCAAGCC G [45464] Deletion [45502] 45503 25 100.0 43 ......................... GGTGAATATACAGACAATATATCGAACGATGGCCGCAATCCAA 45571 25 100.0 43 ......................... TGTGAATACGCTCAGCTTGGCGTGCATCAGTCTCTTCAGAGAT 45639 25 100.0 43 ......................... CTGAAAAAGTTCCTGAACGCCGGGTTTTTCGTCGGGACCTTCC 45707 25 100.0 43 ......................... AACACTTTCAACCTAACAGTTATCCACTCCGCGATGTCGCTTC 45775 25 100.0 42 ......................... ATCGTGAACTTGGCCCTAAGCTTAGAGAATACATCACTCCAA 45842 25 100.0 42 ......................... TATATCCATATCAGCCTCCGGCCCACCGTTAGCTTGATGTCG 45909 25 100.0 44 ......................... TTATCGAAATACATCAAACCGTCGTGCACGTGGGCCGCACACCG 45978 25 100.0 42 ......................... ATATACGTTTCACCCGCGCCACGCGTCTGTACTAATGCCGCG 46045 25 100.0 40 ......................... GTGCGGCTTAAACGAATACGGAAAGACAAAGCTATTCTCG 46110 25 100.0 44 ......................... AATGTATCTGTACAGACCCCGCATGCATAAAGTATCAAGTACAA 46179 25 100.0 46 ......................... ATAGTCAGAAGAATAATACAACTATGACATTACTGGTAATGCCAAC 46250 25 100.0 45 ......................... GAGGCGGAAGGTTGCGGCATATGGAATAATTGAATGTAATACCCG 46320 25 100.0 43 ......................... TTCCCGAAGTTGCCTGAAAGCGATGTGATCCGCGGCGCGTCTA 46388 25 100.0 44 ......................... CCATGGCCCGCAAAAAGAATATTTACGCTGGGCCTTCCTCTTGC 46457 25 100.0 44 ......................... TGTCCACTGTCTGTTTTGCAAATCTTCTACTATATCCTGGTAAG 46526 25 100.0 42 ......................... ATTGTCGCGCTGAAGGCGCCACAGCGCGGCACCGATGTTCAA 46593 25 100.0 45 ......................... ACTACATGTAAATGACTGCGTGTTCATAGTGGCAACCTGTAGCGA 46663 25 100.0 0 ......................... | ========== ====== ====== ====== ========================= ============================================== ================== 19 25 98.5 42 CCAGAAATCAAAAGATAGTTGAAAC # Left flank : GGCTCCCCCCTCAATTAAACTCCTGAGCTCCGCCAGAGATCTTTTAAACACCTCGTGTATATACGCGCCGAATTTCATACCCCCGTTGGGCTCCGCCCTCACCCCCAAGACTCTCTTGAGGTATAAATCCCTCCGGGACTCGCACCCGCCGCCTACAATGTCAGAAACAGACAGCCTCACGCCCAGCGGAGGCGGTTGCACAGGCGGCTCTCCCCACCTCCACCCCCGTAGCTCTTCCCCTACTTCAACCCTCAACCCCCTGACCATTCTAAACTCCCTGAACATATCCCCCCAATCTCTATAACTTTTTAAACATTAGTTTATATGAATGTAAAGCACGACAAACATATAAACTTCTGTCGCCGCGGCGAAGAACGGCGTTGGGTGTTTACGACTATTTCCGCTTGTCATTCTCTTCTAAGCGAAGAACGGCGCATTCTTCCCCCGGTCGGCGGTATATATGAATGTAAAGCGAGTGTGAAAAGGAGCTAGCCGTACAG # Right flank : CGTTTAGGTCGTCTTGCCAGACATCGAGACGCCGTTCGCCCCCGCCGCCGCGTTTTACGCCCTCTTCGCCGCGTCGCTCTTGACGGCCGCTGAGTGGTGGTACCTCTTCTACCTCCCCGCGGCTTTCGGCGCCTTTTACTACGCGTTGAAAACGACGAGGAAGTGGTATTGCGGAGAGTGTCTGAAGGCGTATGGGCACGGGGCGCCTTACACATAACTCAACTCCTACTGGTCTAAGGCACTTGGCGATAATGTCCGCCGCCATGAGGCGCTGGAGGAGGAAATGGGCCGCCTCAAGGGGATAACTGACGCTGAGCAGAGGCTGAGCTGTTTGAGGGCCTATGTCTATAGGGAGGTGAGCCGCGTCTGGAACGAGAGGTGCGGCTATACTGTGTACGAGCCCATTTGTCTTTATCTCGAGGGGGTGGTGGACTGGCGCGGCTACAAGGCCCTGAGGTCGTTTATGCTGGGCGAGAGCGGCTCTGAGGAGTGCGAGAGGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAGAAATCAAAAGATAGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.00%AT] # Reference repeat match prediction: F [matched GTGGAAATCAAAAGATAGTAGAAAC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.41 Confidence: HIGH] # Array family : I-A [Matched known repeat from this family], // Array 3 95531-101005 **** Predicted by CRISPRDetect 2.4 *** >NC_003364.1 Pyrobaculum aerophilum str. IM2, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ===================================================== ================== 95531 24 100.0 40 ........................ TATTCAGAGTACTCTAGGCCGGTATACAGAGGGCCTAAAA 95595 24 100.0 44 ........................ AACACGTCAGCCAGCCCTCCCCATGTGGCCCTGGCTGTACACAG 95663 24 100.0 44 ........................ AAAATTTGTAAAGTTAGAGATAGCGAGCCGCGAATTGAGAGCGG 95731 24 100.0 49 ........................ TCTTCGGACAATGACGCGCTTAGAATGGGCGATTTATTCAACACGTACA 95804 24 100.0 47 ........................ CAATTACTCTTAATTCAGAGTCTCCCTCACAGACGGCAAAATACTCA 95875 24 100.0 45 ........................ ATGTTAATTGAAGGGCCTGAGAACGCTGTTCAGTTCATTCTCAAT 95944 24 100.0 42 ........................ CGTCTTTCTTCTTCGACACCTTGATGTTCAACGCCTCTACAG 96010 24 100.0 44 ........................ GTTCTAAATATACCGACGGCCGCGACATTTACTAATTCTCTGAA 96078 24 100.0 46 ........................ TTATATACTTGGATCTGTACGTCCCCTTCCGTATATACACCCTGCC 96148 24 100.0 41 ........................ TTGACAATTCAGCCCAAAGTGTAATCCGTTGATATGGTCGG 96213 24 100.0 47 ........................ TCGGTAAATTAGTCAGTGAGAGCTTGTTAGGTATACTCCCCCCTTCC 96284 24 100.0 41 ........................ ATACTAATTGTGGCGGGGTTCAACCGTCAGCTGTTCCAGGT 96349 24 100.0 38 ........................ GTCCGCAGTCAACAGCCAAAAAGAGGGGGAAATAAACG 96411 24 100.0 40 ........................ CTTTATCAACGTAGACCCTTTTGTATATCAAGCTCTTTCC 96475 24 100.0 48 ........................ CAGGTAGAGGTGCGGTTCAACAACGTTGTTGGCCACGTGGACTTTTTT 96547 24 100.0 35 ........................ TGGTTAATTCCAAGCTGAGGCAGGTCTGTGGACCC Deletion [96606] 96606 24 100.0 44 ........................ CCCGCGGGCCCCGGCCGCGCCAGCGGCCACCTTGTTTTTGTTGT 96674 24 100.0 40 ........................ GCGCCGTCCATGCGAGCACGGGGAAGACTGCCGAGGGGTC 96738 24 100.0 43 ........................ ATTATCTTGACTAGCATCGCCACGGCGGCGAGCCCTGCGAGCT 96805 24 100.0 40 ........................ ATCCTAGGCATTGGGATGTACACTGCGATTTCCCCCTGCG 96869 24 100.0 44 ........................ AGAGTCCCTCCAGCTCCTCGAGGGCGGCGCACACTACGCACATG 96937 24 100.0 45 ........................ TGCTGTCTGGAGTTTCGGTTGTGCTGGCAGCTGTCTTTGGCGCCT 97006 24 100.0 45 ........................ GCTGTATGGAGAGCCAATGCGCATGCGGCGTAAGACTGTATATAC 97075 24 100.0 42 ........................ GCAAAAGGCCTGCGGAATAGCCAGCCATCCCCCCGCCTGGCG 97141 24 100.0 44 ........................ CCTCAATTCGTCTACCATGGTCTCAGGGTCGATAATAAACTTCT 97209 24 100.0 43 ........................ AGCTTTTTAAGGGCCTCATTTTTCTGGGCCTCAGTAATAAAGC 97276 24 100.0 41 ........................ TATGCGTTGACCCGGGGCCCTACACAGCTCTCCTACTTACC 97341 24 100.0 45 ........................ ATGCGTATCATATACGCCGCACCCGCACAAACTAATAACCGCATT 97410 24 100.0 48 ........................ ATACGGTGTACTGCAACGGCCGCGATTTGACTGAATGTACAAAAACCG 97482 24 100.0 44 ........................ TAGGTACGTATTTGAGGCGGTCTGCCCTCTGTGCGTGTCCAGTG 97550 24 100.0 42 ........................ GGGAGGCTCAGCAAACAGGACACACAGCTTCCTGGGTACCCG 97616 24 100.0 53 ........................ GCCACCTGCTTAGCCGCCTCCTTCGCCCTCTCAGCCCGGCTGGCCTCCGACGG 97693 24 100.0 47 ........................ CGGTGGCGGTGTACCAAATGTTCTACCTAGCCGGCGTCCAGCCGCCG 97764 24 100.0 45 ........................ ATTTTTCAGTTCTCCCGCCGAAGTGCTTGAGATACTCGCAACCGT 97833 24 100.0 45 ........................ CTAGACGGAACTCTCACCAGCTCCTCCTCGGCGCGCTTGCGCGCC 97902 24 100.0 43 ........................ CTATTCCAGTGGCGAACTCGGCCGATATCCTAAGCCCTGCGAG 97969 24 100.0 49 ........................ CAGTTGGGACATGTTTGAGAAGGAGCTGGCCAGGGCTAGGAGTGCTGAG 98042 24 100.0 45 ........................ GTACGGATACAGCGCCACTGCTTGCAGCGGCGCGTCTACGCCGTT 98111 24 100.0 43 ........................ TCGGCACTGGGATCGTCCTGGCCATAGTCGGCATTTTCATGGG 98178 24 100.0 46 ........................ CGCGTTCTCGACACTGTGATGGATCTGATCCGCATGGATGCAGTGG 98248 24 100.0 41 ........................ ACTCGTTGCCCAGAGAGCGCCTCTGGAACCTAGCCAGCACC 98313 24 100.0 43 ........................ CACAATTGCGAAAAACGCGGCCCATTTGTATATAGCTCTCCCC 98380 24 100.0 44 ........................ CTAATTTCAGTGATAAGTCCATACGGCCCAATTTGACGACATAA 98448 24 100.0 42 ........................ GCGAGGAGATTGCGCAGGAAGAGAACTCCTGCAAGCGCCGTT 98514 24 100.0 41 ........................ AACTATATAACAAAACTAGAGCCGCTGTTGAGGAAGGCTAA 98579 24 100.0 48 ........................ CTTGAACTCAACGTCTCCAAGCATTTGTTTATACACGAGCACGCGGGG 98651 24 100.0 45 ........................ CGACGCCCGTATCGTCTACTTTCACGGCGGGCTTCTTGACAACGG 98720 24 100.0 43 ........................ CACTATTTTGAAGAGTGGCATGTCCATTTTGGCGTCTCTCTTT 98787 24 100.0 43 ........................ GTGCCCCCTCGTGGCCCGGTACCGGGCCCTGACGGCCGCGAGA 98854 24 100.0 43 ........................ CGCTGTCCCAGTTGCGGCGGGTTGGTGTTGGCGGTCGGCGGAA 98921 24 100.0 42 ........................ AGCCGCGGCGCCTCTTCACGAGCCCGATGGCGGCGAGCTGCC 98987 24 100.0 49 ........................ GAAAAACAAACCTTTTTCAAGAAACTACACCAGGCCCTATAGGGGCCAG 99060 24 100.0 42 ........................ CTGAGTTGACTGATAAGTTCATACGGCCCAATATGACGACAC 99126 24 100.0 43 ........................ CCTCAAAGCCGCTACAATAATCATCGAGGAGTATTCAAAAGAA 99193 24 100.0 46 ........................ TTGAGACTGTGGAGTTCGACATGGTGCGAACAGTGGCTGGTCTCGA 99263 24 100.0 42 ........................ TTTACCTATGTTGAAACTGATATGCGACTAGTGGACTGTATG 99329 24 100.0 40 ........................ TGTCCAATGAGCACATCTTCAATAGAGGCACCTCTATGCG 99393 24 100.0 44 ........................ AATACGCCTTCCTCGACTCGTGGTCGGCGTAGCACATAATCGTC 99461 24 100.0 48 ........................ AAGATTTTAGTCATCTCCTCCGCCACCAGGAACACTATCCTTGCGGGG 99533 24 100.0 45 ........................ CGGGAGATTGGGCAGGTTCGCCGCCTATGGGGACAATATCATCTT 99602 24 100.0 47 ........................ TATCTAAATCAGCTTGTGCGTGGCTTGATAAGCAAAAACATGCTGGG 99673 24 100.0 45 ........................ GTGACGTCTAGATTGGGCAGGAGTGTTTTAGCCCTCTCCCCCGCC 99742 24 100.0 46 ........................ TGTACTGCTGAGTGGCGTTTATCTTGACGGCGATGTAGGTCTCGGT 99812 24 100.0 46 ........................ AAGATCCTCAAGCCACACCACTCTGCCGCAGAGCGGCGTCCCTGGT 99882 24 100.0 43 ........................ TTCTGCCTTTCGGGCACCCTTCTCATTTGGCCCCGCCCGAAGC 99949 24 100.0 45 ........................ TCTGGCGAGAACTGTGTAACGACTACTACCACACAGCCACAGGGA 100018 24 100.0 43 ........................ GAGGTATACTCGGCGGCGTATACATATATAGCCCTAGAGCGCT 100085 24 100.0 44 ........................ ACCATCGTGGAGTGCCAAGTTCGCACCCATCGAATTTACACTAG 100153 24 100.0 45 ........................ AAGCACGATTTGACAAAACAAGGTAAAGGGACTTGGGTTCGCCGT 100222 24 100.0 42 ........................ GTCCCTATACCCTGCTCCGTCCCAGTCTGTAGATGGGTCCTT 100288 24 100.0 47 ........................ CTGGCGAGATTGATGTTAGAGCACGCGGACGCCGTTATTGAAATACT 100359 24 100.0 45 ........................ GCGTTTTCATCAACAACAACGCCCCCGTACCACTCAAGAATAATA 100428 24 100.0 44 ........................ GTTCAATACGTTTGAAGTTGTCTGCAATTTCCTGAACGGCCCTA 100496 24 100.0 49 ........................ TCTCTGTCTCGTACCTTGTAAATGTATGGCGTCTTCACAACCTGAATCT 100569 24 100.0 41 ........................ GTAAAAACTATATTAACATGCCCAAACGTTATGACCGCCGT 100634 24 100.0 42 ........................ TGGACATTTTCGCCTCTGCTTCGGGCCCATATGATTGGACGA 100700 24 100.0 46 ........................ GTGGCGTTGATCTCCGCCCCGAAGCCCATGCGCGCCCCCAGCTCGG 100770 24 100.0 46 ........................ ACACTGCAGTACCGTGCTTACATGGAATATAGAAGTAGCGCTTACC 100840 24 100.0 52 ........................ TCCGGCACCCTCCCAGTGTGCCTCTTCATAAGGGCGATTAGGTAGATGGCCC 100916 24 100.0 42 ........................ GATCTTCGCGCTGAACAGGCGCAACATGTTCTCGCTGAGTTC 100982 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ===================================================== ================== 81 24 100.0 44 GAATCTCAAAAAGAGGATTGAAAG # Left flank : CGGCGAATAGGGGGGAAACGGCAAAGGGCTTGGGCTTGGCGTCGTGAAGCCATCCCCCCAGTCTAGACACCACAAGAGACTCCACCAGAGTGCCGGAAAACCCAGTCAACACCACTCCCCCGGCCAGCCTGCCCAGAACTCTAACTCTCCACACAGCCCGCACAACGCCCCCATATTAAACTACCCCTCTATATACTCTATATATTTCTTGGCGTTTAAAAATCGTCGTACACAACTCTCTTTACAAATTCCCATATTTCAACTGTCTTTCCGAGTTAAAAATTGTAAAGAGGGTATCCAATTTATAAATCGTCGTACAACAACTCGGCGCACCCCGGCGCCGAGAGGCAAAAAACGGCATTCAACTACCGGGAATAGAGTCAATCTCCAGAATAACAGCCACAAACCCCTAAAAACGACACAAGAAAAAACCGCCTCCAAAGACAAAACAAAAGGAGAAAAACTTAAAAACCCCCAAAAACACAAATCCAGAGATCCCA # Right flank : GTTAGAAATAAGCTACGGGAAACAAAGCTCAATGAGTTTGTCTAGCCGATTTTGGATTGTTGGCTTAGATTTTTTCTACGTGGGGAGATGTGAAGCCGCAGTATTTACGGTACCAGCAACTGGGGCATTTGGCCGGGTGGTAGGCGGGTGTGGGGGTCCAGCCGTTTTGTATTTTCCTTATCTGCTGGGCCGTATGTTTTACTAGCTCTACGAGGTCGCGGGTCAGGGCTATGTATTTTACCTCTCCTGTCTCCGTGTAGTATATATAGGCCGAGGCGACGGCTTTGCCGTAGTGGTGTTGGGCGGCGACTGCGTAGGCCGCGGCTTGTGCCTTGTGGTGGACGGGAATTTTCCTGGGGGGCTTGGCCAGTTTTACCTCTAGGGGGGCGGGCCTTCCTCTCAGCCACAGCACTGCGTCTACTACTCCGCACAAGCCTCCTCCCTCTAGGCGGGGGCTGTGTTCTATTTTCTCGGCGCCTAGGGCCTTTGCCACCGCCTCT # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAATCTCAAAAAGAGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GAATCTCAAAAAGAGGATTGAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0 Confidence: HIGH] # Array family : I-A [Matched known repeat from this family], // Array 4 592221-591745 **** Predicted by CRISPRDetect 2.4 *** >NC_003364.1 Pyrobaculum aerophilum str. IM2, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ========================================== ================== 592220 25 100.0 36 ......................... ATTGTTTTACGCTATCCCAATAGAATGCCTCTGCTG 592159 25 100.0 37 ......................... TTTCTCTTTACAAAAATATAACTTAAGAAGAGCCATA 592097 25 100.0 42 ......................... TGTTGCTAAGCTTCTTCCAGATATTCTCTGTAATAGCCCTAT 592030 25 100.0 37 ......................... TTTAATTCTTCTAACTCTTCTTCCAGCCAAGCGCTAA 591968 25 100.0 42 ......................... TAACATATCCTCGGTATTTCAACTATTTTTGCTTCTATAACC 591901 25 100.0 42 ......................... AATGTATATGTTGTGGAGGCCGGGGCCGGGGGCAGTTTTACA 591834 25 100.0 40 ......................... CGCAAAGTGTTGTGGTAATCTGCCACTCCTCTCCTCCCTC 591769 25 100.0 0 ......................... | ========== ====== ====== ====== ========================= ========================================== ================== 8 25 100.0 40 GAAGAATCTACAAAAGAATTGAAAC # Left flank : TCACGGAACAAGGGCTTGTGAAAAGATGCCACGGCCTAAAAAGCGGCTGAACGCCGCCTTATTCACAAGACAACAGGCCCTAACGGCTTAGGATAGACACGCCGCACGCGTTCTGGCATATCTACGGCATCCAAAACCAGTCACGCATGCATCCATGCTTTACCTCAGTAAAGCTCCATTCAAGTTAAAAATAGCCTAGACACACCTCTCTGCCAAGATTTCAAACCCTTGGATAAGTTTACAGAATAAATTTCAGTTTTTACGGTCTAATTGTTTTTAATCCTTTACTTTGTAAAATTTGGGACTCGAAGCAAATACCCCTCAGCGTTGTCTCTATCTTTTTCTATTGTGTTTTTGTTAATGTTTATCTTCTTATCCAGTGTTGTGGTAAGCGTGCTGTGGCGCCCCGCCGAAATGCCCCAGCCGCCGAGGAGGAAAACAGACGTGAGACAAAAAATTTATAAAGTGGGAAAAACTAACATCCCGAATAAAAACCCACA # Right flank : AACATGATAACGGCGAATAAGCTGGGGGTTTAAGCTGGCGTTGAGTAATACGCGGGAGTTGATATAAAAACTGACTGCGCTATTCGGAGTCCGCCAAATGTAAATCTGTGGGTGGTGGTTAGAAGCGGGATCGACCTGGCGGGGCGGGGAGGCCTATAGGCCGGCTTTAAAGGCGCCAGGGGTTTAAGCGGTTAAGGCCCTTTGAGCCGTCCCGCAGGCGCCGTGGGGATGCGGGGGAGGAGCGGGGCGCTGTAGTGTCGGGGAGCGTATATACGCGGGAAAAACACGGTCTACAAGTTCTAAAGGGTAACGCCTTGGCAGTAGCGCGCGACGTAGATGTCGAGTATGTGCGCTAAGTCGTCGTATTTTGCCAGCTTGCGGTAGAGGTTTTTTATCAAGTCGTCTGTGTCGTAACCCAGTTTTTTATACCTGCACGCTCTTATTAAAGTCGCCAATTTGTCTGCAAACGAGACAATCCTGCCCACTAGGTTTGTCTCGTA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAGAATCTACAAAAGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : NA // Array 5 1899655-1898722 **** Predicted by CRISPRDetect 2.4 *** >NC_003364.1 Pyrobaculum aerophilum str. IM2, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ==================================================================== ================== 1899654 25 100.0 46 ......................... TTGTATAATTCTATCCAAGGCCGCAGGGTGCCTGCCGGCCAGCTTG 1899583 25 100.0 39 ......................... GCTGGCTCGTGGTAACTTAAGCGGATATCAGTGAATAAG 1899519 25 100.0 43 ......................... ACTTCTGCGTCCCAAGTGACTACAATCACTTTTCCACCACTAT 1899451 25 100.0 41 ......................... AGGTATTTGTCCGTTACGACTATGAGTCTGTCGGGCCTGAT 1899385 25 100.0 41 ......................... GGCGATAGGAGTCATGTTGCTCGGCCTCCTGCCATTGATAT 1899319 25 100.0 40 ......................... AACAAAGAGCGTATCTAATAATTCTCTGTTATCTACACCA 1899254 25 100.0 41 ......................... AGTTTCCACTCTACTCATGCGAGCGCAAACAAGATAAATAT 1899188 25 100.0 41 ......................... TCATAGAGGCAAAACTGCTCGGCAGAAATTCAATAGGAGTA 1899122 25 100.0 40 ......................... TTAACTTCAGTTTACCGCGTCCCTCGATATAGAGCACTGT 1899057 25 100.0 41 ......................... CCCGCCTTTGGAGGCCCGGCGAGAATTAAGGGCCTCATAAT 1898991 25 100.0 68 ......................... ACATCTTTTGTCTCTATGCGTATCCTTAATACTTCGACATCCTTGCTCTGTACCAGAAAGTAAACATC 1898898 25 96.0 53 ..........G.............. AGTATTGGGTTTTTTGGCTTTTTGGGCATGACTCCTTTTTGCCCAGAAATCAA 1898820 25 100.0 44 ......................... GCGCCAGGGCAAGAAATGCCTAATAGTACCTGGACTCAACGACA 1898751 25 100.0 0 ......................... | ATACT [1898736] ========== ====== ====== ====== ========================= ==================================================================== ================== 14 25 99.7 45 CCAGAAATCAAAAGATAGTTGAAAC # Left flank : CTGCACTTCTCAGCCACGTATTTCGCCATTGCCAGCGCTCTCGCCACCGCATAAGCCGCCGCCCTCACGTCAACTGGCTTTGGCAACAGCCTTTTCAACCTCACCGCAATTGAAAGGGGATTTGCGAGATTGCCGAGGAAATAAGTGTCCCGCGCCCGCCAGCTGAACTTTAAATACAGCCTCCTCCCCAAAAGCCACATGTAACCCCTAACGCCCCTTATCTCAACCAGGCCTATGTAGAGGTACATGCCCCCCACATCCTCCACATTTTAAAACATTTGTTTATATGAATGTAAAGGAACGGCGAGATAGTGCGGCGAAAAACGGCGTTGGATATGCGCCGTTTCTGCCCTCTGCCGTTATCATCACGGCGAAAAATGACATACGCCGTCGGCGGACAGGGAAATATATGAATGTAAAGTGAGTGTGAAAAGGCGCTTGCCGCAAGACAAAAAACCAAAGAAAAACTTAAAAACCCAAAAGAACTTTAAACGCAAGCC # Right flank : GATATTTGTAAAGCGTGTTAAATTGTCTGCGCCTCTCGGCGCTGTGTTTTGAACTCCTGGCAGTGCGAGTGAGCATGTCGAGCGGCTGTTAAAGGCGCAGTGGGGATGGGGGGCCAAAATACAGCCCGTCGGCGCTTGATTTTGAGCGCGGCTACCGCCTTACCCACCTGGCGAAGGTCTGTATTGGGACGTAGACAAAGCGGAATTCGTCTCTCCAAGTGGGCATGATCTTCCCCTTTATGGGTATTTTCGCGCCGCAGAACTTACAGCGGTACTCGCCTCCCTTCTCCACCAGGTTTATTTCTAATATGTCAAAGCCCCTCCGCTTTATTACGACTCTGCCGCACTCGGGGCAGTAGGTGTGTTCATAGCGGTGCCCCGGCACGTTGCCCACGTACGCAAACCTCGCCCCCTCTTTTTTCGCCACTTCTACGTGTTTTTCCAGCGTTTCCACCGGCGTTGGGGGGAGGTCCATCATTTTGTAGTCTGGGTGGAAGCGC # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.22, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAGAAATCAAAAGATAGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.00%AT] # Reference repeat match prediction: R [matched GTGGAAATCAAAAGATAGTAGAAAC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : I-A [Matched known repeat from this family], //