Array 1 2161-1954 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFSE010000019.1 Gilliamella sp. W8128 NODE_19_length_4396_cov_305.320111, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2160 28 100.0 32 ............................ AACCCGGCAATTCGACGTTGCGAATTAATGAT 2100 28 100.0 32 ............................ TATAAAAGATAAATTTTCTTTAATAAAAATTG 2040 28 100.0 32 ............................ CATTCAATAGCAGCTTCTCCATTTTCCAATTT 1980 27 92.9 0 .....................A-..... | ========== ====== ====== ====== ============================ ================================ ================== 4 28 98.2 32 GTTCACTACCGTGTAGGTAGTTTAGAAA # Left flank : AATTAGCTTGCTATAAACATAAGAGTTTATTTTGGCAAATAAGTTTGGTGTATTTAATTTAGCGACATTCGCAACGTGCTGACAACAGAGTGAGGTTAGCATAGCAAACAGGGATGTTTGCCAAGGCGGTGCTTTGTCAGGAACAAATCACAGCCGGTGCGTTAAGACCGAACGAAGACGGAAGGCAGTCACATCGTGACCACTTGCGTGGTCGCCGCGGGAGATTGTAAAGAGGGTTCGCGCCAACCCTCTTAACTCGGACGTAATCACCGTATAGAAACAACCACAAAACAACAAACGTCCGAAACTCAAAGAATAAAAAATTTTGAGGAGAGGGGTTTTTGAAACTTAAATTCCTACTTATTGCTAACCCTTTTTTTTGACTTAAAATAAAATTTTTAAAAATCAATATGTTGAAAAACCGCTTAAAAAAAGGGTTTCTAATAGTAAAATTGCGCTTTGCCTTTTTACCAACTGCATTTATAGTATATTGAATTCTA # Right flank : TATATAAGTGGCGGTATAATCAAGAAATACACTGCTTATTGAGTAGGTTAAAAATGGTGATTTTTAAAGAGGGAATAAAGGGGATATTATTTCTAATAAACAACAAATAACCGATGCTGTTTTCGGGCTAGCAGTATTCTTCTTTACAAAAGTTAACAATTAAACCATCAAAAAAAGTTGCATGGTTTTTTGCAATCACTATACTTTTATAGCATATTTATACGAATGGATAAATTTTATGCCATTAGGCTTAAAATTTTAAATAAATCATAAAATTGGATTGACAAGGATATCTGATATGGATTATAATTTTCAACACACAACACACAACACACAACCTGCCCAACCTATAATTTCACCTTTCTAAAGTTAAGCTCACACCGTTTATTATTTCACCGCAGTTTATTATTTCGACAATTTCCAAAATTTCCGAAATTCCGGCAAAATTTTTCAAAATTTCTTGGTTTCGCCTGTTTATCTCGGCCGATGGTTTTGGTATT # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGTGTAGGTAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: R [matched GTTCACTACCGTGTAGGTAGTTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1675-1882 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFSE010000010.1 Gilliamella sp. W8128 NODE_10_length_60544_cov_232.257695, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1675 28 100.0 32 ............................ GATGGTAGTGTTTCTCAATTACGAGATCATCA 1735 28 100.0 32 ............................ AAAAATGCTCACCGCCAAACCTATAAAATGTC 1795 28 100.0 32 ............................ TCGAGTTACAACTCCTCAAATTGCAGAACACG 1855 28 71.4 0 .......A....G....CG....TTTT. | ========== ====== ====== ====== ============================ ================================ ================== 4 28 92.8 32 GTTCACTGCCGTATAGGTAGTTTAGAAA # Left flank : TTAGGTATTGAAGCTAAGGATAAGAAAAATAACGTTAGGGTGATAAAAACGATTTTGTGGTGCGACATTGGCAACGTGCTGACAACTGAGAGAGGTTAGCATGGCAAACAGGGATGTTTGCCAAGGCGGTGCTTTGTCAGGAACAAATCACAGCCGGTGCGTTAAAAGCGAACGAAGGCGGAAGGCAGTCACGCAGTGACCACTTGCGTGGTCGCCGCGGGAGATGGTAAAGAGGGTTCGCGGCAACCCTCTTAACTCGGACGTAATCACCATATAGAAACAACCGTAAAACAACAAACGTCCGAAACTCAAAGAATAAAAAAATTTGAGGAGAGGGGTTTTTGAAACTTAAATTCCTACTTATTGCTAACCCTTTTTTTTAACTTAAAATAAAATAATTAAAAATCAACACTTTGAAAAATGGCTCAAAAAAAGGGTTTTTATTGGTAAAAATGGACTTTGCCTTTTTGCCAACTGCATTTATAGTATACTGGATTCTA # Right flank : ATGCCTGTCATACGACCACTCAGCAGATGAAGTAACCAAACTTTTACAAAGAGCTAAAATTATCATTGATGTACAAAAAAGCAACGATAAGCTACGTGAAAATTGTAGGTAAGGATTATTTTAAAGATGATTATGAGAATGGAAATTTGTCTCAATATTGAGTGACCTTGTTTGTTGATTATGAAGCTAAAAATGATTTTGGTGTTGATTTAAAAAACACTTCAATATGTTATTTTTATTCTATTTTAATAAGAAATGATTATTTTATGTTCCCAGATTTTGATAAAATGGCGATCTCAAATAAAATATATAGTTATATTGATTTAATGGCATCAATAGAACATTTTCATTCTTCTTTATTTGATATTGGAAAAATAAGTATTGTCGATAAAATATCGTACCAGATTGATAAAAATAATTTCCTCTATTATGAGAATGATTGAATTAATAACTTTTATTGCACTTGGCTAACAAATTTTATACTATCTATCAAAATTATT # Questionable array : NO Score: 5.50 # Score Detail : 1:0, 2:3, 3:0, 4:0.64, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGTAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGTAGTTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.20,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 7287-6893 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFSE010000003.1 Gilliamella sp. W8128 NODE_3_length_295530_cov_268.683857, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 7286 29 100.0 32 ............................. TTCTTCCATGTCAGTGTCGGCATCATAATTAA 7225 29 100.0 32 ............................. TGACAGCCGAATCGATGCAAACAGCTATGGAT 7164 29 100.0 32 ............................. CTGATTAGCTTTTGGTTCTATACTGATATTAT 7103 29 100.0 32 ............................. GGCGTAAACTTGTTCGCCCTTTGTTAACTCAT 7042 29 100.0 32 ............................. ATTCTATGGCTCTAATTACAATAAAGATAAAC 6981 29 100.0 32 ............................. TAATGAGTGGCGGCGGGATAGGTAAAGCAATC 6920 28 86.2 0 ......................-.C..GA | ========== ====== ====== ====== ============================= ================================ ================== 7 29 98.0 32 GTGTTCCCTATACACATAGGGATAAACCG # Left flank : TTCAACGATGATGGTGAACCAACCAGCACAGCCGGCCGCCCTATTCTATCTGCCATTGAAGGTCAAGATTGTGATCAGGTGGTGGTGGTGGTCACCCGCTACTTTGGTGGCATCAAATTAGGCACAGGCGGACTCATTCGGGCTTACGGTGGTTCGGCTAGTCATTGCTTACAACAAGCAGAATTAATCGAACTTATTGCTAGAACATCATTACAATTTCATTGCTATTACAATGAATGGCCAATTATTGAAAACCGCTTAAAAGAACTAGATGCAGTCATTGAACAACAAAATTTTGATGCTGAAGGTGTAACTGTCATTATTGCTATAACACAAGATAATGTAGTCATACTTAAAAAAAATATTAGCGATATTACTCGCGGTAGAGTGATTATCAAGACTTAAAACACCTGTGTAAATATCCATCCAAATACAGCAAAAAAATTGGTAGAAATTGTAGACTGCGTATTTTAATTATAAAACAAACGGTTATAATTAGA # Right flank : TTGCGTTCCCTGTGTGTACAGGAATTAACTTCAAATTCAAACAAACCACCTTCTGGCGGTTTTTTATTGCCCAGAATTCCTAAATAACTTACTATTGCCCAAAAAGGAGATGGCATGAAAAGAATTACTTTATTTGGGATAGCTTGTTTTGCTTTGTATGGTTGCGGTAACGATAGTGATGGGCAAAAGGTCACTGAGGAGATGTTACTTGGTGAGTGGGACTGCAAAGTTAGCTCGCAAGAAGCAGAATCAAGGAATGGTAAGTTACAAGATTTTGGTGATCCAGAGTTCGAGGAAAATAAATACATTTTTACCAAAAAAGATGGACAGCTTTTTGTAAGTTTATCTTTATATAAAGAAGATTTAATGCCTTTTAATCTAGAGGATATTTACAAAAGACCTGAGTATACGGAATATGATAGACAAAGAACTCAAAAGATTAAATACCTATCAAAAGATAGTTTTAGTCTAAACGGTACATATACAATCATCGATAAAAA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTATACACATAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: R [matched GTGTTCCCTATACACATAGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.30,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 253988-253840 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFSE010000005.1 Gilliamella sp. W8128 NODE_5_length_258635_cov_269.278739, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 253987 28 100.0 32 ............................ CTGACAGAGTCCGAATCTAAACGGCACAATGT 253927 28 100.0 32 ............................ ACGTACAAAAGTCGGGCATAAATGATAACAAT 253867 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 3 28 100.0 32 GTTCACTACCGTGTAGGTAGTTTAGAAA # Left flank : TTAGGTATTGAAGCTGAGGATAAGAAAAATAACGTTAGGGCGATAAAAAGCGATTTTGTGGCGCGACATTGGCAATGTGCTGACAACTGAGTAAGGTTAGCATGGCAAACAGGGATGTTTGCCAAGGCGGTGCTTTGTCAGGAACAAATCACAGCCGGTGCGTTAACAGCGAACGAAGGCGGAAGGCAGTCACATCGTGACCACTTGCGTGGTCGCCGCGGGAGATGGTAAAGAGGGTTCGCGCCAACCCTCTTAACTCGGACGTAATCACCGTATAGAAACAACCGCAAAACAACAAACGTCCGAAACTCAAACAACCAAAAATTTTGAGGAGAGGGGTTTTTGAACCTTAAATTCCTACTTATTGCTAACCCTTTTTTTTAACTTAAAATAAAATGATTGAAAATCAATATATTAAAAAATCACTTAAAAAAGGGTTTTTAATAGTAAAATTGCGCTTTGCCTTTTTGCCAACAACATTTATAGTATATCGGGTTCTA # Right flank : TATATAAGTGGCAGTATAGGTAACATCAAGTAGTACACTGCTTATTGAGTAGGTTAAAAATAGAATTTTAAAAGGGATTGATGAAATCTGTTTAATATTTATATCCTATGTTATACCCAAAAGTTGAAAAATACATTTTTAAAAATTAAAACTATATTTTAATGATATAACTTTATAATAATATTTACAAAATTTAACAATTAAACTATTAAATGCAGTTGCGTCGATTTTTTTCAGACACTATACTTTACAGATAATTTTAATCGCAATATTTGGTGGTGATTTAGTCGGTTAAGATGAAATAAAGTAAAATAAAACATGAGATTACTTGACAAAGGATGTTAAAATGCATTATAATTTACAACACCCAACACCCAACCTGCCCAACTTATAATTTAAATTCATCAAAGTTAAGCTCTCAATATTCATTTTTTGCTATAAGCGAGATCCCACGAAATTTTGCGCGATCCTTGCTTCAATCATTTTTGTCTCGGCAGATC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGTGTAGGTAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: R [matched GTTCACTACCGTGTAGGTAGTTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 214428-212810 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFSE010000004.1 Gilliamella sp. W8128 NODE_4_length_282543_cov_293.743480, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 214427 29 100.0 32 ............................. TCCCTAGCGTTATTTTCCTGTCTGAATTATTA 214366 29 100.0 32 ............................. GGAGCTGTTACCTCGTAGATCATACAATGCAA 214305 29 100.0 32 ............................. ATATCCCCTCTCCTCTAAAAAAATTACTACCA 214244 29 100.0 32 ............................. CGGCATATTTGTATGCGACTGACATTGCCTTA 214183 29 100.0 32 ............................. TAACGTATCGAGTTGCTTTATCATTGATTTGG 214122 29 100.0 32 ............................. CGGAGAACGTGATTATTTTGATAAAAATATGA 214061 29 100.0 32 ............................. GACTAGACTTTGCAACAGAGGAATGGGAGTAC 214000 29 100.0 32 ............................. AGAACTAAAGGCATCAGGTTATCACGTTGTTT 213939 29 100.0 32 ............................. AAAGCACCTAAAAGATTTGATGGAGTGTGGCT 213878 29 100.0 32 ............................. TGAATTTATGCCGAAACCTGCTGACCTGATCA 213817 29 100.0 32 ............................. GCAAAATGTATCATCACATCAACACCTAAAGG 213756 29 100.0 32 ............................. GGTTGTTCCTTCGCTTATAGCTTTATCTACAG 213695 29 100.0 32 ............................. CACCATATTTTTGGCATTATGCAACGGGTGCA 213634 29 100.0 33 ............................. GATCGATTTTAACCCGCAGGAGTTAGGATTGCC 213572 29 100.0 32 ............................. ATGCATTTAACGGATTAGTATTCACTAGTCAA 213511 29 100.0 32 ............................. GTAGCACACCTTTTGATGCAGGTATGTTCTAT 213450 29 100.0 32 ............................. TTGCGGGTGATACCGATGAACTAGGTTCTGTA 213389 29 100.0 33 ............................. AATATTTGGACGATTTTTTAGAACAAAACATGC 213327 29 100.0 32 ............................. AACAAGATTATTTAAATATGGATATTGGTATT 213266 29 100.0 32 ............................. GATGCGGGCTATCTATTTGAAAATGTTATTCC 213205 29 100.0 33 ............................. CGCAGTTAAAAGCCGCAACAGTGCGTAACACGG 213143 29 100.0 32 ............................. TAATTCGCAATAAAATCGGCAACAAAAACATT 213082 29 100.0 32 ............................. GCTTTAAATTGAGTGATAGAGCGCATAATCTC 213021 29 100.0 32 ............................. CTATGTACTATTCAAAAAATGGTACACCAATA 212960 29 100.0 32 ............................. TCATACAGATCACTAGTTTTTCTGGCATAAGA 212899 29 100.0 32 ............................. ACAGCATTATTATTAAAGCAAAGGAAATTAAG 212838 29 93.1 0 ..........................A.T | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.7 32 GAGTTCCCTGTAGGTACAGGGATATACCG # Left flank : CTTATCGAAGAAGTTTTATCTGCTGGTGGAATTGAACCGCCCCCTGCTCCAGATGATGCCCAACCACCAGCTATCCCAGAACCTCAATCTCTAGCTGACAGTGGCTTTAGGAGTCGCTAAAAATGAGTATGTGTGTTGTAGTAACTGAAAATGTCCCTCCAAGGTTACGAGGTCGTTTAGCAATTTGGTTACTTGAAATTAGAGCCGGGGTTTACATCGGTGATATATCAAGACCAATAAGAGAAATGCTATGGCAACAAATCACTAAACTTGCTGAGGAAGGCAATGTTGTCCTTGCTTGGGCGACTAATACTGAGTCAGGATTTGACTTTCAAACTTATGGTGCAAATAGAAGGGTTCCGGTAGATTTAGATGGACTAAGGTTGGTCTCTTTTTTACCTATTGAAAATCAATAGGTTAATGTTCTTTAAAAATTAGAAAAATTTGGTAGATTTTAACTAACTAAAAAATATTATATAAAACAAATATCTATATTTAGA # Right flank : TTATTAGCTAATAAAATTACATCCAAATGGTTTTAAATTATCTACCTTTATGTGAGTAGATGGTATACACTCCTCAATATTTTTTACAAGGCTCTAATGATAGCTATTTATAAAAATAAAAGTTAATAATCATATGTATAGATAATATGAAATAGAGGTTTTTTAGTTAAACTAAAATAATTATTAAAAATAGCGTACAATACTCAACATTAATCGTAAATTCATTATCAATCATTTAGGAATTTTGTATGACAGGTAAATTTATTGTCATCGAAGGTTTAGAAGGTGCAGGCAAAACAACAGCCATCAATACTGTTGCTCGTATTTTAAAACAACATCATATTTGTGATTTACAATTTACTCGCGAACCTGGCGGTACTCCAATTGCAGAAGCATTACGAAATATTATTAAAAATGGTTTAGATAATGAGCCGCTAACTGATAAAGCGGAATTGCTAATGCTTTATGCTGCTCGTATTCAATTGGTTGATAATGTAATT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCTGTAGGTACAGGGATATACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCTGTAGGTACAGGGATATACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [76.7-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 232455-232972 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFSE010000004.1 Gilliamella sp. W8128 NODE_4_length_282543_cov_293.743480, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 232455 29 100.0 32 ............................. CGTGTCGCTGGCAGAGTGACAGCCGTTTTTAA 232516 29 100.0 32 ............................. TCTCTCCTCGAGCAAATTCTTAACTGTTTTAT 232577 29 100.0 32 ............................. TTTGCTCTTTATAAGATAGCACAATATTGTGA 232638 29 100.0 32 ............................. AGATATCGCACACATGAAGGATATGTCTAAAA 232699 29 100.0 32 ............................. CGTGCCAACCGCCCACGTTTTGACGAGCGAAT 232760 29 96.6 33 ...............T............. CAGTTTGCACTAGACATGATCCGGGTTGGCTTT 232822 29 96.6 32 ...............T............. CCGATAATTCTTTCCCTGATTTTGTTGATGGT 232883 29 96.6 32 ...............T............. GTAAGTTTAGTGCGACCGTTCGTGGTGTTGGA 232944 29 89.7 0 ..............T.........C...T | ========== ====== ====== ====== ============================= ================================= ================== 9 29 97.7 32 GTGTTCCCTATACACATAGGGATAAACCG # Left flank : GGACAAAGTTCACAAGCTAAAAGTATTATATTGAATTTTAATAAATGCTATAGCCGTGAACAGTTCAATGGTGAATGGGATAAGGAAATTGAAGTTTCAACCCGTTTATCAAAAGATAATATTGATCTTTATTTAGCATATCAACAAGATGGAAAAGTTATTCCTTACTGTAGTAGTAACGAATACGCATGGGAACAAAGCCATGTTACAATTAGTGCATCTAAATGGGCTAGAGTTAAAAAAGCCGTCCCACAACTTGACCAACAGCATCTAGAAAAATTGAGACAACAAATACATAGACCAAATGCCATTATTGTGTTAATTGAGACAGAAAAAGAACCTTCTTTTTATTCCAAGGAATTAGGCTTTTATCTAAATTAATTTAAAGTTAAATATTAATAATTTTAACTGGCAATAAGTTGAGTGAATTTCATACAGAAAAAATCGGTAAAAAATTACTCCCTTATATTTCAATTATAAAACAATTAGTTATAATTAGG # Right flank : TTATTACTGGCTAATTCGTTAAAACTGCCTGGCTAGATTTGGGTGAGGATGGAATACTTTGATCATCTGCAAAAATCAGTAGTTCGCCGTCGCTATATCTAACGTTTTATGATTGATGGTGAGGTTAAGACAATGTTAGCTGTATTAGAGTGTTTAAATGAGCATAACTTAAAACCCAATCGCCGACACGTTGGATAGGCTGCGCGTGGGATTGGAGGTCCTGTCGGAGACTGCCCGCGAATACCTTTTAAATAGTATAGGTAAAAAAATGACTGGCGTAAATATTGAATTCAATGTACAAGATGCACTAGACGCACTAATCAACATAGAATTTGCTTTGCTCGATACACATTGTTTATTTAATCATATAAGTGAAACATTACTTGATATTCATGAAGTACGCTTTAATACACAGGAATCACCTGATGGTATACACCATGGCAAGCATTATCACCATGGTATCAAGAAAGTAAGCCAAAACAAAAAAATAAAATCTTAAC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTATACACATAGGGATAAACCG # Alternate repeat : GTGTTCCCTATACACTTAGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: F [matched GTGTTCCCTATACACATAGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.90,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 156003-156209 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFSE010000008.1 Gilliamella sp. W8128 NODE_8_length_158792_cov_244.346771, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 156003 28 100.0 32 ............................ GCAATTTTGATTAAAAATTCGAGATCAGACTC 156063 28 100.0 32 ............................ TCATGTTGTTTTACAACAGACAAATGTGGTTG 156123 28 92.9 32 .......G............T....... TACCCCCGAAAAATTATCTTGTAAATTGTTTT 156183 27 92.9 0 ....................-.A..... | ========== ====== ====== ====== ============================ ================================ ================== 4 28 96.4 33 GTTCACTACCGTGTAGGTAGCTTAGAAA # Left flank : CATAAGAGTTTATTTTGGCAAATAAGTTTGGTGTATTTAATTTAGCGACTTTCGCAATGTGCTTACAACTGAGTGAGGTTAGCATGGCAAACAGGGATGTTTGGCAAGGCTGTGTTTTGTCAGGAGCAAATCACAGCCGGTGCGTTAAGACCGAACGAAGGCGGAAGGCAGTCACATCGTGACCACTTGCGTGGTCGCCGCGGGAGATTGTAAAGAGGGTTCGCGCCAACCCTCTTAACTCGGACGTAACCGCCGTATAGAAACAACCACAAAACAACAAACGTCCGAAACTCAAACAACTAAAAAATAAAGAACTAAAAAATTTTGAGGAAAGGGGGTTTTTGAAACTTAAATTCCTACTTATTGCTAACCCTTTTTTTTAACTTAAAATAAAATAATTAAAAATCAATATGTTGAAAAATGGCTCAAAAAAAGGGTTTTTAATAGTAAAATTGCGCTTTGCCTTTTTGCCAACTGCATTTATAGTATATTGGATTCTA # Right flank : ATATATAAGTGGTGGCATGGGTAACATCAAGAAGTACACTGCTTATTGAGTAGGTTAAAAATGGTGATTTTTTAAGAGGGGATAAAGGGTATATTATTTCTAATAAACAGCAAATAATCGATGCTCTTTTCGAGCTATTAGTGTTCTTCTTTACAAATGTTAACAATTAAACAGTTAAAATAAGTTGCATCGAGTTTTTTCAATCACTATAATTTTTGAACTATATTTATACAAATGGATAGATTTTATACTTTTTAGTATAAAATTGTAAATAAATCATTAATTTAATTGACAGGAATGTCGGATATGTGTTATAATTTACAACACCAAACACCAAACACCAAACCTGCCCAACCCATAATTTAACCTTTCTAAAGTTAAGCTCACACCGTTTATTATTTAATCGCAGTTTATTTTTTCAACAAATTCGGCAAAATTTTTCAAAATTTCTTAATTTAGCCTTTTTATTTCGGCCGATGGTTTTTGTATTAACCTTGGTT # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGTGTAGGTAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: F [matched GTTCACTACCGTGTAGGTAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //