Array 1 466-169 **** Predicted by CRISPRDetect 2.4 *** >NZ_GG668063.1 Hungatella hathewayi DSM 13479 Scfld459, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 465 30 100.0 38 .............................. AATGTCTGTGATCTCGATGATATCGAGAACCCTCCGCC 397 30 100.0 38 .............................. AATATGTTTAGCAGAAGGTTACGAGATAGGGCTGGCAT 329 30 96.7 37 .................C............ AATATGAAACTCCCTTTTCCAGTCAGCGCCGCAAGGA 262 30 80.0 33 .................C...T..A.A.AG TTGGGAAAAGATACTTTCCTTTGCACCCCCTCT 199 30 83.3 0 .....C...........CA.....T.A... | C [171] ========== ====== ====== ====== ============================== ====================================== ================== 5 30 92.0 37 GTCTCTGCTAGCGATAGTGGAGTGGATTGA # Left flank : GAGAATTTCGCGGTTATGGAGGGAAGATAGGAGAATTGGATGAATTGAGTTAATGAAATATATGCAAAATACCCATGATTATTACTGGTTATATGGTATAATATGTGTGAATTTGC # Right flank : ATTATTACAAAAATAAACCGTTGAGGGAGTCTCTGCCAGCATTAGAAGCTTATATTAAATTTATGAAAAAATAATTCACAGACGTTAAAAATAAAAAGACAGAGGAGACAAGGATTGAAATACATTTTTATACATGGACTTGGACAGGGGCCGGATAGTTGGAATAAAA # Questionable array : NO Score: 2.58 # Score Detail : 1:0, 2:0, 3:0, 4:0.60, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCTGCTAGCGATAGTGGAGTGGATTGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 45814-45577 **** Predicted by CRISPRDetect 2.4 *** >NZ_GG667631.1 Hungatella hathewayi DSM 13479 Scfld24, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 45813 33 100.0 35 ................................. GTCGAGATGATGGATGATGTTGATTTTCGGACAGC 45745 33 100.0 35 ................................. TTGAGATCGAACCGCAAAGGGCAAAACCTGAGAAA 45677 33 100.0 35 ................................. TAAATCCTAACAATCACGATTATAAAAAGTTTCTT 45609 33 93.9 0 ......................A.....A.... | ========== ====== ====== ====== ================================= =================================== ================== 4 33 98.5 35 GTCGCCTTCCGCAAGGAAGGTGTGGATTGAAAT # Left flank : TGCTGATTACATATGATGTAAATACAGAGACTGCCGCAGGCAGAAGCCGCTTACGCCGAGTCGCAAAGCAGTGTGTTAATTATGGCCAGCGTGTTCAGAACTCGGTCTTTGAAAGCAATATGGATGCGGCAAAATGCAGAGCTGTAAAGGGAATTTTAGAAGGAATTATTGATAAGAATGTGGATAGCCTCAGATTTTACTACCTTAGTGATAATTATAAGCACAAGGTGGAACATATTGGTGCGAAACCAGGATTTGATGTGACAGAACCATTAATTTTTTAGGGCAGTTGTTCTTTAAATAAATAGTTAGATAATTCTTTTGTATTAAAGTGCGAATGTCAAGTGAACATTAAAATAACGGGAGATTCGCACCTGTATTTTAGATGTAGATATACCGAAATATGTAATATAGTTTGATAAAATGATTGAATAAGTCAAAATGATAGAGTTCTGTTGCTGATGAGGAGAAATTCACTTGTAATTTGACTTGTATTTGCT # Right flank : ATTAACGTATTTCTCGAGGCATTTTACATCTCCTTCACTCCATATTCCCTGTTGACAACGAACCTCCTTGTCTCAGGGAATCTAATAGGTGCCTAAATGTTGAGAAAGGCGTTTAAAACAGCTGTCTGGAGCAATCGCTTACATGATACCCCACTCATTCTCAACAAGTTTTCCCTGTATACACGGAGAGTTTTCCTGTATAACCTGTTAAAAATCTTTCAAAAATCTATTACTCATCGGTATGCAGTATTGTATTTATAATTGGCGTTATATCATTTCCTTTCTTTAAACAGCTGCAATAATACCATATTACCATACACAGCCTGTGCCTGCTTCTGCACTGCTGCCTCTCCCCTCATCAGAAAAAAACAATTATTTAACACAGAACGGCAAAGGTTCCCGAATTACTGAACCTTTGCCGTTTTAATGTCAGAAATAAACCTCATATCCTTTCAAAAAGCACCATAATATGGTAAAATATTCCGATAATCACGCCCGGA # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:0, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCTTCCGCAAGGAAGGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.20,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 11436-12270 **** Predicted by CRISPRDetect 2.4 *** >NZ_GG667622.1 Hungatella hathewayi DSM 13479 Scfld15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 11436 33 100.0 33 ................................. ATCTAAGGCATTTTTTATAAAGAAATTTATTTC 11502 33 100.0 34 ................................. CGATATTAAGTTTTTGCAGTCACTATGCAAGGCA 11569 33 100.0 34 ................................. TAATACTTCTCTCGTACACAGTACACATAATCCC 11636 33 100.0 34 ................................. CTGCAAAGGAAACGCCGTGGAGTCCGTCCATAGC 11703 33 100.0 34 ................................. ACCTGAATATTGACTATGGTTTGTATGGGGTTGT 11770 33 100.0 35 ................................. ACCTGTTCTCCATAGCCAATCAGCAGGACTACATT 11838 33 100.0 33 ................................. TTTATATGGCCCTTCATAATATGCAGATATATC 11904 33 100.0 35 ................................. TGCTCCATGCGCAACTTCCGGCGGGTGAATATGTC 11972 33 100.0 34 ................................. CGTGTGACCGTTGTCCATGCCGCTTCCCCCTGCT 12039 33 100.0 33 ................................. TGTGAAAAGTCAATCTTGCCTGTTGACTTATTT 12105 33 100.0 33 ................................. TATGTATCTGCGAATGGAAGCAATATAATGGAA 12171 33 100.0 34 ................................. TATCCGGGCGAAGTCGGACGCCTCGGGGTTCACG 12238 33 93.9 0 .......................A........C | ========== ====== ====== ====== ================================= =================================== ================== 13 33 99.5 34 GAGTCATCTCCTGCGGGAGATGTGGATTGAAAT # Left flank : TATTTTACAGTGTCTTTTTATGACAAGGAGTATAAAAAAGCACTGAACATCTGCGGAACACGGTCCGGACGTGACTGCGATAAGGCGGCAGAAGCCGGGCTGACCCCTTATTTTATTGATGGTACTACGGCCTTTGAAGAAGCAAATATGATTTTTGTCTGCCGGAAGCTATACTGTGATCCAATGCCCGGTGATAATTTCCTGGATAAGGAAAATGATGAGAAATGGTATCCGGATAAAGATTATCATACAATGTACATTTCGGAGATTGTGAAGGTGCTTGTGAAAGACTGAGAAGAAAATTAGCTGTGAGGAGTGGCTGCACGGGGCGGTAGCTGGTGCGAACCTTAAGTGAACATAGAATTACTGGGAGGTTCGCACTGGAAATTGGGGGGAAAATGGGGGGAATATGGAGTTGATGATTGATTTTTAAAGGGATTGTTGTACAATATAGTTAAGGATGTGAGGGGAGTTGGGGAGGGAGATTGGGGAAAATTGCT # Right flank : CCATATGGAAAATCATACTAATGTCAACCAATCTGTAAAAAAATGTCCCACAAACACTTTGATTTCCACAAAAAAGGACCTTCAGATCACCATATCCGAAGGTCCTTTTTTATCCAATTTCCTTTTTCTACCTAATCACCAAGATAATAAAATGCTGTAAAATACCCTTTCTCATTATAGTAAAGATCATTACCGTATACGGTATATTCAGCCGAAGCCTCCTCTTTGCCTTCTTCAACCGGTTCTCCGGCGTATATTTTCTTCTGAGTTTTAGATGCTTCCGCAAGGTTGGTATAGGTGCCTGTGACGGCGCCTTTGAGGATATAAATATTGCCCTCATAGACCGTTTTCATAATCGTATCGTCACTGTCCTCCCACAGGGTATACGTTCCGTTCTCTAAATCCGCGGTGATCGCCGCCTCATTGCCGTAAGTGGAGGGATCCATACCTTTGTCATACGTCAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTCATCTCCTGCGGGAGATGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.80,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA //