Array 1 28735-26059 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAVSF010000013.1 Lactobacillus mulieris strain UMB7784 NODE_13_length_46469_cov_23.544409, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 28734 36 100.0 30 .................................... TTCGGCACAGCTTTAGGTTGCGGAATTATT 28668 36 100.0 30 .................................... AGGAACTGAAGCGAGTATGAGAGCTTCTGG 28602 36 100.0 30 .................................... CAACAAGGCGGTCATTATTAAATAAATCAT 28536 36 100.0 30 .................................... TTACAAAAACGCAAGTAAGGCTTTAGCAGA 28470 36 100.0 30 .................................... TTGTATATCCTCGTTTTATCCGCAATTCTT 28404 36 100.0 30 .................................... TATTTCTGATAAGAGATACATTTTCAAGTC 28338 36 100.0 30 .................................... CAAGATAGCAACTCTTGCTCAATTAGCCCT 28272 36 100.0 30 .................................... TAAGATTACTACTGACGACGCTTATACTCA 28206 36 100.0 30 .................................... ATGGGATTTCTTAGAAAGAGAGAGCACAAA 28140 36 100.0 30 .................................... TAAGCAAGTAAAAGCTATAGTCCAGTTCCT 28074 36 100.0 30 .................................... AATTGAAGTTGGTGTTAGATCATTCCAAGT 28008 36 100.0 30 .................................... TTTAATTCCTGATGATAAAGATTAATAATT 27942 36 100.0 30 .................................... AATTTAAGACCAAAACGAAAGGACAAAACG 27876 36 100.0 30 .................................... AAGCTTCAAAGCTCTAAAGCAACAATTCGG 27810 36 100.0 30 .................................... TGTCTTAAGCTTCAACATAATCATCTCCTG 27744 36 100.0 30 .................................... AAGGTTATTAGAAAAAGCAACAGATGCAAG 27678 36 100.0 30 .................................... AAGCGAGATTGGCTTAAAAGATGATTCAGA 27612 36 100.0 30 .................................... GGCTACTGAAGCTGATACGACAGCTCAGGT 27546 36 100.0 30 .................................... AACTCCATCAGTATTTACACTGGCCTTAAA 27480 36 100.0 30 .................................... TTTAATAGCAGCAATGGGTGCTGCTTCGGA 27414 36 100.0 30 .................................... TATATTTTTATGCTCACAATCCCACGCCCC 27348 36 100.0 30 .................................... TACTCCCTACTCTTCGAGTTTTGGGGTAAA 27282 36 100.0 30 .................................... CAAATTAGATTATGATGATGATTATACTAA 27216 36 100.0 30 .................................... AGTTAAGAAGAATACTTACTTGCAATTGGA 27150 36 100.0 30 .................................... GACATTGAGAGAGGCGTTAAAGGAGTTAGG 27084 36 100.0 30 .................................... AAAGTATAAAGATGAAGTATCTTGCAATGT 27018 36 100.0 30 .................................... TCATTAGTAGTACGCGACATAACGAATTTT 26952 36 100.0 30 .................................... TAGTAACAGAGTTTGGATTACAACCCAAAA 26886 36 100.0 30 .................................... CAAGTTCGTAATCATCGTTTATAAAATCAA 26820 36 100.0 30 .................................... ACACGGTCAAGCCGTCAAACTAGACTATGA 26754 36 100.0 30 .................................... TAGTAATTTTTTAACTTTTATGAAACGTTT 26688 36 100.0 30 .................................... ACCTGATGAGTTAAATGGCTTTTTTGGATA 26622 36 100.0 30 .................................... GTGAGCATAAAAATATAACACACATGTATG 26556 36 100.0 30 .................................... TCGGTCACGTTCTAAAATAAAAAACATCGG 26490 36 100.0 30 .................................... AAAAATTAGAACAATTGATGAAAGTGATAC 26424 36 100.0 30 .................................... TATCAAATTATCCAAACTTGGAACAAAGAG 26358 36 100.0 30 .................................... CAAGAATTCTGAAGAATTCGTCGTATGTAT 26292 36 100.0 30 .................................... GCAATATTAATGATTTTGAGCAAGTAACAA 26226 36 100.0 30 .................................... AACAATGTATGAAGGTTGCAACGGCTTCTT 26160 36 100.0 30 .................................... GAAGCAATAGATCTACTATCTTTAGAAAGG 26094 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 41 36 100.0 30 GTTTTAGAAGGTTGTTAAATCAGTAAGTTGAAAAAC # Left flank : ACAAGATTGTCTTAATTCTTATCTAACTAAAATTATTTCAAATTTATTTGAGAATATAAGTGAAAAACATCGGAATAGAATATTTGATAAATGGAGGCAACTTAGCACCGATATTCAAGATATAATCTTTATGACTGACTTACCAATTGAAGTCAATGAAAATGTAGATTTAAAAAAGTTATTTAAATTTGATGGAATTCATTTTGATGATTCTGTACTAAGTGATCCTTATGCTATAATTGAAACAGTTGTTAAAATTCATGTTGAATGTAAATTGAATTCGGTTGTTACTTTTGCAAATGTAAGTCATTATCTTACAAAAGAACAACTGAATAACTTAATTACCTTTGTAAACGAAGTAAATGTACCTTTGATATTAATGGAATTTTCATCTCCGAATTTTAAGGTTGTTAGTGGGGATGCAAGAGTCTGTTATATTGATGAGGATTTTGTCGACTGGTACTGATTTACAATCTGAGAAGCTGATGATAAAACGTCGG # Right flank : GAAAACTAAAAAGAAACTTGATCACTTTACGTTTTAGAAGGTTGCAAAACACTAGGATTTATAGGAGATAAAAATGGAAGGTTTAGCATATGTTATTCTATTTATAGGAGCTTTTATATATTACTATTGTAAAAATAACCGTAAAAAATAATATGATTTTAAAAGTTAGGAATTATCAATTTAACTCTGTATTGACTATAATTATTTTGAATGATAGCATAGCAGAATGGGAGCTAAGCCTAGCCCCTTAAAGTTATTACTTAGCCATTTTATAAATTACTAAGATTTGTGTTACTATAATCAATAATTTAATAACAATGTCTAAGCAGTCTTTTATAACAGCTAAAACGGCTATTCTATAGCTGTTTTTATTTTTGTGCTTTTTATTTTAAAAGATTGTTAAATCCATGATTTAACGAACTCCGCTATTTGTATAGCGGAGTTATTTTTTCCCCTTAACTTAATACAAGCAAAAAGCTTTGAAAATAATGTCAATTGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGGTTGTTAAATCAGTAAGTTGAAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTTAGAAGGTTGTTAAATCAGTAAGTTGAAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //