Array 1 1217804-1216617 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXRS010000001.1 Klebsiella pneumoniae strain RHBSTW-00065 RHBSTW-00065_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1217803 28 100.0 33 ............................ TACGTCGAAAACGAGCGTAAAACAGGTTTCATC 1217742 28 100.0 33 ............................ TAGATGGATTCCTGGGTATCCCCCCAAAACAAA 1217681 28 100.0 33 ............................ CTTTCTCGACGGACGATCCCGTTTACCTCGTTG 1217620 28 100.0 33 ............................ TGACGCTATTTTTTGCCAGGACAACGGCTATGA 1217559 28 100.0 33 ............................ TTACGTGATCGATAGCGGGCTGTCATATAGCGA 1217498 28 100.0 33 ............................ TCTTTATGTCCGCTTGCGAGGCGATCAGGGTCA 1217437 28 100.0 33 ............................ CTCCTGGTTCTGGAGATTTCGACACTTTCAGGC 1217376 28 100.0 33 ............................ TGTTGTTTATGTGCGCCCCTTTACGGCGGAAAC 1217315 28 100.0 33 ............................ TAGCAGTGGGCTCCGTTGCTCTTCCCCGGTCGG 1217254 28 100.0 33 ............................ TCGCGTTTTATGTGGTTGTCGCTGTACCAGCGC 1217193 28 100.0 33 ............................ TACCGTGAGGTCTCCAGAGCGGGCGAAATCCTC 1217132 28 100.0 33 ............................ CCCTGCTGAGCCCACTCGCACACCAACACCGAA 1217071 28 100.0 33 ............................ TGCAAACCAGTTTCCCGGAAATATGAATGACGG 1217010 28 100.0 33 ............................ TCTCCTCGTCCGGTGTGTCTGCCAGTGTGTCAT 1216949 28 100.0 33 ............................ CAAAAAGCGATTTTTTCGCAGCAGGGTCTTGCA 1216888 28 100.0 33 ............................ TCGCCAGCGGCTGCACAAGTCTGACCAAAATCC 1216827 28 100.0 33 ............................ CCCAAACCCGCAGCGCGCACAAAAGCTCGTTTA 1216766 28 100.0 33 ............................ CAGCTCGCTGTTCGGGTTTGACTGACTGATCGC 1216705 28 100.0 33 ............................ CAACAACACGGCATCCCGCGACCTGCTGAATTT 1216644 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 20 28 100.0 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAAGAACGGCTCTGTATTGATTTGGCATTTTCACTCTCGAGGGAAATGGCGGGCCGCTACGATAAACACAAAGTCTCTGAGGCATTCAGAAAGCGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTCCGTGGACGAATGAAGCTGTGGTTTGTCGAACCACGGCCAAATTTTTTTGTCTCAGGCGTCAAAGATTCGGTCGCACAAACCGTTGTTGATTACCTGTTGCAGTACACGCCTGTGGAATCAGGCCTGTTGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGATATTAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAACTCTCGCTCTTTCACAATATGTTGGT # Right flank : TTATGAGGGGTCTACCAGCATTGGCGTACTGGAGTCTTCCCTACACATGTGGGACTTAGCAATAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTTAAAATAATTTTTAGCTAATGAAACTGTCGTTTGGGAGAGGTAGGAATATTTTATTGCGAAAGAGAAGGGAACTGTTTAAAGCAATAACGGCGAATGATTCTTATAAAATGAAGGATAGGGAATTCATATGTTTCGACTTTACCAGTCACATGATTTAATACGCCAATTAAATCCTGAAGACTTTCAATATATTTTGACACCAGCAGGTTCGCTAAGAGAAGCGTGTATACATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCATTTGGCCTACCGAAGGAAATATACAACTCATCTCCACATAAAAGGCCCTATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTATGATGAGGTAGAGCACAGGCTACAAATTGGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1227012-1226557 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXRS010000001.1 Klebsiella pneumoniae strain RHBSTW-00065 RHBSTW-00065_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1227011 28 100.0 33 ............................ CGATTTACCTCTTCCACCCGCTTGGCGGGAAAA 1226950 28 100.0 33 ............................ TGGTCATCGCGCCCCTTGGCCTGCTCTGCGCTG 1226889 28 100.0 33 ............................ TGCGCGATATCCGCGCCGCGTTAGCGATGTGGT 1226828 28 100.0 33 ............................ TTGTCTGGGACAGCAAAGGACGCCGTAACGAGG 1226767 28 100.0 33 ............................ TCCTTCATTAAGTGAGCAATTGCTTCCTTTTTT 1226706 28 100.0 33 ............................ CCTGCAGCTGGTCGTCGAGCTGACGGATGCCGG 1226645 28 96.4 33 ..............T............. TTCATCACGTGTGAGCGGATTTGGCTCTATCCT 1226584 28 92.9 0 ...................A.......T | ========== ====== ====== ====== ============================ ================================= ================== 8 28 98.7 33 GTCTTCCCCACATGCGTGGGGGTGTTTC # Left flank : TTAGCGTTGGCGAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGACTCGACGGCGCAGCGCAGGATAACAGCCTCCAGCTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGCGGTAACTTCGCGAAGCCACGGAAGGCAAGCGCCAGGATGACGCGCTACGTTCTGGGGATGACAAAAGCGTTTTACCCCCGGCTGCGGGCCGGGCAGGCCAGTAGGGTAGACCGGTCCAGGTCAGCAGCAAATCGACGGTGGTGATATGGGGACATACTTTTTCGTTTGATGAATGTTGATGCTGATGCGGAAACCCTGCGGAGCGCAATTGTTGTAAATCTGGCGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : CGCCTTTCAAGTGTCGACAAGTCACGTCTGTGCGCATTTCTCAGATGAAAGGGGATTCCTGACGTAGAGGCATCAATGCCGTGACATAGTTATCCTTAATGTACATCAATGTCTTCGAAATTTCGTTTGGCCAGCACAGTCTCATATGTTTTTTGTATGATTTTACTTATAAATATTCGTGAACTATGTTTGTCCTATACTTTCTTTAGGGGCATCTAAATCATTCGAGTTTATTACTCGTCTGGAGATATTGTTCTTCATATTAATTATTTATAGCTTTTTATATTATTATTTTTGGCTTTTATCTTTAATTCAGTGTGTTGTGGATGTTTTTGATTTTATAAAAAGTTATTTATAAGTTTCCCGGTTTTTAGTATTAATAAAGGGCACATGTTTTTTAAGGAAAAATTCCATGAGGCGCTTGATCAGGGTTTCGCTACAAAATCAACATGCCATCGCGGCGATAAGTTTTGAAAACTGTCCAGCGAAAACCCGGATGT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACATGCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //