Array 1 4761-192 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXHE01000262.1 Xanthomonas oryzae pv. oryzae strain IXO884 contig_262, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 4760 31 100.0 34 ............................... AAACCGACGCCGCTGATGCAGTTTCTGACGGAGC 4695 31 100.0 37 ............................... GACGGTGATGATCAAGGACGAGTTTGCAACAGTGAGA 4627 31 100.0 34 ............................... CAGCACCATGACGAACAAGTCGCCCACGAAATCG 4562 31 100.0 35 ............................... CACGCCCGGTGATGGTGATGGCCACGGTGATGACC 4496 31 100.0 34 ............................... CCTTGCAGCTGGAAGTAGCTGCTGCATTACATAG 4431 31 100.0 37 ............................... TGGATGCTGGAAACCTCAACCTCAGTGCCCTTGATGG 4363 31 100.0 35 ............................... GTGAACAACGCCGCGCCCATGAAGCGATGAATAAA 4297 31 100.0 35 ............................... AGCAGACCAATACGCCGTTGTCGGGGTTGGATAGT 4231 31 100.0 34 ............................... CCAGCCCCTCCCTTATAATCAGGCGAACGAGCCC 4166 31 100.0 36 ............................... TCAGCATGACTCTTAGCCCGTGGTTGCGGCGCATTG 4099 31 100.0 33 ............................... CAACGCTACCGCTGCCACATGCGCACTCGCAAC 4035 31 100.0 35 ............................... AGGGTCCTGTTGTTGTATTCCGGGATCCCTGGGTA 3969 31 100.0 38 ............................... GTTCACCGCCATTGATCTTGCTGCCCGTGAACTTCACG 3900 31 100.0 34 ............................... TCGGTCTCGGTGCGAATCCAATCCGCACCGAGAC 3835 31 100.0 34 ............................... TGGTCCTGTGCCTCTGACTTAATGGCGGACAACC 3770 31 100.0 35 ............................... GTCCGACCACGTGACACCATCGACCGTGTGGGGAA 3704 31 100.0 37 ............................... GCCGCAGACCGGGCCCGGCATGCGCCTGGCTCAGGAC 3636 31 100.0 36 ............................... TTTCCAAGCGCCCTGACAATAGTCAGAGTTTGATCC 3569 31 100.0 34 ............................... CAGTCTTTTATCCTGCACTGTGAGGCAAATGACT 3504 31 100.0 35 ............................... TCGTACCACACCCAAGCCCCGTCGGTGTCCATCGC 3438 31 100.0 33 ............................... AGTGTCGTACCAGTACCACACGCCGTTATAATC 3374 31 100.0 33 ............................... ATGCGCCCCTGCGTGCATGCCTATTGCCACCAG 3310 31 100.0 35 ............................... ATGGTGTGGGCGATGACGTGGGTGGTGTCCGTCTT 3244 31 100.0 35 ............................... TTCCGCGGCGTAATCACCTGGTCGGCGATTAACGC 3178 31 100.0 35 ............................... AGCATCGCGCTACGTGTCTTTGCCCTACGATAACC 3112 31 100.0 34 ............................... GTCCATCGGGTGGTAGTGACCCTGATCGTAGCGT 3047 31 100.0 34 ............................... CACCGCCGCCGTCTCGAAGACGTTATCGGCGGCG 2982 31 100.0 35 ............................... CTGTCGGGGCGTGACTTGGAGAGCACCGCCGCAAG 2916 31 100.0 33 ............................... TAACCATGAATATCATGCCCGTAATCGCGTCTG 2852 31 100.0 35 ............................... CCGCCGACCCTGGGTCAGTTCGCCCTGCTTGAGGG 2786 31 100.0 37 ............................... AGGAAACGGTCGCCATTAGGCAGGCTGCGGCGCAGCA 2718 31 100.0 35 ............................... TCTGACGCAACAGCGCGGCGATGTCGCCGTGCACA 2652 31 100.0 33 ............................... GGCGGCCTCGATATCAACCCCGAATCCGCGCAT 2588 31 100.0 35 ............................... ACACCGTCGTCGGGCGCCCTGTCGGCGATATGCTC 2522 31 100.0 34 ............................... CGATGGTAGTGGTGTTAGTTGTGACGATGGATGC 2457 31 100.0 35 ............................... AGCAATTACACTGTACACAGTCTTTGCACCAGCAT 2391 31 100.0 37 ............................... ACCAGTAGCCAGGGCAGTTCCACCTGAAGGGGCTGTG 2323 31 100.0 35 ............................... TAGATCCACACCAACAACCAAACTGAGGTCACCGC 2257 31 100.0 36 ............................... AACAAAGAGGCGTCGGCTGTATCGGCTGCTATTGGT 2190 31 100.0 34 ............................... AAAGTTAAAATCTGGACAGATCGTGAGGCAGATG 2125 31 100.0 33 ............................... AACGATCCGATCACCGCTCCGCAAGCCACGATC 2061 31 100.0 35 ............................... GGGGTAGATGGCGGGGTCGGACAGGTCCTGATACT 1995 31 100.0 37 ............................... GGTACGGATGCAGCAAATTCTGTGCGCTTGAAGTAAC 1927 31 100.0 35 ............................... ATGGTTGCGCGGGCGGAACGGTCATTCCACCGCCC 1861 31 100.0 35 ............................... GAGGCTGAGGGTAACATAACTGCGAACTCTCAGAA 1795 31 100.0 34 ............................... AGAGCAGCCTTGATGTTCATCGTGGCCCGCGCCG 1730 31 100.0 35 ............................... TTGTAAAGCTCAGACATGGGGGCACCCTCTCCGCC 1664 31 100.0 35 ............................... TGGTTAGATAGAGTTAATTTTCAGTTGGATCGCCA 1598 31 100.0 33 ............................... TTGCTGAGCAATCTCTCTCAGCCTCTTGGCCTT 1534 31 100.0 34 ............................... TCCTCTCCATCTAAGTCAATCCAACTTGTTGGTG 1469 31 100.0 34 ............................... AAGATTGGTAATAATGGGCAGGTTGTGGACTTCA 1404 31 100.0 34 ............................... TTGGCAGCAAACGCCCCTGACACTTTAGATGGTG 1339 31 100.0 34 ............................... ACCAGCTTCGGCCAGACCCTGGGCGTCAGCCAGT 1274 31 100.0 36 ............................... ACCAAAGATCGCGCCGACCCCAATAAGCCGGTGGCC 1207 31 100.0 35 ............................... AAGATTGGACCCTCGCTGGTGATGATCGGCGCGGC 1141 31 100.0 35 ............................... ATTTCATGAGCGCGCATGCGCAGATCAGCAAGCAA 1075 31 100.0 36 ............................... GTGATGGTGCTGGAACAGGCGTTGTCGGCTGTGCTG 1008 31 100.0 35 ............................... TTGAGATAAGCGGCGATCTGGTCGGCCGTGTAACC 942 31 100.0 35 ............................... TAGATCGCCCACAAAGGACCGTGGATATGTGGACA 876 31 100.0 34 ............................... TTTCGCGGCGTGATCACCTGGTCGGCGATTAACG 811 31 100.0 33 ............................... TATACGGAGCGTGGAGGGTGATCTTAAGGTTGC 747 31 100.0 34 ............................... GTTCTATACGCGGAACGGCGCGGGCACGCTGCTG 682 31 100.0 34 ............................... GTGGCCCACGTCGAGTCGCAGGCGAAACGACCGC 617 31 100.0 35 ............................... AAGCTGACTAGCTCGAAGAGCCAAGCGGCGATGAC 551 31 100.0 35 ............................... ACGTTCAAGCCGCTCGCCCTGGGCGACCGGTGGGA 485 31 100.0 35 ............................... CCGACCTCAAGGCGCGTTCCTCCGGTTCGATCCAA 419 31 100.0 36 ............................... ACGTAGAACGAGCGCTTGTTATAGCGCTCGCGCCAC 352 31 100.0 34 ............................... CTGCACATACTCAATCAGGGCGCTGTCGGTGCGA 287 31 100.0 34 ............................... CGCGACGGGCTGGAGCTGGTAACCCCGTCGCAGA 222 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ====================================== ================== 70 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACGCCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATTGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATCACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGG # Right flank : CATGACGCGTCAGCATTACTCATAAGTCAGAAATATAGGCGACACTTGGATGCGTGAAGAACGAGCGCACCAATTCTGGTCGAGCTGCAATGTCGGACAACTGATCATGCACCCGATCGGCCAGCTTCTCGCCACTGCGCAGCGGGCTGCGCGCTACGCCCGTGCGCTTGGTGTAGCTCCACACCAACTCGT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //