Array 1 199627-199241 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEWQ01000003.1 Ignatzschineria ureiclastica strain KCTC 22644 mira_70xPW3340_c3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 199626 36 100.0 33 .................................... GATGTGCGCTTCTGTTACTTTAGGCTTTTTACT 199557 36 100.0 35 .................................... GGTAACCTTTAGGTCACCCTTAAACTTATTATGTT 199486 36 100.0 34 .................................... ATAATTATGGAACTGAGATACATAGTCCCAATAG 199416 36 100.0 34 .................................... CGATAGCATCAGTTTGTAACTTCTGCTCACGGCG 199346 36 100.0 34 .................................... CCAATGACGTGCGAACACGTCACCCCAGAATTCA 199276 36 94.4 0 ...............................G...T | ========== ====== ====== ====== ==================================== =================================== ================== 6 36 99.1 34 GTCAGAATCATGCCCTGTTTGAAAAGGGATTAAGAC # Left flank : TCAGATTGTTCAATACAATAAATTCAAGCAGGCGAAGTACAAATAATGATTCTAACTCAGGGCGTAACCCTGATTTCATATCAAGAAGATCCCGGCTAAAGTTATCATGTAGATCACTTTTTTTGGGATAGTAGGTAAAGGAAGTACCGGCCTTTCTATAAGACGCAATATTTAAAGCACGAACTCGATTCATTGTCATACTGCATCTCCTATCTAACGATTGATTAATAATCTTGATTAACTGATAGCTAATGTACGTTAATAGTAGGCAGAAAAGATAAAGTACAAATTTGCCAATCAGTAAAATGCGATAGGATAAAAATTTTATAAAATAAGTAAGGCTGTTATAATGACCGAGATTCATTGATAAATGACCGATGTGAAAAATGTCTCAGGATAGGGATCGTATATGTTATCCAATGTCATCTTTTGTAAATTTGTAAAGATTGGAAATGGTTATTGTAACTTATTGAAATATAAGGTTAAATTTTAATGGTGCG # Right flank : AAAAAGAAAGCCATCATAAGTTTAATTATGATGGCTTTTTGTTGTCTGAAATAAGAAAATTAACCGCATCGCCGGGGCGAATGATCTCATTCTTTTAGCAATCGTGTGCCGGCAGTTGTGGCGCTTTCGCGCCGGGGAATCTCTTAAGTTTCGGGATTTGCTTCATTGCCGAGTGATTGAGAATCATTCATCTGCGGGCGCTCGGTTGCTCTGGAGTTGCAAGCATTCTCTCCCGCCGGACATCGACTTTTCATTAGAATGAAAAATTCTTAAAAATTTTCCTACATCTCAAAAGTGGGTACTATCTTTCTGGTTATAAATGTTCCATAAGAAAATTAACCGCATCGCCGGGGAGAATGATCTCATTCTTTTAGCAATCGTGTGCCGGCAGTTGTGGCGCTTTCGCGCCGGAGAATCTCTTAGATACTGGAAAGCTCAATTACTCTAACAGTTTCAAGGGAGAATCTTGAGGAGGGGAGAGTTGCTGATAGAGTTTCGAC # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAATCATGCCCTGTTTGAAAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.80,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 203193-202811 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEWQ01000003.1 Ignatzschineria ureiclastica strain KCTC 22644 mira_70xPW3340_c3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================== ================== 203192 36 100.0 32 .................................... ACATCAAGTGATACGAAGGTTTCTTTGTCTTC 203124 36 100.0 34 .................................... TCCACATTCACATCCCCATCCTCGTCAAAAATAT 203054 36 100.0 33 .................................... GATTCCTTTGGAGCGTATACAACTGACGTTCCT 202985 36 100.0 34 .................................... TCGGTCGCGAGCTTCTGCTCACGGCGAGAACGTT 202915 36 100.0 33 .................................... TCGATAGTTTTGCTAGACCCTGCTGGGATTTCC 202846 36 97.2 0 ...............................C.... | ========== ====== ====== ====== ==================================== ================================== ================== 6 36 99.5 33 GTCGGGATCATGCCCTGTTTGAAAAGGGATTAAGAC # Left flank : TAACGGAGCGAAGAATATGAAACAATTTTTAGTCTCTTATGATATATGTGAACCTCGACGTTTACAGCGTATTCATAAGTTATTAAAGGCGTGGGGAATACCGCTTCAAAAGAGTGTTTTTATTGTGGATAGCTCGCGGGATATTGTGCAATTAAAACAACTATTGCTAGAAACAATGGATCAAAGTGAAGATGACATTCGTTTGTATCCTATTTTTACAGAGAGTTTAGTTTGGGAATGGGAAGATAAATCGATATTAGAAGGGATATTACTCTGTTAGGTAAAGGGCATTAAATGCATTGGTAATCCGATGTTGATATTGTTATAATCAGTCACTTATTGATCTCTGATCTTGGCAGCATTGTAATAATGATAATTTTTGATGTTTTCTATTAGAAGGGTGTTTGGGAATGTTATCCAATGTCATCTTTTGTAAATTTGTAAAGATTGGAAATGGTTATTGCAACTCATTGAAATATAAGGTTAAATTTCAATGGTGC # Right flank : CTTTAAGTTAGAGGGATGTGTGTTCCCTCTTGTGTCGGGATCATGTTTGAAAAGGGATTTATGCCTATTAATCTCCCCCAAAGATTGGGGGATGATCTTCCATTGATGTTCTATCTTTTGAATAATTTAATCTGCTCGAAGAGATTCGAGTAAGGTCTTTGTACGCCTTTATTATGAGTTTTTATGTGCAATCCTGTTTAAAAGGGATCGTGGGGAATGCCCCAATTGGATTAAATTTTGAACTGAAAGGTAGTTAATATGAAGATAAGAGAGATCTTAGGTGTTTTAATGATGGTTTTGCTATTGGCAGGTTGCATGTCTGCAGCTCCGAATTATATTAATGGTCGCTACTACATGGCCGGAGATTCAGATTGTAAGCGAGGGAGCGTGAATCAGTACGGTAATTTAAACTGTTATAATTCAAAAGGAGAATATACTGGATCAAGACGACCTATCTCTGAGATGCAAGCAAAAGCCTGGTATGATAGCCAAAATAGCTC # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGGATCATGCCCTGTTTGAAAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.80,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 123763-124902 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEWQ01000006.1 Ignatzschineria ureiclastica strain KCTC 22644 mira_70xPW3340_c6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 123763 36 100.0 32 .................................... CTCTTCGACTTCTACCCTGCTGTTGCGTGCAG 123831 36 100.0 32 .................................... GTGGCAAGTGCATCAGTGGCAAGTTTCTGCTC 123899 36 100.0 32 .................................... CGCATCAACGCGTGCATCCACTTCTCCAACAG 123967 36 100.0 34 .................................... AGTTTTTGCTCTCTACGTGAACGCTGCTGAGCAA 124037 36 100.0 33 .................................... GCCTTGGGATAATTCATATTCCCAAAGACAACG 124106 36 100.0 32 .................................... AGGTACCCCATATCATCACAGTCTTCGTATAC 124174 36 100.0 32 .................................... ACTTTAGTTACCACAGTGGCAGAGCTAGCCAC 124242 36 100.0 34 .................................... GACTTTAAGCCATTTACCTGATTTGTACACTGCG 124312 36 100.0 32 .................................... AGATTTTCACGCGTCTCTCAGCTTCCGCTGAA 124380 36 100.0 33 .................................... TTATTACTTCTACGGGTTTCCGCAGACTCTTCC 124449 36 100.0 34 .................................... GGAGATCTGGTTACGAACGCAGATCAACCGTAGT 124519 36 100.0 34 .................................... ACGTTTCTTCATACGTTCAAGGAAAGAAGAAGAT 124589 36 100.0 32 .................................... AATATTCTCTAATGTAGGTAGATCTTTATATA 124657 36 100.0 35 .................................... GCTTTATCCTTGCGGGATTTCGCCAAAGATTTGAG 124728 36 100.0 33 .................................... TTCCCAATCCAATGTGTTGCGTTATACAACGAG 124797 36 100.0 34 .................................... AGATAAGTCTGTAGTGGTTTCTACAGCAGTTATG 124867 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =================================== ================== 17 36 100.0 34 GTCGGGATCATGCCCTGTTTGAAAAGGGATTAAGAC # Left flank : GTTTGAGAAGTTGAGAAACTGCTCCCCCGCGGGCGCGCGGTTAGCGGTTGTTCTGGACTTGCAAACATTCCCTCCCGCCGTGAGTCTGCTTTATTAAGAATCACTAAGAGAATTTATCTCATCGCCGGAGCGAATAATCCCGTTCTTCCGGCAATCCCGCGCCGGCAAGTTTGGCATCTTGAATACCGAGGTTGTTTGAGAAGTTGAGAAACTGCTCCCCCGCGGGCGCGCGCTTGTTCTGGACTTGCAAACATTCCCTCCCGCCGGGGATGAACTTTTGATAAGATCCACAGAAACCTTAGTAATTTCCGTTATTATTGCTATAATAAACACTTCAAAGATCCCTGATCTCGACAATCAGATACTGAAATGTTATTTTTGATAAATCCATACAAATAATGGTGATTATATGTTATCCAATGTCATCTATTGTGAATTTGTAAAGATTGGAAACAGGTGTTGTAACCTATTGATATTAAAGATAAAATTTTAGTGGTGCG # Right flank : CACTGAGTTGTAAGTAGACTTCTTAACTTTAGAAGTCGGGATCATGTTTGAAAAGGGATTAAGATAAAGAGAAAGCCTTCATTATGAAGGCTTTTTTATTGTCTGAAATAAGAGGATTTATCCCACCGCCGGAGCGAATGACCTCGTTCTTCCCGCAATCCCGCGCCGGCAGGTTTGGCATCTTGCATGCCGGGGTTGTTTGAGAAGTTGAGAAACTGCTCACTCGCGGGCGCGCGGTTGTTCTGGACTTGCAAACATTCCCTCCCGCCGTGAGTCTGCTTTATTAAAAATCACTAAGAAGATTTATCTCATCGCCGGAGCGAATGATCCCGTTCTTCCCGCAATCCCGCGCCGGCAGGTTTGGCATCTTGAGTGCCGAGATAAGAGGATTTATCCCACCGCCGGTAAAATAACCTCGTTCTTCCGGCAATCCCGCCGGCGTTGTTTACTTTGTGCGGGGCAATAAAAATCCCGCGGTGGGCGGGATTTGTGGGTTTATT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGGATCATGCCCTGTTTGAAAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 2 131582-131882 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEWQ01000006.1 Ignatzschineria ureiclastica strain KCTC 22644 mira_70xPW3340_c6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =========================================== ================== 131582 29 96.6 39 ...C......................... GCGATAGTTGCTTTAGAGAGTTGTTTTAAGTTGTCGGGA 131650 29 100.0 33 ............................. CAATCAAATCTTTTATTGGGTTCATTTCAAGAG 131712 29 86.2 43 ..GG.T.A..................... TTAGGGTTGTTTGTGGTCATCCCTAACATTAGATTAGTCGGGA A [131717] 131785 29 100.0 40 ............................. GGTAGAGATAGTTGTAAGACCTGCATTTACAGTGTCGGGA 131854 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= =========================================== ================== 5 29 95.9 39 TCATGCCCTGTTTGAAAAGGGATTAAGAC # Left flank : ACACGCTCGCCCGCCTCTAACCGAGTTGTGCTCGGCGCTAATTTATAGAGCCAAACAATCTTCTGAATCTCATCAGTCAGCGCTCGCTTGAGTTCCGGCGTTAATGTCAGATGTTTCAGTAACGCTTCTTTGGTTAAAGGCTTCTGATAGAGCGCATCTGTAGGATATTGAAAATAGGCCATCTGCTACTCCTTTGGCATCACAATGCACATGAATAATTTAAAATGATCTACCACTTTTACCCTACTCTGATTAAACATCTGAACTCCCCTCAAATTGATCCCCAAAGATTCGGGCATAGGCGATATAATCTATTTTTTAATAAATTGTCATAATTTTAACTGAATTTAAAATAATTTTCCCACATCTCAAAAGTGGCTACTATCTTTATGGTTATAGTGAGATTCTAAGAGGGTTTATTTCACCGCCTGGAATGAACTTTTGATAAGATCCACAGAAACCTTAGTAATTTCCGTTAATATTGCTATAATGACTCATAG # Right flank : TAAAGAGAAAGCCTTCATATGAAGGCTTTTTTATTGTCTGAAATAAGAGGATTTATCCCACCGCCGGAGCGAATGACCTCGTTCTTCCGGCAATCCCGCGCCGGCAGGCTTGGCATCTTGAGTGCCGGGGTTATTTGAGAAGTTGAGAAACTGCTCTCCCGCGGGCATGCGCTTGTTCTGGACTTGCAAACATTCCCTCCCGCCGTGAATGAGCTTTTGATAAGAATGAAAAAATTTCTAATCTTTTTCCCACATATAAAAAATAGATACTACCTTTATAGTTATAGATATTTCATAAGAGGATTTATCTCACCGCCGGAGCGAATGACCTCGTCCTTCCGGCAATCCCGCGCCGGCAGGCTTGGCATCTTGAGTGCCGGGGTTGTTTGAGAAGTTGAGAAACTGCTCCCCCGCGGGCGCGCGGTTGTGCTGGACTTGCAAACATTCCCTCCCGCCGTGAATGAGCTTTTGATAAGAATGAAAAATTTCTAATCTTTTTC # Questionable array : NO Score: 5.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCATGCCCTGTTTGAAAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.80,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 3 133462-134121 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEWQ01000006.1 Ignatzschineria ureiclastica strain KCTC 22644 mira_70xPW3340_c6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 133462 36 100.0 32 .................................... CGAACACACACAGGTATCGAGCCAACGTGGCA 133530 36 100.0 33 .................................... TTGTTCTCTACGTGATCTTTGTTGCGCCAATTC 133599 36 100.0 34 .................................... GCTGTTGTTTTGAATGTAGCCATTGTGAACCTCC 133669 36 100.0 33 .................................... GTGATAACACCGCCAGTTACTGTATCAGCAGCG 133738 36 100.0 32 .................................... ACTTAGATACTACATTGAGAGTAGAGTTAATA 133806 36 100.0 34 .................................... GACCTCCTTTCATATAATCAAGGGTTTCTATAGT 133876 36 100.0 34 .................................... AACAGATACATCTTCAATGTTACTTTCGTGAGTT 133946 36 100.0 33 .................................... TCATATTCCCATAGGCAACGTTTTACGTGTTTT 134015 36 100.0 35 .................................... AAGGTATCCTCTACCTCTTGGTAGTAGGACTCATC 134086 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =================================== ================== 10 36 100.0 33 GTCGGGATCATGCCCTGTTTGAAAAGGGATTAAGAC # Left flank : CATTACAATTGAAGTCATTAATATTGGACATCGAAAAGATATTTATAAATAACGTGGAGTACCTAAACCCGTTCATCTAATTTAAGAATTGATCCCACCGCCGGAGCAAATGACCTCGTTCTTCCGGCAATCCCGCGCCGGCAGTTGGGCGCTTTCGCGCCGGGAAATATCTTAAATGCCGGGATCTGATTCATTGCCGAGAGATTGAGAATCTCTCTCCCGCGGGCGCGCGGTTGTGCTGGTTGCGCGATTATTCCCTCCCGCATGGAATGAGCTTTTGATAAGATCCACAGAAACCTTAGTAATTTCCGTTAATATTGCTATAATACACACTTTAAAGATCCCTAATCTCGACGATCAGATACTAAAATGTTATTTTTGATAAATCCATACAAACAACGGTGATTATATGTTATTCAATGTCATCTATTGTGAATTTGTAAAGATTGAAAACAGGTGTTGTAACCTGTTGATATTAAAGATAAAATTTTAATGGTGCG # Right flank : CTCCCAATTCTCCTTGACAGCTTTCGACTTATCACGTCGGGATCATGTTTGAAAAGGGATTAAGATAAAAAGAAAGCCTTCATAATGAAGGCTTTTTTATTGTCTGAAATAAGAAGATTGACCGCATCGCCGGAGCGAATGACCTCGTTCTTCCGGCAATCCCGCGCCGGCAATTGGGCGCTCTCGCGTTGTGAAATATCTTGAATGCCGGGATCTGATTTATTGCCGAGAGATTGAGAATCGCTCTCCCGCGGGCGCGCGATTGTGCTGGACTTGCAAACATTCCCTCCCGCCGTGAATGAGCTTTTGATAAGAATGAAAAAATTTCTAATCTTTTTCCCACATATAAAAAATAGATACTATCTTTATAGTTATAGATATTTCATAAGAAGATTTATCTCATCGCCGGAGCGAATGATCTCGTTCTTCCGGCAATCCCGCGCCAGCAGGCTTGGCATCTTGAGTGCCGAGAGATAAGAGGATTTATCCCACCGCCGGTA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGGATCATGCCCTGTTTGAAAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 1 437443-432729 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEWQ01000004.1 Ignatzschineria ureiclastica strain KCTC 22644 mira_70xPW3340_c4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 437442 28 100.0 32 ............................ AAACCTTGATTCCGCCATCGTCACGAACAAGC 437382 28 100.0 32 ............................ TCATTTACGATGAATTTGCGCTTGATCTTAAA 437322 28 100.0 32 ............................ ATCTGTTGATCGCTTTACTACATCGCCCTTAA 437262 28 100.0 32 ............................ TCAGGTAAAGCATTGAAAGATATGACTTCTAC 437202 28 100.0 32 ............................ TAAAAATTAATCTGTGGCAGTGCTAAGCATCG 437142 28 100.0 32 ............................ GGCAAATTGCTGACTTGTGTCGAGTACAGGCA 437082 28 100.0 32 ............................ ACTCGATCTCTGAATCGATTGTTACAAGTGAG 437022 28 100.0 32 ............................ CTTCGCTTTCCACGATAAAGAGCCATCTTCAA 436962 28 100.0 32 ............................ TGACATTATTTTAGTTATTGTTGTCGGGCTAA 436902 28 100.0 32 ............................ TCCGGCTTTAGACCTCTAGAAATAATCGATAA 436842 28 100.0 32 ............................ TACAGAGAATGCCTGATGATCAAATTAGAGTA 436782 28 100.0 32 ............................ AGTTTAAATTGCCGTATTTCTTTTTGCCGTCG 436722 28 100.0 32 ............................ GATCTTTTAGAACCTTACACTAATCGAAAAGA 436662 28 100.0 32 ............................ TTTTTGATTAGCTCCTATGGTTGCCCTGCAAA 436602 28 100.0 32 ............................ TCTTTCAAGCCCCAAATGAGCGACTTTTTGAG 436542 28 100.0 32 ............................ GATAATCAAGGGCGGTCGAGTAGAGTCAGGTC 436482 28 100.0 32 ............................ TGAAATGATCTTTACGGGATGGGCTGAGGGTG 436422 28 100.0 32 ............................ GTATGCTAGATCAACGTCTGATTGCTCGCCCC 436362 28 100.0 32 ............................ TACAGGCACACCGCAATAGAGGTCAATATGAT 436302 28 100.0 32 ............................ TTGAAGTGTTCATTCTCAGTCGTCAACATGGA 436242 28 100.0 33 ............................ AGTCAGACAGTTCAGCCAATCTATTATCCGCGA 436181 28 100.0 32 ............................ TGTCGTTTTCTTAATCGGCAAATCATCAATTG 436121 28 100.0 32 ............................ AAAAATCATAAAATCATAGATAAAGCGCTTAA 436061 28 100.0 32 ............................ TGATAATTCAATGCCGGTCGCATCTTTCACAA 436001 28 100.0 32 ............................ TAAAAAAAACTGTGCGTTTTGCGCATTAGATA 435941 28 100.0 32 ............................ TTAATCTTCTCTTCTTGACCTGCTGCGATTCT 435881 28 100.0 32 ............................ ACTTTGGTGCGGGAATGTTCGGGGTTTGCTTT 435821 28 100.0 32 ............................ TTTTGATTGAATTGAGCATCCAACAAAAGGGT 435761 28 100.0 32 ............................ TCAATGTTTAAATTCATTCAATGAAAATACTT 435701 28 100.0 33 ............................ CAGTCTGATTGTTGATCTCATAATCGAGATCTC 435640 28 100.0 32 ............................ TAAATGTTCCGCCTGTTCCCGTAATTTTTTGA 435580 28 100.0 32 ............................ ACAGGATACGGTTGGGCAAGTTCTCAATTAAA 435520 28 100.0 32 ............................ TGAAAAATATATCAATAAAGCGATTAAATTTA 435460 28 100.0 32 ............................ GTAATTCTCTTCATCTTGACCGGTTAGGTCAT 435400 28 100.0 32 ............................ AAGTAACAAACATTGCATAACATATTGATTTA 435340 28 100.0 32 ............................ TGAGATCTATGTTCAATATATTTTTCAAACAT 435280 28 100.0 32 ............................ AATTTATCATCGCTTTGGAATGTCGTTTTGAT 435220 28 100.0 32 ............................ AATCCCGCCACCTAAAAGAGAAAACGCCGGAA 435160 28 100.0 32 ............................ AGCGATTTTCTGCACCAATTCATCAAGCGTCA 435100 28 100.0 32 ............................ TTTTTGGGCTTCTTCTTCAGCTCTTTTGATTA 435040 28 100.0 32 ............................ CATAATATGCTCACCGATCAGGCTGACTTCAG 434980 28 100.0 32 ............................ TTTCAAGCGCTCTAATTCCTCTTTGCCAATCA 434920 28 100.0 32 ............................ AAAAAAGGAAAAGATGACTGGCTTTATGAATT 434860 28 100.0 32 ............................ TAGATACGATGTTCATGCAAGCGCAGGTCATG 434800 28 100.0 32 ............................ AATTCGGACGGGGGTTCGCGGGACGTGATTTG 434740 28 96.4 32 .....G...................... GGCTGGTGAATGATGTTCGCCGGTCATGTGTA 434680 28 100.0 32 ............................ ATTTCTTCAAAGAGCGGCAGCATTTCATTTTC 434620 28 100.0 32 ............................ AGAAAAATGATTGATGAATTAAAAGCCTTAAT 434560 28 100.0 32 ............................ AATCGCTTACACTTCTAACGATTTTAGTAATG 434500 28 100.0 32 ............................ AGAAGTGAAAGAAGATCCGCGAGGTATTGCTA 434440 28 100.0 32 ............................ GCACTGGGTTATTAATCAACTAATCGAACTGT 434380 28 100.0 32 ............................ CTCATCATTCTCTTTCATCAAATAGCGCTCCC 434320 28 100.0 32 ............................ ACACCGCTATATTGCTCACGATCTGATACAGA 434260 28 100.0 32 ............................ ACACCGCTATATTGCTCACGATCTGATACAGA 434200 28 100.0 32 ............................ GTCTACGCTTGATCTTGCAAAAGCGGGTGATG 434140 28 100.0 32 ............................ ATTTTGCTGATCTCCTCTGTTTGCGGGGCAAC 434080 28 100.0 32 ............................ CTGAAAGCACAGATCCCAATGCACAAACGCCG 434020 28 100.0 33 ............................ GTTCTTTAGTATTTCTCTTATATGCACTATGCT 433959 28 100.0 32 ............................ GAAAACTGAGCGAATCAAAGGACTCACGTCGA 433899 28 100.0 32 ............................ TTTACGATCTCTCTCTCACAAATTCTGATGCA 433839 28 100.0 32 ............................ ACAGAATAGCGCTCTGCATCTGCTTTAAGCGC 433779 28 100.0 32 ............................ AAGAAGTTGCTTGTGCGAGCAAAGACTTCAAA 433719 28 100.0 32 ............................ GGAATGTTACGACCGTCCACAGTTGGACCCGA 433659 28 100.0 32 ............................ AATACGACTCCCAAGGATTGTGGTTCCAAATC 433599 28 100.0 32 ............................ TAAGCGCAGTGACTGAGCTTTTACAGTCTGAG 433539 28 100.0 32 ............................ GCATTTAATTGCGCTAAACGGCTACGAGGTCA 433479 28 100.0 32 ............................ AAAACATCACAATAGAAAATGTGAGCTTGCAT 433419 28 100.0 32 ............................ GTCGCCGTTAAAGGCAGAGGGGATGACAGGTA 433359 28 92.9 32 ..........GG................ AAACTTTCAAACGCCATTAGCTGACTTTTCAG 433299 28 92.9 32 ..........GG................ TGCGGAAAGCCCAGGCATTGAGATCACGCTTA 433239 28 92.9 32 ..........GG................ ACCCGTGATCTCTTGATTCTTTAATTTCATTC 433179 28 92.9 32 ..........GG................ TTTACCGCTAAAAAATTTCACGATCATTTATA 433119 28 92.9 32 ..........GG................ ATTCAGGACTTGCAGTCATCATATATTCGACC 433059 28 92.9 32 ..........GG................ AAAAAGCGAGCAACTTAGCTCAATGGGGGAAA 432999 28 92.9 32 ..........GG................ CAATTGCCCACACTGAAGATATCTTATATATA 432939 28 100.0 32 ............................ GCTTCGATCGTGGGTTCTCGTTCTGTGCATTG 432879 28 89.3 32 ..........GT.C.............. AACGGGAACGTATCGAAGCAGATAGAAACATT 432819 28 92.9 32 ..........G..C.............. GCTCGTAAGACCTCTTCTTAGGAAGAGGTTTT 432759 28 75.0 0 ..........GA.C...TTTT....... | ATA [432733] ========== ====== ====== ====== ============================ ================================= ================== 79 28 98.8 32 GTTAACCGCCACATAGGCGGCTTAGAAA # Left flank : GATCGATTATTAGATTCTGTACACATTCAATCAATTAAGGAAATCCCCACTAAAATTGATGGTTATGCGAAATATCTTTATTGCCGACCAAAAGGTGAATCTCGATTGAGAAAAGAGAAGAGGGAATATGCTGAATACTACGCTCAATTACATTCAATATCTGTAGATGAGGCTCTGACTCGGTATGATGATTGGGAGTTTAAAAAAGTCTATTACCCTTATATTCAGATGAAGAGTCTTCATCGAGATAATTCATTTAAGCTTTTTGTCAAAAAAGAAGTTGTGCAAGAAAAAAATTTAGAAAATAGCACTCATCAGCTATTTACAACTTATGGTTTATCTGCTGGGGGCATTGTTCCTGAGTTTTAACCATTATTTTTTGCTCTTTAAAAAATTGGATATAATTCAGTAGGTTATAAGAAAGGGAGAAATCATTAGTTTTTTAGGGTGAAATACTCAAGAAATTAGAATTTCTCCCTATTTTGAGCTTTTAATCTATA # Right flank : ATCCCGCCAATTGGCGGGATCTTTTTATCTCTATGTTGGATATGAGAAATTCTGATTAATAGGAAAGTATATTAAATCTTTTCTGCCATAATTTCAGCAACATCATTTCCCCAAACAGGGACTTTACCATCGGTTTCAAAGAAGAGGGTTTTATATTGCATTTTGAGCATATAAGGAATACGACCCATTTTGAGAACCTGTGTATCGCCACCAAACCAAGAGTTCGAGCGAATGTAGAAGCCTTTGCCGCTTCCAATATCACCAATACAAAATACCCAAGGTTTAAGGGTTTCATTGGCTTTTTCTGCATCCATTTTGCCAAGATCCAATGCAACTTGTCGGCCGATGATTTCACATTGTTGATGGCCGATAGCCCCTAGTTTTGGCATGGTAACTGCAGCACAATCACCGGCAGCGAAGATGTTTTTGTATTTTGGATTACGCATTAAAAGGTCAGTAATAATAAAGCCTTGATTATCACTAATCTCTAAACCTTTTAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACCGCCACATAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTAACCGCCACATAGGCGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.90,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //