Array 1 19383-21510 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJGQH010000026.1 Xanthomonas melonis strain NCPPB 3434 scf_16753_26.contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 19383 28 100.0 32 ............................ AGGAAAGGACATGACCGACACCAACACGAAGC 19443 28 100.0 32 ............................ TCGGCGCGCAGCCGCTGTTCGTGCCGGCAGAC 19503 28 100.0 32 ............................ AGAAGAAGCAGGGCCGTCTCGTACCGCTCCAC 19563 28 100.0 32 ............................ ATAAAGCCGCAGCGCAGGTGATGCGGATTACA 19623 28 100.0 32 ............................ AGATCCGTCGCGGTGACATCGCCGGTAGTGAC 19683 28 100.0 32 ............................ TTCCGCGCGTTCCTTCGGAGCCGTGGAGTGCA 19743 28 100.0 32 ............................ TTGAGGACATTTGTTCTCAGGCTTGCAAACGC 19803 28 100.0 32 ............................ ACGAAGATCGGAAACGCGATGTAGTACCAGGG 19863 28 100.0 32 ............................ TTGGACGGCGGAGCCGCGCCGGGCGCCGTCGC 19923 28 100.0 32 ............................ TGGAGAATGGTCATGAGTGAGACGAAGTGGAC 19983 28 100.0 32 ............................ GGGAAGGCCTAATTCAGTGATCGACTTAATTC 20043 28 100.0 32 ............................ ATCCAGGACGGCGACGCCATCCTGTTCGACAC 20103 28 100.0 32 ............................ CAGCGGCTGCTCCGGCTGCGCGATGTGCTTGA 20163 28 100.0 32 ............................ TGCGTAAAGGCACGATTACCGGAGCACGTCTG 20223 28 100.0 32 ............................ ACGGCCACCAGAGCCAGCACCCCGACCACCGC 20283 28 100.0 32 ............................ TGGCGCCGCCAGAGCTTGGAGTCATCCGTGAC 20343 28 100.0 32 ............................ AACAACACAGGCCACCGACATGCCCTTCGCCA 20403 28 100.0 32 ............................ GCGGCCAGGGAACAGCGGGCCGGCGCCGTTGA 20463 28 100.0 32 ............................ TTCGCTCAGGACCAGCGCCGGTGCGGCCATAG 20523 28 100.0 32 ............................ CATCGGTCTTGAGCGTGACGGCGTACGGACCA 20583 28 100.0 32 ............................ TGCTCGAGCACAAGGAACAGGCGGCGCATCTC 20643 28 100.0 32 ............................ TACCAGATCACCGCACTCGAACATGTGCCACA 20703 28 100.0 32 ............................ ACACGCGGGCTGGTCATTGCGCGGGCAAGCAC 20763 28 100.0 32 ............................ CGCAACGCAGGCGCCGGACGCATCGGCATCGC 20823 28 100.0 32 ............................ AGCGTCCGGCCTGCCAGCTTGGCCTGCTGCAC 20883 28 100.0 32 ............................ TTCACCGGGCGCAGCTTGATGGTCTTGCTGTT 20943 28 100.0 32 ............................ TCACCGGGTCGCGTCCAGCTGCGTCCAGCCAC 21003 28 100.0 32 ............................ TGACCATGAGCAAGCCCACACTGGATTTCAAG 21063 28 100.0 32 ............................ GGGCAAACCCCGCTCGAGCACCACTATGGCTG 21123 28 100.0 32 ............................ GATACCGCGTATTGGTCCTACATCGGGCAGTA 21183 28 100.0 32 ............................ TCCCACTGCTCGATGCGATCGATGTGATCCGG 21243 28 100.0 32 ............................ TCTGTGGTCTGGTCGATCGCCTGCTGCATTTC 21303 28 100.0 32 ............................ ACGTCCAGGGCCAGCCGATCATCCGCCTGCGC 21363 28 100.0 32 ............................ TGCACCGCGATGCGCACACGGATCGCCGAAAG 21423 28 100.0 32 ............................ GATGCGCTGCGCTTGGGCGCGCGACGTGCAGC 21483 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 36 28 100.0 32 GTTCACTGCCGCGTAGGCAGCTCAGAAA # Left flank : CATTGCAGACATTGATGGCCCCGCCCTGGCTGCAAGGCATGCAGGATCATTTGACTGTATCGGACATCTACCCCACCCCCGCTGGCGTGCAGCATCGGCGAGTGATGCGGGTACAGGCCAAGAGCAGCCCATCACGCCTACGCCGCAGGGCGATGCGACGCCACGGACTGGATGCAGAAGCGGCGCTGCAACGCATCCCGGATTCGGCCTCCGAACGATTGCAGCTGCCCTTCGTGGTTCTGGGTAGCCGCAGCACAGGGCAACCCTCGTTCCCGCTCTTCATTCGCCAGGGTCCATTGGCGTCCACTCCAGTGCCGGGCACCTTCAACAGCTACGGCCTGAGCCAGGACGCAACCGTTCCCTGGTTCTGACCCTTTTTTCCTGCGCAGAACACAGCTCTTAAGAATCAACAACTTGGCGGGCCTCCTAAGATAAGGGGGCCCGTTTCTTTTTTGGGGATCTTCCCAGTACCATCAACAGTTTGCGTCATTTTTTGTCTT # Right flank : ACCTACATGTCAACGCCGATTTAAATCTGACCCACTTTTCGTTGGATCGCCGAAGTAAATCTGACCCACCCGGGGTCTTGTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 109-1036 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJGQH010000018.1 Xanthomonas melonis strain NCPPB 3434 scf_16753_18.contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 109 28 100.0 32 ............................ TGCTTGACCGCCTGGCGCAGCTTGTTGAACTC 169 28 100.0 32 ............................ AAGTCCTTCGCCGCCCAGGCCAAGTTCTCAGC 229 28 100.0 32 ............................ GCAACGTAAACAGGTTGAAGATCACGATCGAT 289 28 100.0 32 ............................ ACCTGGTCCACTCAGCCCGGCTACTCCGTTCA 349 28 100.0 32 ............................ TGGACCAGTAAGGTGCATAGCGATCGAAGTGA 409 28 100.0 32 ............................ CAGACACGGCGACAGCGCATATGGCGGATGCG 469 28 100.0 32 ............................ ACGGCTTGGCAGGCGCGGAGCTGGTCGTCGGC 529 28 100.0 32 ............................ GCCCAGCATCTGGAATGGCTCCGCATACGCAA 589 28 100.0 32 ............................ ACGTCGCATTCGCTGAGCCTGCTTCGCCCCAC 649 28 100.0 32 ............................ GAAAGGCCAGGCACTCGGTGCCGCCGCATCGC 709 28 100.0 32 ............................ GTACAACCCGGATCCGCAAGCGCCTGGGATTC 769 28 100.0 32 ............................ AATGACCCTGCGCCTGTGCCGTCCGGCTGCGA 829 28 100.0 32 ............................ ATATGCGCTGTCGCCGTGTCTGGGCAGATGAC 889 28 100.0 32 ............................ TCAACACGGGATGACAGAGATGATGTACCTGC 949 28 100.0 32 ............................ AATCAGCAGCTGCCCCATGTACGGGATCACAG 1009 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 16 28 100.0 32 GTTCACTGCCGCGTAGGCAGCTCAGAAA # Left flank : TCAAAAGGCCACCATCGTGGCCCAGGTGGGTCACTTTTACTTCGGCGCTGTGGGTCAGTTTTACATCGGCGCTAACACCTACAGCGTGCGAGCGCAGATCACCAGCGCG # Right flank : ATTTGGGATACACCACGGCCGCTGGCCTCTAGAGCGTGTTATGAACTTTGGAGGAGCGTGGCCGCATTGCCGAGCATGAGGATGGTGAAGACGACGAAGTGCAGGCCAGCTAGTGTTTCTGGCAGGCGCTCGTAATCGCGGGCCAAGCGCCGGAACCGATTGAGCCAGCCGAAGCTTCGCTCCACTACCCAGCGACGGGGCAGCAGCACGAAGCCCTTCTTTGCCTCCGGCAGCTTCACCACATGCAGCTCGATCCCTTCTTCCCGGGCCGCTTCAGCCGCTTCCTGCCCCGTGTAGCCCTGATCGACGAAGGCGAGCTTCACCGTCTCTCCCGTGACGTGTTGAACCTCCTGCGCAAGCGATCGCACCTGGGCACGTTCCTGCTCGTTGGCAGGCGTGACCTGTACGGCCAGCAGGTGGCCCAACGTATCCACTGCCATGTGCACCTTGCTGCCCTTCTTACGCTTATAGCCATCGTAGCCGGCCCGCGGTCCGCTCTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1928-4417 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJGQH010000018.1 Xanthomonas melonis strain NCPPB 3434 scf_16753_18.contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1928 28 100.0 32 ............................ CAGCTGGCCTAGATAGCCCAGCGCATTGCCGG 1988 28 100.0 32 ............................ TGTTCCGCGCCCTGGTGTGGCCGTATCTGTTC 2048 28 100.0 32 ............................ ACCGGCGGGTTCCCTGGAAAGGATCATGACTA 2108 28 100.0 32 ............................ ATCCGGCGAGGAGGTTTATCTGACGCGTCAGA 2168 28 100.0 32 ............................ TTAGGGTCTTGCAGCTGTTTCATGAAGAACTC 2228 28 100.0 32 ............................ AAGCGCGCAACCAGGCGCACCTCGGCCGGCAA 2288 28 100.0 32 ............................ GTCATGCGCCGCGTCTGGATGCCGAGATTGAC 2348 28 100.0 32 ............................ CAGATACTCTTGCCGCCTTCTTCATACACCTC 2408 28 100.0 32 ............................ AAGTGCGGGCCGAACGCGAGGCAGCGGCGGGA 2468 28 100.0 32 ............................ AGCGTGATGCGCTGGACTTCATCGAGGACTGG 2528 28 100.0 32 ............................ GAGCCGATGGCACCCGCGTGCTGTCGATCCAC 2588 28 100.0 32 ............................ CGGAGCAGTTCAAGGTGATCGGCGTATTCCTG 2648 28 100.0 32 ............................ AACAGTTCGCCAGCGATCAGGGCGCCCCGCCC 2708 28 100.0 32 ............................ ACAACAGGCGACGGTAGTAGCGAGCGGTAACA 2768 28 100.0 32 ............................ AATTAACCGGGACAAATAAGACGACTTATCTT 2828 28 100.0 32 ............................ GGCACGGGCAACTGCCTAAGTCATGTCGACCT 2888 28 100.0 32 ............................ AATCGATAGATTGGAAATCAGCACTGTCGGGA 2948 28 100.0 33 ............................ GAGCAGGCATACGCCGATCACCTTGAACTGCTC 3009 28 100.0 33 ............................ AAGGGCCGCGCCGCGGTCCTCGACCTGGAACGT 3070 28 100.0 32 ............................ TTTGCGCTTCCGCGCCTTCGGCAACGATGATC 3130 28 100.0 32 ............................ TGTTTGGCACACGTGGCACACATCAGAACCGC 3190 28 100.0 32 ............................ TGACTCGTGTCGATATCGCTATCGATGACCAC 3250 28 100.0 32 ............................ GCAGGGATTTGACCCTCACCAGCTCCCAGCGC 3310 28 100.0 32 ............................ GTGTCGCGACTGGTTGCTGTGCGCTGGCTCGC 3370 28 100.0 32 ............................ AAGCGCTGTAGACCTCGCCATTGTGCAGCGTG 3430 28 100.0 32 ............................ GTCCGCGCCGGTGAGTTCGACCCCCTTGCGCT 3490 28 100.0 32 ............................ ATCCGCAACAACAACTACACGGACGGCGAAGG 3550 28 96.4 32 ...........................G CCGCAGGCACATGGATAGGATTGCACAGGCTG 3610 28 96.4 32 ...........................G TGTTTGGTGGGGAATGCCCAGCCAAGGCTCAC 3670 28 96.4 32 ...........................G ACCCAGCGCGGTGTGCCTTGGTACTACTACGC 3730 28 96.4 32 ...........................G TTGCGCACGTTGATGCCGACACGCTGGGTGTC 3790 28 96.4 32 ...........................G AGCCACACCGCCACCGAATGCACCTGCAGCGG 3850 28 96.4 32 ...........................G GGTCAGTCCGGGCCAGTAGATCATCGATAAAA 3910 28 96.4 32 ...........................G CTGCAGCACCGCGCGCAAGGTGCCCTGGGTGC 3970 28 96.4 32 ...........................G GAGTGCCACGGCGATGATGCCAGTGACAAGGG 4030 28 100.0 32 ............................ AAGGCGAAGGCGGTGCTCGAGGTGATGGGCAT 4090 28 100.0 32 ............................ GATGGCGCGGCGGTGCGGGGCGAGCAGGTCCA 4150 28 100.0 32 ............................ TCTACAGGCTGCGCGATCAGCGTCGGTGCCTG 4210 28 100.0 32 ............................ AATCATCGGGCGCAGGCTCCACCCCGGCCAGG 4270 28 100.0 32 ............................ TTGCACTGTTCCGACCAGCCCAGGCGGTAGGT 4330 28 100.0 32 ............................ TTGGCCAGCGCCGCACTGCCGCGCACCGTTGC 4390 28 92.9 0 ...........T...............C | ========== ====== ====== ====== ============================ ================================= ================== 42 28 99.1 32 GTTCACTGCCGCGTAGGCAGCTCAGAAA # Left flank : AGGCGTGACCTGTACGGCCAGCAGGTGGCCCAACGTATCCACTGCCATGTGCACCTTGCTGCCCTTCTTACGCTTATAGCCATCGTAGCCGGCCCGCGGTCCGCTCTCGCAGGTGGACTGCAAGGTGCGGCCATCCAGGATCACGGCACTAGGCTGACCTTGCTTGCCCTGCGCCACGCGCAGCACCGAGCGCAGATCGCTGACCATTGCCTCGAAACAGCCGGCCTGCAGCCATCTTTGGGTCTGCTGGTAGACCGCCTCCCACGGCGGGAATTCATGGGGAATCAAGCGCCACTGTGCCCCAGCACGCGCCATCCAGCGCAGCGCGTTGAACATCACGCGCAGGTCGTACTTGCGCTGCCGCGCCTGCGGATCCATCAGCGTCAGGTAGGGCGCGGCGAAGGCCCATTCTTCATCGGAAACGTCAGTGGGATACGGGCGTGCTGGCTTCATCCCGATACGATAGCCGCGTCTCCAGGAAGTTCATAACACGCTCTAGG # Right flank : CTGCGGGTTGTCGACTTTGCTGTCGCCGCCGATTCAAGTCTGCCCCATTCCGGCTGGATCGCCGAAGTAAATCTGACCCTCCCGGGTTCAATCGCCTGGGCATACCTGCGGTGTCGCATGGCACTGTCGATGCAGTGCATACCGGCTGCGCAACTGCGGCGTGCGATGCGGCACTACAGGCAGACGATGGGTCGTGCTGCGGCGCTGCCGAATACCCATCACTCGCGTCCGTAAACCCCCAGAAACATCGCCACCGCCGATTCGGCCACCTGTGCCTGTTGCTCGGCCGACAAGGGGGGCTGGCCGAAGGCCAGCTGCGGCCAGAATGCGAATCCCTTGATCAGCGATTGCAGCTGTTGCGAGGCGAATTCCGCGTCCATCGGCGCCAAGCGGCCGTCGGCCAGTGCCGCGCGCAGCCAGGTGGTGGTGCCTTCTTCCTTGCTGCCCAGTTGCGACAGCAGTGCGCGCGCGCGTTCGGGCGAGTGGATGCCTTCGGCGAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //