Array 1 32956-29546 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEACQ010000291.1 Frankia sp. CN6 NODE_76_length_44939_cov_42.879809, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 32955 37 100.0 34 ..................................... GGCAGCAAGGAGTCGCGCGCCACCTGGTGGTCGC 32884 37 100.0 36 ..................................... GCCGCCGGTGAGCGGGATGACCCAGAGCGGGTGCAT 32811 37 100.0 35 ..................................... TACGAGTACCCGCGCGGCGGGCAGACCGTGACGGG 32739 37 100.0 36 ..................................... GTCGTCACATAGGCCGCGGCCGCCACCAGATCGGTG 32666 37 100.0 36 ..................................... CGCTCTACACCGCGATCGGTCTGCCACTCGTCCGCC 32593 37 100.0 33 ..................................... CACTTGAGGTACGAGTTCGCGCCCCAGTCGTAG 32523 37 100.0 36 ..................................... ACCCCAACTGGCCAGGCAAAGGGTGGAAACCTATTC 32450 37 100.0 36 ..................................... TCGACCCCGTCGCCGGAGGCGGTCATCTGGTTCAGG 32377 37 100.0 34 ..................................... AGGTGATGGACAATCGCGATCACCGGGTTGCCGC 32306 37 100.0 36 ..................................... AGCTCGCGGGCGCGCGCGAGGGCGGTGCGCAGGGCG 32233 37 100.0 34 ..................................... CGGGTCACCCTGCGGACGCTGCTGTCGGAGGCGG 32162 37 100.0 34 ..................................... TGAGCATCGAGATGGAACGGCCGGACCCGACGGG 32091 37 100.0 35 ..................................... GACTCGTGGGATGACGACGCCCTGCGCGCCCCGGA 32019 37 97.3 35 ..........................T.......... GTCTGCTACACCTCCGACCGCCGCTGGCAGGCCGA 31947 37 100.0 36 ..................................... GCCGCCGACGACGAGCTCGGCATCACTCGCGCCCCG 31874 37 100.0 35 ..................................... GCCACGGACAGCAGGTCGAAGGTCGCGTTGTGCGG 31802 37 100.0 37 ..................................... CCCCCGTCCTGCGCGGGGTCGTCTGGGATGGGCTCGC 31728 37 100.0 35 ..................................... TTCGACCTCGCCGAGTCGCGGGCGCGCACGCGCGA 31656 37 100.0 35 ..................................... ATCCAGATCGGCGAGTCGGTCAACCGGGTGGCCAA 31584 37 100.0 36 ..................................... CGGATCAGCGACATCGTCAACTACATCCGGGTTCAA 31511 37 100.0 35 ..................................... ACCGGGTCGGCTTCTTCGGCAAGGCCGTCCGGGGA 31439 37 100.0 37 ..................................... AGCGCCACTTGACGGCCGTTTAGTCGGACTACACGTG 31365 37 100.0 34 ..................................... CAGGGCTGACGCCTGAGCGCGAGCTGCGCCAGCC 31294 37 100.0 35 ..................................... GTCCTCTGCGTCCGCGACGGCCCGATGCCAACCGG 31222 37 100.0 36 ..................................... GTTCTGCCCGTCATCAAGAAGACCATTGCCGCGATG 31149 37 100.0 34 ..................................... CGCAAGGAATCGTTCATCCTGGACAACCTCACGT 31078 37 100.0 34 ..................................... CACCAGATACCGTCCGGCCTGTTCCCCGTCGCGT 31007 37 100.0 35 ..................................... GCCAGCGTGGCCGTGGATGCGGCGCGCTCCCGGAT 30935 37 100.0 34 ..................................... CGCTGTCCGCGACGGCCGGCGTTGGGCGGCGGGT 30864 37 100.0 31 ..................................... CTCTTCATCGTCGTGACCAGCAGCACGCCGC 30796 37 73.0 36 C.GAT.G.AGC...GA..................... GACCCGGCCGACGCCGCGGCGGAGCTAGGCCCGATG 30723 37 100.0 36 ..................................... TGCTGGCGGCTCTCGGCACTGGAGATCCCCCTGTGG 30650 37 97.3 34 .................A................... CTCCACGCGATCCGCCACGCCCCCGAGCAGATGA G [30628] 30578 37 97.3 37 .............................A....... ACCGTCTGGCTCGCCCCGGGGATAGTCGCGCCGCCCG 30504 37 94.6 35 .......................A.....A....... GACACGATCGGCGGGCAGGGGCATCTGATCCAACC 30432 37 86.5 35 ......TT.....T.......T.A............. GGCGGCATGATCACCTACTGGGGTGAGGAGTCGGT 30360 37 89.2 34 .............T...........A...A.....G. GAGCAAGTCATGCTGGGCCAGTTCGAGTGGGAGG 30289 36 91.9 32 .............T.....-.........A....... GGCACTCAAGCCGAAGATCTGGGTGACGCCGT 30221 36 91.9 34 ......G..-...T....................... CCGGGCGGGCCCGCATAGGCAAACTCGGCCCGGC G [30198] 30150 36 86.5 36 ....T..............-.A.......A.T..... TTCGCCGACGTCATGCCTCCTGCCGAGTACTTCCAG 30078 37 81.1 35 .........T...TTTA...C........A....... GACGCGCCTGGCGGCGAGCGCGGCGGGCCAAGTGG 30006 37 75.7 32 ATG......T...TT.....CT...........G... TACTACGACCCGGTAGGCGGTGAGAACGTGGA 29937 36 91.9 34 .............T.....-........A........ GACGAGATGATCACCAGCATCCGCCATTCCGCGG 29867 37 81.1 33 ..G......GA..TT.....C........A....... ATGTCGACCATCGTCAAAACATCACGGCGCAGA 29797 37 78.4 37 ..G......G...TT....TC........AG...... AAGCACGCCCGCGAGGTGATCGCCGAGCACGGCGCCG 29723 37 94.6 35 .............T...............A....... CACGATGCGGCCCGCGACGCCGGTGGGCGCTCGGA 29651 37 97.3 32 .............T....................... CGGATGGCCGAGGCTGGTGCTCACTTCCGGGG 29582 36 78.4 0 ..........C..T........C..C..C.G-.T... | G [29562] ========== ====== ====== ====== ===================================== ===================================== ================== 48 37 95.5 35 GCAGCGCCGAGGCCCCGGCCTCGGCGAGGGTCACAAC # Left flank : ATCGACAGACTTACCGCCGGCCGTCACTCGGCCGCCGCCGGCCGCCTCCGACGCCAGCAGACCCGCCTGCCAGGCACACGACGCCTTACCCACGTCATGCGCCTCACCAAGAAACCGGCCCAGGTCACCAGCGCCGAACGCCGACGCGAACCCCTCGGCGAGTTGCCCCGTACCCCACAAATGATCAACTAGCGTGTGTCGCCGACCAACAGCGTTCACGCTGTGCGCCCACAGCACCGCATCCCCCCGGTACGTCCGTCGCCATGCCCGACCCCCGTCATCAATCGGACCGCCACATAGAACCGCGCGGGTCCGACAAAATCGGGCCACCGGCCCACAGCCCCCCGGACGACATCCGACCAGTCGGCGATCTAGGAACCCGAAGCTCCCCCTGAACCACCGGGACCTTCCGAAGCAGAAATCAGCACAAACCGGACAGGACTTGCCAGCCAAGCCGATCTGTCGGCACCCTGGCATCGCAACCTCCCTGCTCAGGCAGG # Right flank : CCGCCCTATCGCTGTCGCTGTTCGGCGCTGGGGGCGAACTGTTTGATCCAGCCGCATCGAGGTGCGGCTGGTATCTCGGCCGCAGGGTCCGGAGCCCGTAGCACCCGGATCGTCGAGGGAAGCCCCTCCGGGATCACCGCTTCAAGACGCTGGCTCTGGCTGGCCGACTGAGCGGTGGCCTGCCACTCCCCTGCCACGTGCACCAGAGCGACAACTCGTCGTCCAGCGACGGCCAGGCCGGTCTCGATGCCGAGGGAGCGCGCGAGCGCGGCGAGCGTCAGCGCGAACTCCGCGGGTGAGGCTTCTCCGGATCGCAGCACGGTGGCCGTGGGCCGCAGCGCGTCCTGGTTCACGCCGCGTAGAAGGAGGTCGAGGTTGGTCCGCAGGGCGAGGACGGCGAGCGTCGGGTCGATGCTGTGCTCGGCGAGTGCCAGCGCGACCGGTCGCAGCTGTGGGTCCGAGGCCAGGAACGGGAGGAGTTCCTGCCGTCGGCGTTGACG # Questionable array : NO Score: 3.04 # Score Detail : 1:0, 2:0, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCGCCGAGGCCCCGGCCTCGGCGAGGGTCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-16.80,-17.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [81-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 2 41463-41788 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEACQ010000291.1 Frankia sp. CN6 NODE_76_length_44939_cov_42.879809, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 41463 37 100.0 36 ..................................... ATGATCTTGTGAGTGTCTCCTGAGACGGGGCGCTAC 41536 37 100.0 35 ..................................... CGCCCCAAGCGCGCCTAGAAAGGGCCACCCCATGA 41608 37 100.0 34 ..................................... AAGAACGCGTCCGCCAACGTCGGCGGGCCCGACA 41679 37 100.0 36 ..................................... TTGAAGTCGATGTAGAGGAACGTCAGCGCCGCAATG 41752 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 5 37 100.0 36 GCGGCACCGGGGATCCGTCCCCGGTGAGGCTCACAAC # Left flank : CCAAGCCCGCGTGCTCGCCCGCCACCTCCGGGGCGACCAGCCCAGCTACCTTCCCTGGAGCCCGGCCTGATGGACCTGCTGGTCACCTACGACGTCGACACCACCAGCACCACCGGCGCACGCCGCCTCCGCCGAGTCGCCAAGATCTGCGAAGGCCACGGAATCCGCGTCCAGAAGTCCGTCTTCGAGATCGTCTGCACCGAAGCACAGCGAGTTCTCCTCGAACACCAGCTCCGGGAGACCATCGACCTCCAGCTCGACAGCGTCCGCATCTATCCGCTACCCATTCGCTCCCTCGACACCGTCAGCCAGATCGGCACCGGCGTCCAAGCCCACCACCGCGGCGACCAGATCATCTGAACGCGAACCTGCTTCGGAACCCGAAGCACCCCCAGAAACACCGGTACCTTCTCAACTCTAAAACGGGACGAACCGGACGTCGATCTTCGTGTACAGGCGGTCCGGCATGTTCTAATTTAAGAAATCCCTGCTCAAGCAGG # Right flank : CAAGAACGCGTCCGCCAACGTCGGCGGGCCCGACAGCGGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAACTTGAAGTCGATGTAGAGGAACGTCAGCGCCGCAATGGCGGCACCGGGGATCCGTCCCCGGTGAGGCTCACAACGACGCGGCGCTCGCGCTGGAGAGCCGTACGGAGCGCGGCACCGGGGATCCGTCCCCGGTGAGGCTCACAACGGCTACGCCAGCGGAGGCGGCTCGTGACCGCGCCCGCGGCACCGGGGATCCGTCCCCGGTGAGGCTCACAACGCTCCACACGCGTGTGGTAGCGCGGACGAGGACATGCGGCACCGGGGATCCGTCCCCGGTGAGGCTCACAACTCCGGCTCGGGCCCGGCTTCGCTGAAGGTCGCGAGCGGCACCGGGGATCCGTCCCCGGTAAGGCTCA # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGGCACCGGGGATCCGTCCCCGGTGAGGCTCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-15.00,-14.80] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [50.0-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 3 41969-43011 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEACQ010000291.1 Frankia sp. CN6 NODE_76_length_44939_cov_42.879809, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 41969 37 100.0 34 ..................................... GACGCGGCGCTCGCGCTGGAGAGCCGTACGGAGC 42040 37 100.0 35 ..................................... GGCTACGCCAGCGGAGGCGGCTCGTGACCGCGCCC 42112 37 100.0 35 ..................................... GCTCCACACGCGTGTGGTAGCGCGGACGAGGACAT 42184 37 100.0 34 ..................................... TCCGGCTCGGGCCCGGCTTCGCTGAAGGTCGCGA 42255 37 97.3 34 .........................A........... GACACGCTTGTCCAGGAAGCCGATCAGGGGATGG 42326 37 100.0 36 ..................................... CCCAGCCGTAGCCGCCGTCCAGCTCGTCGTCGTCCG 42399 37 100.0 34 ..................................... ATATAGTGCGCGGCGTTCAGCTCCCACGGCTGAA 42470 37 100.0 34 ..................................... CGCAACATCAGCATCATCGTCACGGCGAACGCCG 42541 37 100.0 35 ..................................... GACTCCCGCCAGGTGCTCGTGAGCGAACACCTTGA 42613 37 97.3 35 ................................C.... CTCGTCTGCTCCGCCCACGGCTGGGTCCGCCGCGG 42685 37 100.0 36 ..................................... GACAAATACCCGGGCCTGATCTCGTGTGTGATTCTC 42758 37 97.3 35 ...............T..................... ACGCAGTACACGCGGGTGGTTGCGCTCCACGCTGG 42830 37 100.0 37 ..................................... CACATCAACCCGGCCGGCACGGTCACCTACAGCGAAC 42904 37 97.3 34 .......A............................. GACACTCGCCCCAACGGTGACGTTCCATTTTCTG 42975 36 73.0 0 ....G..ACC..GG....-.T......TC........ | T [42979] ========== ====== ====== ====== ===================================== ===================================== ================== 15 37 97.5 35 GCGGCACCGGGGATCCGTCCCCGGTGAGGCTCACAAC # Left flank : CCGGGGATCCGTCCCCGGTGAGGCTCACAACATGATCTTGTGAGTGTCTCCTGAGACGGGGCGCTACGCGGCACCGGGGATCCGTCCCCGGTGAGGCTCACAACCGCCCCAAGCGCGCCTAGAAAGGGCCACCCCATGAGCGGCACCGGGGATCCGTCCCCGGTGAGGCTCACAACAAGAACGCGTCCGCCAACGTCGGCGGGCCCGACAGCGGCACCGGGGATCCGTCCCCGGTGAGGCTCACAACTTGAAGTCGATGTAGAGGAACGTCAGCGCCGCAATGGCGGCACCGGGGATCCGTCCCCGGTGAGGCTCACAACAAGAACGCGTCCGCCAACGTCGGCGGGCCCGACAGCGGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAACTTGAAGTCGATGTAGAGGAACGTCAGCGCCGCAATG # Right flank : CCTGTTGCCGATAGGCGACGCCAGGGCATGAGTGCAAGCGGCGAGGGGATCCATCTCAGTGGGTCACAATGCGGGCTCCTATACCTACGACCCTGCGGCCATTACGAGAAGCATCGATCTTCCCTCCAGGCACTGGCCGCGAAGGGAAAGGATTAGGCGGGCAACAGAACAGGTCGGCACTGAGACCGGCCGTTGGAGCGATGTGCTTGTCTTCGCCTGGTAAGGTCGGGCCTCCTGCTCGAGGAGCATGGTGTGCTCTGATCGTCAGGTCAAGGATGCGGGAATGTCATAAAGCGTTGATGCTAGGTCTTCGCGAGTCTCCGTATTTTCGTCGATCGCTCTTGCGTCCCTGGGGTGGCCGGCGTGATTCTCCTGACCGGCGGAATTCGCTGTGGCTCTCGGAGCCGGTCAGGAGGGTTCAATGACTCAGCCCGCGCCGTACTCGATGCCCGGTAGCTCTTCGTCAGCATCAGGGTGGTTCGGCCCCTTGGCGTCGCCGG # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGGCACCGGGGATCCGTCCCCGGTGAGGCTCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-15.00,-14.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 46389-50806 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEACQ010000243.1 Frankia sp. CN6 NODE_17_length_100873_cov_32.848020, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 46389 28 100.0 33 ............................ CGGCGCGAACACCCCCGGAACCGGCTCCCCGGC 46450 28 100.0 33 ............................ AGCACCTCAGGCAGTTCGACACCTCGGCACGGG 46511 28 100.0 33 ............................ TCGTGATCCTTCAGCCGGCCCACCAGCCGGGAG 46572 28 100.0 33 ............................ AAGGCCGCAACACAGATCGTCCTCTGGGCCCAG 46633 28 100.0 33 ............................ CAGGTAGCGGGCGCTCTGGCTGGGGTCCACCGC 46694 28 100.0 33 ............................ GCCACCTCGAGCGCGCGGCGGCCCACTGGCCGC 46755 28 100.0 33 ............................ CATTCCCGAGCTCCATGCGAACCACAGGCCAGC 46816 28 100.0 33 ............................ GGCGCGTGACCCCCGTGAAGCCGTCGGAGAAGC 46877 28 100.0 33 ............................ CCAAGCTGCAACTGGACGAATGGCAACAGCATG 46938 28 96.4 33 ...............A............ TCGACCTTGAGGTTCTGGTTCCCGACGAGCTGC 46999 28 100.0 33 ............................ CACAGGCACGACGCCCCGCCGTACATCAGCAGG 47060 28 100.0 33 ............................ CAGGCGAAGGCCCACCGCGCCTGGGCCGACGAC 47121 28 100.0 33 ............................ TCGGCGAGCTGCAGCGGCCAGCCCCACGCCGCG 47182 28 100.0 33 ............................ CGTGGCGGGGAGGGTGCGGTGTGCTCGCGGATG 47243 28 100.0 33 ............................ CCCTGCGTCATCGCCGCGACCAGCGGAGCCGCG 47304 28 100.0 33 ............................ AAGGCAAGAACGCGCGCGGCATCCTGATCGGCG 47365 28 100.0 33 ............................ CGCCCGTGAGGCGCCCAGCCATCCACCACAGGC 47426 27 92.9 33 ...............A...-........ CAGCCCATCGCGGCTCTTTGTCCAGACGTCGCC 47486 28 100.0 33 ............................ CGGCCGAGAGATCGTCACGGCGATCGGCAACGT 47547 28 100.0 33 ............................ GTCATCAACGGTCCGGTGACGTTCCGCGCCGGG 47608 28 100.0 33 ............................ ATCAACGGGGACACGAACGGTCGCGGTGGTGTG 47669 28 100.0 33 ............................ GGCTACCGGGGCGCAGTGATGCACTCCAGTGAG 47730 28 100.0 33 ............................ GCGGTCGCGATCCCGGTGATGGCGGCGATCGCG 47791 28 100.0 33 ............................ TGCGCCGCGGCGAGACCCAGCTTGGTCGGGATC 47852 28 100.0 33 ............................ TCCATCGCCGGGATGTCCCGCTCGGTCAGGAGG 47913 28 100.0 33 ............................ TCACCGCCGGCCGGATCATGGCCCTGACTGTCG 47974 28 100.0 33 ............................ CCGCCACCGCTACCGCCACCGGGCGCGGCGTAG 48035 28 100.0 33 ............................ AGCTACGGGCACACGATCAGTCGCGACCAGACG 48096 28 100.0 33 ............................ GTCGGCCTGGTCAACGGGCATGACGCGGTCCGG 48157 28 100.0 33 ............................ CTCGTCGTTGAGCCGGCCGAAGGCGGCGATCTC 48218 28 100.0 33 ............................ GACGTCGCGGCGCGCGGCGACGACCATGGCGAG 48279 28 100.0 33 ............................ CACAGGGCCACCAACATGGGCCGGGCTGCGGTG 48340 28 100.0 33 ............................ GCCCCGGCCGTGCCGGCGGTGTCGCCAGCCGAG 48401 28 100.0 33 ............................ CTGCGCCGCCTGCTCGGCGAGACCTACCTGTGG 48462 28 100.0 33 ............................ CCTCGGGCTGACCGAGGAGGACGGCACCCCGAA 48523 28 100.0 33 ............................ GAGCACCAAGCGGGCCTGTCCGCCGCCATGCAG 48584 28 100.0 33 ............................ CGATCTTTCTTCGAGTTCAAGTACCTGCGGGAG 48645 28 100.0 33 ............................ GGACGGCGCCGACTACGCCCGCGGCCAGAAAGA 48706 28 100.0 33 ............................ CTCCGCCCCCGCGCCACCGCCAACGGCGATGGC 48767 28 100.0 33 ............................ GACTCGTCCCTGCGCCCGCTGACCTGGCACGAC 48828 28 100.0 33 ............................ GCGCGGGCAATAACACCCTCAGCATCCCGACAG 48889 28 100.0 33 ............................ GAGTTCGCCTACGGCCGGCTTCGCGCGGTCACG 48950 28 100.0 33 ............................ GCGGCCGGGCCGGTCGAGACCGACGAACCGCCG 49011 28 100.0 33 ............................ GGGGCGCTGTCGGACGTCACCGCCACGCCCAGC 49072 28 100.0 33 ............................ CGCGGTGTCGGTCGGACGCGCGGCCCGAAGTGC 49133 28 100.0 33 ............................ CAGGCGACGAAGCCCCTCGGCATCGCCGAGCAC 49194 28 100.0 33 ............................ AGGCCGAACTCGGCCGCCCAGGCCCGCAACTCC 49255 28 100.0 33 ............................ GACCTGCTCAAGGACACGGAGGGTCGCTACTAC 49316 28 100.0 33 ............................ CACCACAGATCAGTACCGGCGGGTAATAAACGC 49377 28 100.0 33 ............................ TCCGTCCGGTAGCCGGTGATCTCCCCGGCCCGG 49438 28 100.0 33 ............................ CCCTCGGCGGACGAGGCCCAGGTGAAGAAGCCC 49499 28 100.0 32 ............................ CGGGCGCGCTGACGGCGGAGCTTCGCCTGGAT 49559 28 100.0 33 ............................ GCGCGCGGCGACATGGACGCGGCCGGCGCCGCG 49620 28 100.0 33 ............................ CCCCTGTACGCAGGCAACGGCCTCGGCCCCAGC 49681 28 100.0 33 ............................ CCTGGGAAGGTCAGCAACGCTGTCATCAGCCGC 49742 28 100.0 33 ............................ GACATCATCCACGGCCAGATCACGATCAGCCCG 49803 28 100.0 33 ............................ GCGGTCGTCGTCTGGCCGTACACGCCATAGGCC 49864 28 100.0 33 ............................ CGTGATGTAGCTGCCGCCACGTTCCAAGCCACC 49925 28 100.0 33 ............................ GCTGCGGTCGCCTCGAAGTCCGGCGTGATCGAG 49986 28 100.0 33 ............................ ATGCTGAACCCGCCGAACTCCGTCACCCGGTAG 50047 28 100.0 33 ............................ ACGGGCTCGGGCTCGCGTCGGGTCTCGCGTGGA 50108 28 100.0 33 ............................ TCACCTACCGTGATAGTCGTGATCAACGCTCTG 50169 28 100.0 33 ............................ TTGACCGCCGGATCGACGGTTGGAAGACGGGAG 50230 28 100.0 33 ............................ CGCACCCAGCCGGCCGCGATGTCCGCGGACGCG 50291 28 100.0 33 ............................ TGATGTCCGCACGCCGTCCGGTCCGCATCGCGA 50352 28 100.0 33 ............................ AAGATGCGACGTTTCCCGTGTGGCTGTTGGTCA 50413 28 100.0 33 ............................ CGGGTGCCCTCGTGGTGCAGCAGGGCGATCGGG 50474 28 96.4 33 ............G............... CTTGACCTCGACCTCGTACTCGACGTCGAACGG 50535 28 100.0 33 ............................ CTCTCGGCAAGCCGGACGTGCCAGGCGGTCGGG 50596 28 100.0 33 ............................ TAAGCGGCGACGGATAGTGAACCGAAACGGCCG 50657 28 100.0 33 ............................ CACCCGACCGGTGTGGCCGGTGAGACGGCTGCG 50718 28 100.0 33 ............................ GCCTGGACGACGCCGAGCGTGCGCGCGTGCAGG 50779 28 78.6 0 .....................AAT.CGT | ========== ====== ====== ====== ============================ ================================= ================== 73 28 99.5 33 GGAAGATCCCCGCGCGGGCGGGGACGAC # Left flank : CGAGGTGACCGGCCGCGGGGTCGAGGTTCGCCGTGTTCGGTGGTGTCGGAGCCGGTGACCGACTACATCAGGTTCGAGCACGCGACGACCGCGTCGAACGTCAGCGCCGGGGAGCAGGCCCGTTGGCTGCCCCGGCACCTGGCCACCGGCCTGTTGTTCCCGGCGAACGACTTCTGGGTATTCGATGGCCGGCGGGCCCAGTTCAATTACTTCTCCGGTCGGGGAGAGTTTCTGACGACCCGTCTGTCACCCGACGCGGTGATTGCGACGCAGTGCGCGGTGGCGTTCGAGGCCGCGTGGGAGCGTGCTGTTCCGCACGAGACGTATGACCCGGTCCAACACTGATCGCCCTCACGTCGGGCAGTCTTTCTCCTGTGCAGCCGTCCTCCTCCAATGCCCAACAGGCCCGTCAGCTTCCCGCGGACCGGCTTCGTGACCTGCGCCGCGACGCGGCTCTGACCACGATCGAGCTGGCTGTCGGCGCAGGTAACGTCACGAGC # Right flank : TCAACCTGATTGGGACAGCGTTGTCCAGGAATTAGCTACTGGTCGCGTCTGAATCTACTGGCTGGTCTTCCTCGTGCTGGGGTCGGTTGATCCAGGCTGGCTGGGGCGGCTTCGGCGGGGTCGGGGGCTGGCGGACGAACCTTTCGGGGTGGGCGGCGTAGGCCGCGTCGAGGACTCGGGCGCGGGCTTCGCGGACGAGGGCCGCTTCGCCGTGGTGGACGGTCGCTGGGGTGAGCAGGCCGATCCCGGAATGCCGGTGATCGTTGTTGTAGTAGTCGAAGAATGTCCGGCACCAGACCCGGGCGTCCTGCAGCGTCGCGAACGAGGACGGAAAGTCGGGCCGGTATTTCAGCGTCTTGAAGTGGGCCTCCGAATAGGGGTTGTCGTTCGACACCCGTGGCCGGGAATGCGACCGGGTGATGGCAAGATCGGCGAGTAGCAGCGCGACGGTCTTCGAGGTCATGGAGGTGTCGCGGTCGGCGTGGATCGTCAGCTGGTCA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGAAGATCCCCGCGCGGGCGGGGACGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 52479-52994 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEACQ010000243.1 Frankia sp. CN6 NODE_17_length_100873_cov_32.848020, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 52479 28 100.0 33 ............................ CGGTAGAAGACGTCCTGGACGTGGTAGCCGTAG 52540 28 100.0 33 ............................ CGGAACACCCTCGGGGCCGGGCCGGGCCGCGAG 52601 28 100.0 33 ............................ GCCAATCATTGGCATTTATGACTGTTCTCTGCT 52662 28 100.0 33 ............................ GCCGCGGTCGTCCAGCCCAGCGCCAGCGCGGTG 52723 28 100.0 33 ............................ ATCAGCCCGTCCGCCATCGCCTCGGCCGAGGCG 52784 28 100.0 33 ............................ GTCTTACGCAGCGTCAGGTCGTGGCGGTCGCGC 52845 28 100.0 33 ............................ GAGCTGCGCCGGAGGTTGGAGACATGAGCCCAG 52906 28 100.0 33 ............................ GTGCCCTGTCGACGGCGCCGGGCACCGTGGTAC 52967 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 9 28 100.0 33 GGAAGATCCCCGCGCGGGCGGGGACGAC # Left flank : CACGAAGCGGGCCTTCGCCAGCTCCTTCTCCAACCGCTCCTTCTCCGCCCGCAGCCTTTCCATCTCACGGTCACGGTCATCCACCGGCGGGCGGCCCTTCGGCTTCGACAACCCCGCAAGCGCTCCCGCGTCACGCGCCTTACGCCACTCCACAATATGGGCTGAGTACAGCTTCTCCCGGCGCAGGATCGCACCCTTCGCACCCGGGCCCGTCGCCGCCTCGTACTCCGCGAGAATCCGCAGCTTGTACCCCGGCGAGAACTGCCGCCGCCGCGCCTTCGGCTCCACCTCAGGATCCGGCCGCCGGCCACCGTCCTCACGCTCGTCCACACGGACATCATCGACCAGGCCCAGCCCGGTCGTCACCGCCACCACCACGATCTCCCTCTCCCAACTCCGCCCATGTCATGAGATACTAGGCCTAACCTGTCTCAAGTCATCTTGACGGGTAGGGGGGCGGGGACGACGCGGCGCCGCGCGTACGACTCGGTAACCGAGCC # Right flank : CACTTGCTGAGCTGGGGGTTTGGCGCCGGGTCTGGACAGAAAATATCAGTCCGTCGTGGTCGAAGGATCGTTGCAGCCACAGTCGGTCGGAGGCGGTCCCCGCTCCATGGGCGCCAGGCGAAGCCATTTGTGCGTCCATGCGACCCCGGCGTGATCGAGGTGCGCCACAAGTGATTCAATGCGTGCGTCAAAGCCGACGACGGGGGTGGGCGCCGTGCTTGATGCGGCCATGGCTGTGGTGTGGGGGAAGTCGGATGCGCAGGGGTCGCCGCATCTGCTGCTGGGTCATCTGTTGGATACGGCGGCGGTCGGTGAGTTGATCTGGGATCGGTTTCTGGCTCCGGTGGTCAAGGGCCATCTGGACGAGGTCAGTGGCGGGCGGGGTCGTTCGTTGTTCGCGTTGCTGTGCGGTCTGCATGATGTGGGTAAGGCGACGCCGGCGTTTCAGTCGAAGGATGGCGCGCTCGCCGTGCGGGTGCAGGCGGCTGGTCTGGGTTGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGAAGATCCCCGCGCGGGCGGGGACGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [25.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.27 Confidence: MEDIUM] # Array family : NA // Array 3 63836-62710 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEACQ010000243.1 Frankia sp. CN6 NODE_17_length_100873_cov_32.848020, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 63835 28 100.0 33 ............................ TAGAGAGCCACCTCGAATACCGCGCCCGCCTGA 63774 28 100.0 33 ............................ TCGATCCGGTGGGTCGGCCCGGACAATGAGACG 63713 28 100.0 33 ............................ GTGAGCGACTGGATCGAACGATCCAAGGCCACC 63652 28 100.0 33 ............................ GATGTTGTGCCAGGAGCAGGCCGTGTCGAAGGG 63591 28 100.0 33 ............................ AATCATCGACCGTTCAAGCGAGTCCGCGAACTC 63530 28 100.0 33 ............................ CCGTCGAACGAGCCCGTGATCGTGGGCACGTCG 63469 28 100.0 33 ............................ CTTCGATGTCCCCGGCCTCGGCCAGCAGGTCGG 63408 28 100.0 33 ............................ GCTTACGTACAGTCGATGGCCTCGCTGTTGGAG 63347 28 100.0 33 ............................ ACGCCCACGGAGAACGTCACGACCGCCACGCCG 63286 28 100.0 33 ............................ GTCGTCCGTTGCCCGGGTGAGCTGGACAAGCCG 63225 28 100.0 33 ............................ CCGTGACCCCGGCGGAAGGCATCGTCATCGACG 63164 28 100.0 33 ............................ CGCCCCAGGTCGTCGGGGCTGTCCAGCGAGTCG 63103 28 100.0 33 ............................ CTCGTTGATGTACGGCAACATCGTCGCGCCCAG 63042 28 100.0 33 ............................ GCGGCCGGGTCCATCCGCAGCAGCGCGTCCGTG 62981 28 100.0 33 ............................ ACGACCCGGCGGCGGCGGCCCAGCATCGGGGCG 62920 28 100.0 33 ............................ CCGACGACCTTGAGGCAGAACCGCAGGACCACG 62859 28 100.0 33 ............................ GGCGGCCATCAGGTACCGCCGGCGGTCGCGGGC 62798 28 100.0 33 ............................ GTCGTACCGGCCGGACCAGGCGGTACGGACCTG 62737 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 19 28 100.0 33 GGAAGATCCCCGCGCGGGCGGGGACGAC # Left flank : CGTCAGCAACCTGCGGCTGTCCTCGGAACTCACGGGAAGATCCCCGCGCGGGCGGGGACGACGCGGCGCTGCTCGGCACGAAGGGCGTGCCCAGCGGAAGATCCCCGCGCGGGCGGGGACGACGGCGGCTACCCGAGCGGGGGAGAGGTTGTGGACGGAAGATCCCCGCGCGGGCGGGGACGACCGGTCCGGCCGGTCGCGCCCGCTCGGCGAGCAGGGAAGATCCCCGCGCGGGCGGGGACGACTCGCGGATGGCGGTGATCAGGTCGTCGATGTCGGGAAGATCCCCGCGCGGGCGGGGACGACCTCCGCGACCAGTGCACGGCGGCCGGTGTCCCGGGAAGATCCCCGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCGGGCGGGGACGACTAGAGAGCCACCTCGAATACCGCGCCCGCCTGA # Right flank : GCTTGCTGAGCTGGGGGTTTAGCGGCGGGGGCGGGCGAACAGTATCAGTCCGTCGTAGTCGATGGGTTCGCCGCGGTCGCGGCCGGCGGTGCGGACGGTCCAGTGTTGTTCGTTGTCTGCTGGTTCGATCATGATGGCTTGGCCGTCGCCGACGCGGTGGGCGAGCAGGGTCCAGAGGCGGTCGCGGACGCGGGCGCTGGGGTTGCCGACGAAGACTCCGGCGGCGACTTCGATCATCCAGCGGGTGAGGTGGCCGCGCAGGCCCTGGGCCGTGGCGATGAGGACGACGACGGTCACCAGGGTGGTGGCTGTTCGTCGATGTCGGGTCCGGTGACTCCGACGATGCTGTTCTCGGGTGAAAGGTCCGCGAGGTCGGCTGCCCAGTTGATGCCGCCGGGGACGGCGCCGTCGAACTCGTCCCAGAGGTGGAGTGAGTCCTGGTCGGGGATGTCCGCGTCGTCGCCGAGGAGCAGGGTCTTGATGTCACGGACGATGCGGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGAAGATCCCCGCGCGGGCGGGGACGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [35.0-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.74 Confidence: MEDIUM] # Array family : NA // Array 4 66315-64030 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEACQ010000243.1 Frankia sp. CN6 NODE_17_length_100873_cov_32.848020, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 66314 28 100.0 33 ............................ CTGTAGTCGATGAGCGGGGCGGGGAACAGGCGG 66253 28 100.0 33 ............................ ACACCGCTACGGAGGCCGTGGATGCTGGTTAAG 66192 28 100.0 33 ............................ GCATTCCTCGGGGAATTAGGCGAGTATCCGGCG 66131 28 100.0 33 ............................ TCCAGTCGGGGTGGGTGGCGTCGAACTCGGGAC 66070 28 100.0 33 ............................ CGCTCGCACCGGCCGACCTGGACCAGGTAGGCC 66009 28 100.0 33 ............................ CTTTCCGGCGGCATGGAGGTCGTGTCCCGCCAG 65948 28 100.0 33 ............................ GTGGTCCTGGCCCTCGCCGGCGGGGGCCAGGCG 65887 28 100.0 33 ............................ CCTGCGCTACCCCAGAACAGCCGCCCAACCTGG 65826 28 100.0 33 ............................ ACGATCAACCGCTGTTCGTCGACGTCTTTGTGC 65765 28 100.0 33 ............................ GCCCTGGTCTGGATCGCCGGCGCGATCTGGTCC 65704 28 100.0 33 ............................ GCGCGGATCGCGGGTGGCAGGATCAGCTCAGTG 65643 28 100.0 33 ............................ GCGTTCTCGACGATCGCCCGACCGTCGAGAGGG 65582 28 100.0 33 ............................ CCGGCCCTCCCCGGACGGGTCCGTCCTACCGCG 65521 28 100.0 33 ............................ GGCCGGGACCACCAGGCCGTCGCCCGGGACGAG 65460 28 100.0 33 ............................ CCGACCTCCATCGTCAGGTCCTTGAGCAGGGAG 65399 28 100.0 33 ............................ TCCGAGATGCGCTCGGGCAGGGCCGCCGTCAGC 65338 28 100.0 33 ............................ ACAGCGTTCCGGCGGCGTCGCTGGCCATCAGGC 65277 28 100.0 33 ............................ CGCGCCTCCGTCTCCGAGCTCGGCCCGGTCGTG 65216 28 96.4 33 ..........................C. CCGAACCGGGCGGTGGCGGAGAACCGGCGGCCG 65155 28 100.0 33 ............................ TTCCTCGAGGAGAAGGCGGACGTCGCCGACTGG 65094 28 100.0 33 ............................ AGGTGGAGCCCGGACATGTCCTGCGGGTACGCC 65033 28 100.0 33 ............................ CGGGTCTCCGCGTTCGCCCGCCGGACCTCCGTG 64972 28 100.0 33 ............................ ACGGGCGGCGGCGCGGGCGTCCGGTCCGGTCAC 64911 28 100.0 33 ............................ CACTAGCGGAACCGGTAGGCGTCCAACCGTGGG 64850 28 100.0 33 ............................ TCCGAGATCGCCGCCGCCAGCGCTGACCTGCTG 64789 28 100.0 33 ............................ TTCGCTCCGCCCGCGCTGCGCGCGCTCGGGAAG 64728 28 100.0 33 ............................ GCGAGCGCGGCCTCGGCCTCGCGGGCGGCCGCA 64667 28 100.0 33 ............................ TGGGGCCGAGGGCGTACCGGCCGCGCACGCCCC 64606 28 100.0 33 ............................ ACCTACTACGGCCTGAAGGTCCCGAAGTGGGAG 64545 28 100.0 33 ............................ TATGAGGCGCCGAGCGGGGTGCCCACCTATAAC 64484 28 100.0 33 ............................ ATCGGCCCGTCCGCCATCGCCTCGGCCGAGGCG 64423 28 100.0 33 ............................ CCGCACAGCGGCGAGGCGATCCCGCTCGAACCG 64362 28 96.4 33 ................T........... GTCAGCAACCTGCGGCTGTCCTCGGAACTCACG 64301 28 100.0 33 ............................ GCGGCGCTGCTCGGCACGAAGGGCGTGCCCAGC 64240 28 100.0 33 ............................ GGCGGCTACCCGAGCGGGGGAGAGGTTGTGGAC 64179 28 100.0 33 ............................ CGGTCCGGCCGGTCGCGCCCGCTCGGCGAGCAG 64118 28 100.0 33 ............................ TCGCGGATGGCGGTGATCAGGTCGTCGATGTCG 64057 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 38 28 99.8 33 GGAAGATCCCCGCGCGGGCGGGGACGAC # Left flank : CGGCTCAGGCCGCGCACTCCGCGCAGATCCCCCAGCCACTCGTCGAGCATCTGCGGCTGCCACATCCACGGGAACGTGTCCGCGTGCACGGCGAACGCCCGCACCGCCCCGAGCCGCTTCTCGACGGTGCTCGCCGCCAGGTTCCGGGCGAGCTGCTGCGCCTCCCAGCCCGCCAGCATCGCGGCGAACACCTGCTCGTCCGGCCGCAGCAATGCCACCCCGTCGACCAGGTGCAGCGCCGACGAACCCGCCTGTGGCCCTCCCAAACCCCGCTCCATCCCGCCCCTTCCGCCCCGCTTACATCCGATGAAGGGATATTTCACCAGATGAAAGACGGTGGTGGATGACCAGGTCAGCGGCTCCTTCGGCGCCCGCCTTGGGGCCGAGCCAGCGCGCGAAGCCCAACGGCCCCAGCGCCTCCTACGGGAGTGCGTTCAGACGCGAGTGCTTCATCCGATGAAACCCGCAGCGGTCGGAGCAAGATATGTAGAAGTAATACG # Right flank : CTCCGCGACCAGTGCACGGCGGCCGGTGTCCCGGGAAGATCCCCGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCGGGCGGGGACGACTAGAGAGCCACCTCGAATACCGCGCCCGCCTGAGGAAGATCCCCGCGCGGGCGGGGACGACTAGAGAGCCACCTCGAATACCGCGCCCGCCTGAGGAAGATCCCCGCGCGGGCGGGGACGACTCGATCCGGTGGGTCGGCCCGGACAATGAGACGGGAAGATCCCCGCGCGGGCGGGGACGACGTGAGCGACTGGATCGAACGATCCAAGGCCACCGGAAGATCCCCGCGCGGGCGGGGACGACGATGTTGTGCCAGGAGCAGGCCGTGTCGAAGGGGGAAGATCCCCGCGCGGGCGGGGACGACAATCATCGACCGTTCAAGCGAGTCCGCGAACTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGAAGATCCCCGCGCGGGCGGGGACGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 5 73332-71846 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEACQ010000243.1 Frankia sp. CN6 NODE_17_length_100873_cov_32.848020, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 73331 28 100.0 33 ............................ ACCGTCTTCGCCCAGGCCATCCGGTCGTACCAG 73270 28 100.0 32 ............................ TTGATCCCGGAGTTACCGAGCCCGAACCGCTG 73210 28 100.0 33 ............................ CAGCGCATCTCGCTGAACGAGACACCGAGGCGC 73149 28 100.0 33 ............................ TACGTCGCACCCGGCGACGCGCAGACCGTCGCG 73088 28 100.0 33 ............................ GTGCAGGACGGGCCCAACAACCCGCACGACTGG 73027 28 100.0 33 ............................ CCCGCGAGCAGCAGCTTGCGCAGCTCGTAGGAC 72966 28 100.0 33 ............................ GACTTGGTCTACCAGCAGATCGATAACCCCGAG 72905 28 100.0 33 ............................ CCAGGCGCCAGCGCCTCGATAAGCAGACCGAAG 72844 28 100.0 33 ............................ TACACGCACAGCGTGTTCATCACGCCCATCGAG 72783 28 100.0 33 ............................ CCGTTGGTGGCGAGGTTGCCGGTGTCGCCGCCG 72722 28 100.0 33 ............................ ACTACACCTGAGCCGAGTTGGTCCATGCGGGAC 72661 28 100.0 33 ............................ GATGGCGCGCATCTCCGAACCCCCTCGGCGTCG 72600 28 96.4 33 .......................G.... ACCGCCGTGCCGATGGAAACGGCCCGGGTGCCG 72539 28 100.0 30 ............................ GACCAAGCTCCAGCACACCCCGACCGGCGG 72481 28 96.4 33 .............A.............. GCCCTGGCTGGTACGAGCGGGAGACGACGCGGC 72420 28 100.0 33 ............................ GTACGGGATGGAGCCGACCCATCCGAGGGCGGG 72359 28 100.0 33 ............................ GTGACCTATCGTGGCGGAGACTGGTACGACCAT 72298 26 92.9 33 ..............--............ TGGGAGGCACGGCGGGCGCCATCGTCGCGGACA 72239 28 100.0 33 ............................ ACCCAGTGGTCATCCGGCGGCACGTCAGGGTCG 72178 28 100.0 33 ............................ CAGCGTCGCCAAGCTGCCAGGCAAGACCGAAGG 72117 28 100.0 33 ............................ GCGTTGGAACTGGCCTGGGATGGCTCCTCCGGA 72056 28 100.0 33 ............................ GTCCAGTCCAGCCACAGCGGAACCCGCCAGTAG 71995 28 100.0 33 ............................ GCGGTTATCGTCTGCCAGACGACACGCCGCCGC 71934 28 100.0 33 ............................ GCGCCTCGCGCACCACGTCAGGGACCAAGCCAG 71873 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 25 28 99.4 33 GGAAGATCCCCGCGCGGGCGGGGACGAC # Left flank : TCACCGACGCCCTCGACCTGCTCGCCGGAACCCCCGCCCTCTACCCCTGGGTGGACGCCGAGTTCGGCTCCGAGCTGACCACCACCGCCATCCGCGCCGCCCTCCTCCTCTCCGAGCTCCACCTCGACAACGGCGACCACCAAGCCGTGCTCGCCGCGACCACCCGCGGCCTGGCGATCCAGCCCGCCCACCCCGGACTGTTCGCCCTACGCCTCCGCGCCCACCACGCCGCCGGCGACCCCACCGCCGTCACCGCCGACTACCGCGCCTACCTCCGCGCCGAACAAGCCGACGACCCCGACGCAGACACCGACCCCGACCTCGCCCACCTCCACCACACCCTCACGAGAAACACCCGCCGGCCCCGGCCGACCGCCACCAGCTCCCGCGACGCCGACGATCTTGACCCCTGGTAGAAGCTCAAACCGCTGACAGCAAATGTGACAGCGACAAGGGACAGCGTCGCCCCGCCCGGCAGGCGCGCCGGGAGCATGGCGCGT # Right flank : TAGTTACGGGCCCGGCCCGCGTTACGCGACCAGGGAAGATCCCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCGGGCGGGGACGACACACGCGAGGCCCCGCCGACGGTCCGGCTGGTAGGAAGATCCCCGCGCGGGCGGGGACGACACACGCGAGGCCCCGCCGACGGTCCGGCTGGTAGGAAGATCCCCGCGCGGGCGGGGACGACCACCGGGGACTGGCAGGGTCGCGTATTCGACTGTTGCGAGTTCGGCCGGGGCAGCGACGAAGTTTGGCGTGGGGCGGCGATGATGCCGGGTATGGGGGGATCTTCGCGGGATCGGGTGCGTCGGACCGGCATTGTCGCGGTGCTGTTGCTGGTGGGGTCGGTGGTGGCCGCGGTGGTGCTCGCTCGGCGGTATCAGCTGGGTTCGGGGACGGCCCTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGAAGATCCCCGCGCGGGCGGGGACGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [25.0-23.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA //