Array 1 4389498-4393425 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP017934.1 Klebsiella pneumoniae strain CAV1016 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4389498 29 100.0 30 ............................. CTCACGCTGATACCTCGGAAAAAGACGGGC 4389557 29 96.6 32 .G........................... GCGGGCTGGGTTTTGTCGACTCTGCCGATCCG 4389618 29 100.0 32 ............................. TAATATTGATAAATTCGATGAAGTAACCGGAA 4389679 29 96.6 32 ............................A TCGAAGTACCAGCGCCGCACCGTGTTTTTTGC 4389740 29 100.0 32 ............................. GTGGCCGGTGCTGCCAGTACGGTTACCGAAGT 4389801 29 100.0 32 ............................. CATCCACGCTTCTGGCCACCAGGCAGATAATC 4389862 29 100.0 32 ............................. GTGCTCCTCTTCCAGATACTGGGCCAGGAGCT 4389923 29 100.0 32 ............................. TACAGGACGACAGCATCCTGGAACATTTCGAC 4389984 29 100.0 32 ............................. CTCTGCGTGTGCGCCTCCGCTACGAGGTGACG 4390045 29 100.0 32 ............................. TGAATATTCATTTACTAAATTAGAGACAATTC 4390106 29 100.0 32 ............................. CGGATTAAACGTAAGGCCGCGCGCTGGCGTAA 4390167 29 100.0 32 ............................. GTGGTTTGTTACCGTGTTGTGTGGCAAAAAGC 4390228 29 96.6 32 A............................ GAACGGAGGAATATAAGAACAAAAGCCCGCAG 4390289 29 100.0 32 ............................. TAAACCGCTGGCGTGGTCAGTTGCGTGGCGGT 4390350 29 100.0 32 ............................. GGCGCCGGCCTGATCACTATCGGGTAACGGTG 4390411 29 100.0 32 ............................. GGCCTGAACCAGAGCATGATCTACACCTGGAA 4390472 29 100.0 32 ............................. ATTGGGTAGAGCAGGCGAACGGATGTCTTTTT 4390533 29 100.0 32 ............................. TTTTCACGGTCGAAGTTGTGCATGCTTTCTGC 4390594 29 100.0 32 ............................. TCGACGCCCCGGTGTGGGAAGACTTTGGCACC 4390655 29 100.0 32 ............................. CAGCGCATACGGGTTAAACCGGATCACCTCTT 4390716 29 100.0 10 ............................. ACATAGCGCC Deletion [4390755] 4390755 22 51.7 0 CGA.A.G.A...........T.------- - Deletion [4390770] 4390777 29 100.0 32 ............................. GATCGATCGTTATTGTTGAACCGCACTATGGT 4390838 29 100.0 32 ............................. CTTTTAATAATATCATCGGCAATGTCCTTATC 4390899 29 100.0 32 ............................. CGGGACCGGATCCGCGTGGGCGACCAGGATTA 4390960 29 100.0 32 ............................. CACCGATATTCAGTGCGCCAACGCCATAGCAA 4391021 29 100.0 32 ............................. CCGAGGTTTTTCATACCTTCGGCAGTCGTAGA 4391082 29 100.0 32 ............................. CGGAAATTTTGATTAGTTGAATCTGTGCCATT 4391143 29 100.0 32 ............................. CCGACTTGGGACGAGGATCCGGCGGAATGTCG 4391204 29 100.0 32 ............................. TAATGGCAAAACCATGACCTGATCCGGGCGTC 4391265 29 100.0 32 ............................. CCTGAATCTTCACTTCGTCGATCATTCTGCGC 4391326 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 4391387 29 100.0 32 ............................. GTAACGCAGACGGCGAACGTCGGATCCATTGG 4391448 29 100.0 32 ............................. GACCAGAAAGCCTGGGCATTGTTCCGCTCATT 4391509 29 100.0 32 ............................. CCCCCGGCCGCGTGGCCGATTGCCATTACCGC 4391570 29 100.0 32 ............................. TATACAGTATTATCATAGCGAATTCCCATCGG 4391631 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 4391692 29 100.0 32 ............................. GCACCAACGTTTACGGTGCGGTGGTGAAACAA 4391753 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 4391814 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 4391875 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 4391936 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 4391997 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 4392058 29 100.0 32 ............................. TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 4392119 29 96.6 32 ........T.................... ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 4392180 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 4392241 29 100.0 32 ............................. CTGCAGGTAAATGACTGGATGGGGGAAGAGGT 4392302 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 4392363 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 4392424 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 4392485 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 4392546 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 4392607 29 100.0 32 ............................. TCCCCTACCACCCACTGAGCAAACTGGTAGCA 4392668 29 100.0 32 ............................. CAGATACCAACGGTTACTACGGCAATCAGCAC 4392729 29 100.0 32 ............................. AAGGTTGACCTGTTGTCGGCAACCATCGAGCC 4392790 29 96.6 32 .........A................... GAGGCGCGCGTTGTCGTCGGTGAGATGCGCGA 4392851 29 96.6 32 .....A....................... GCCATTCGTGCTTCTTCGCTTTGCTGCATCCA 4392912 29 100.0 32 ............................. GAATATAAAACCAGATTCCATATAGCCCTGTG 4392973 29 100.0 32 ............................. CCGGTTACGGGGATGACTGCAATTCGCTCCTG 4393034 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 4393095 29 100.0 32 ............................. GCGGCGTCAGGTGTGTGGCAGAAAATTATTGC 4393156 29 100.0 32 ............................. TCGTCTGAGTTCCGGCTTACGCCGTGCCGACA 4393217 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 4393278 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 4393339 29 96.6 29 ............T................ GGGTTCACTTGGGTGAAACTGAACTAACT 4393397 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================ ================== 66 29 98.5 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AGGTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTA # Right flank : CGTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGATTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [11-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //