Array 1 1-425 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAG01000179.1 Fusobacterium necrophorum BFTR-2 contig0179, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1 28 93.3 37 --............................ ACGACTAGGGGAATATGATATCCATAATCAAAATCAA 66 30 100.0 36 .............................. ACAGAAAACTTATTATTTGGGTTAAAGTATGCAGCT 132 30 100.0 36 .............................. TTAAAGAGGTGGCAAATGATAGGATATGTGACACTA 198 30 100.0 37 .............................. ACAAACAGGAGAAGAGTTGGAAGAATTGGGACGAAAG 265 30 100.0 35 .............................. GAGAAAGAAATCAGAAAATGTTGCCTCGTATGATA 330 30 100.0 36 .............................. ATCATTAGGACAGGAACACAAAAAGGAAAACAAAAT 396 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 7 30 99.0 36 CTTATAATAGAAACAGATTGAAATGTAAAT # Left flank : | # Right flank : | # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTATAATAGAAACAGATTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : NA // Array 1 34-1121 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAG01000320.1 Fusobacterium necrophorum BFTR-2 contig0329, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 34 30 100.0 37 .............................. CTAAGTCTCGATGAAGAGGTACTGTTCCTCTTCGTGT 101 30 100.0 36 .............................. GAATTATCATTTATAAAATTATACATCATTTCCTCC 167 30 100.0 35 .............................. TATGGTTTAACTTAAAATTAGATACTTTCGCATTA 232 30 100.0 36 .............................. GGAACTCCGGAACAGAGATGTTTTGAAGTTATGCAA 298 30 100.0 35 .............................. GAATTACTTGTTCTTCATTTTGATTGTCCATATCT 363 30 100.0 38 .............................. GATTACTATGAAAAAGAAAAATTAGGATTGAAATGTAA 431 30 100.0 36 .............................. TTTTCTTTTGTTCTTCTAATTCACGAATTGTTATTC 497 30 100.0 36 .............................. GTCCCTAAGGTGAGCTATATGTCAATATAGCTTGCC 563 30 100.0 37 .............................. GTTTTTTGTAAAACTTTCTTTGCTGTTGTTTTTCCTC 630 30 100.0 37 .............................. TTATACAAAGAATAAATGTCACTATCATTTTTTATTT 697 30 100.0 37 .............................. CTTCCGAAAACGGAAAATTGACTTCGGAGATGATTGA 764 30 100.0 36 .............................. CTTTTTAGCCCAGATTCAAATTTTTTACCTGAAATA 830 30 100.0 38 .............................. GATTACTATGAAAAAGAAAAATTAGGATTGAAATGTAA 898 30 100.0 35 .............................. TCAGGAAGAGGAGGAGCTAATGCTTTTACATGATT 963 30 100.0 37 .............................. TTGGATTTATCTAATAATTCTTTTTGTACTTCAGTTT 1030 30 100.0 35 .............................. CCTAATCATCATAATTGTAGAAGTCAAGTGATTGC 1095 27 90.0 0 ...........................--- | ========== ====== ====== ====== ============================== ====================================== ================== 17 30 99.4 36 ATTAGAGTATTACTAAAGTAGAATGTAAAT # Left flank : GACTACGCAAGGGAGGTGGAAGAATACTATGCAA # Right flank : | # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAGAGTATTACTAAAGTAGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [28.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 1 5132-5425 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAG01000212.1 Fusobacterium necrophorum BFTR-2 contig0214, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 5132 30 100.0 35 .............................. GAGAAAGAAATCAGAAAATGTTGCCTCGTATGATA 5197 30 100.0 37 .............................. ATAGAGGAATGGTCAGACTCCTATACACTCAAATTGA 5264 30 100.0 35 .............................. AAATGTGGAAAAGAAATTTTAGAGAAACCTTCTTA 5329 30 100.0 37 .............................. AACTTTTTATGACATCTTTAACAAAATTTTCTCTCTC 5396 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 5 30 100.0 36 CTTATAATAGAAACAGATTGAAATGTAAAT # Left flank : GCATTTAATTGATTTTGAATGTATTAATGAAGTAATTTTAATAAGAATATTAGGAATGACACAACAGAATATACTGTAGATAAGTATCGAATGGAGGTCTTCATAGGAAATGAATTTTAACTATAAATTTTAAAGAGCTGATTACTATGTGGACTCGTTTTAGGTGAAAGCTTCCACTAATGATAGTATGGCAATATACCTTGAGGTTAATTGATAAAAATTTATTTAAGAAGAAATGAAAAAATAGATTAAAATTGTCAGTAAAATATATGAACAAGAATAAAGAAAAGTATATTAGAGCCAAATAATATAAGTTTTTATTTGTCGACCCTCAATAATGTAAATTTCCTGAGGGTTTGACAAACTTACTTTTAGTGAGGGATTAGGGATGATTTTGACATTTTTTATCAATTGAAATTAATAAAAAATGATACCATCATAACAGGTCGACAAATTTGGGAGTGAAAACTAGCTGAAATAAAGGGCTTTATCCTAGTCGG # Right flank : TTTGTAGACTAGGTTCTTTGTCAAATCGTGTTGGTGAAAAAAACAAAATAATAAAATCGCTAGGGGAGGAATCTTTTAGATTTCTCCCTCTTTTAATATGCTGTTAGGATTACAAATTAAGATTCTTCTGCGCAAGTTTTGAAAACTTTTGTAACCATATGAAATCCGTTTCATCAACTTAATCTTTTGATGGAAGCCTTCTACAATTCCATTTGAGAAAGGACTGTCAATACTGTTTAAAATTTGGAAAGTAAGTTTTCTGTATGTCTTTAAAGTACGTGCTAAATGAAGATTATCACATCCTTTGTACTTCTCTAATAAAGAGAGAAAATTTTCTTTCTTCTTATGTTGAAATAGATAAAGAAAATTTTGATATATCCCATAGTATTCATCTAATTTTGGAATTTTCTTCAATAGGAAATTTACAATTTCTCCTGATGAAATATATTGTTTAAAAAAATAGTCATAGTAACGCTTTTCTGATAGAGAACTAGCTGATT # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTATAATAGAAACAGATTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [58.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA // Array 1 32-325 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAG01000321.1 Fusobacterium necrophorum BFTR-2 contig0331, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ========================================= ================== 32 27 100.0 39 ........................... AATTTTCGCTACAGTGCTTGAATGAAAATCAACCGCTTC 98 27 100.0 40 ........................... AATTCTTTCGTTTGCATTGCAACAATACTTTTTGTAGCAA 165 27 100.0 41 ........................... AATGAGCCATAAAGGAGGCATTTTTATGAAAGAAACTATTA 233 27 100.0 39 ........................... AATTCATAATCTTGAACAGGTTTATTATTTTGAGCTAAA 299 27 100.0 0 ........................... | ========== ====== ====== ====== =========================== ========================================= ================== 5 27 100.0 40 ATTAGAGTATTACTAAAGTAGAATGTA # Left flank : AATGAATGGGTTTGGGAAAATATCGATGGCGA # Right flank : | # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAGAGTATTACTAAAGTAGAATGTA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [30.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 326-31 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAG01000322.1 Fusobacterium necrophorum BFTR-2 contig0333, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 325 31 100.0 34 ............................... TGGATGATTAGCTAAATCTTCCCTAGCAAATGCA 260 31 100.0 36 ............................... AAATAAAAAATGATAGTGACATTTATTCTTTGTATA 193 31 100.0 36 ............................... TGTAAATCTCGAATATCCATTCCATCTTCATGTACT 126 31 100.0 34 ............................... CATGTTGCCATATACATTCCCCCTTTTATTTTTT 61 31 96.8 0 C.............................. | ========== ====== ====== ====== =============================== ==================================== ================== 5 31 99.4 35 AATTTACATTCTACTTTAGTAATACTCTAAT # Left flank : ACATTCTACTTTAGTAATACTCTAATTTGAAATTTCATTTCTGGCATTTTCTCCACGAAT # Right flank : TTCGATTCTTTTCTATTTTCTTACCCCAAGC # Questionable array : NO Score: 3.03 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATTTACATTCTACTTTAGTAATACTCTAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.65%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 1 262-35 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAG01000378.1 Fusobacterium necrophorum BFTR-2 contig0392, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 261 31 100.0 35 ............................... GGTAATTCAGCAGACACAATAGGATTCTGTTCTGT 195 31 100.0 34 ............................... ATTCAAACAACAAATTCTGAGCTGTCAACTATTA 130 31 100.0 34 ............................... AAGAAGCCTCTCTGCGACTGTTACCAATCGTAGA 65 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== =================================== ================== 4 31 100.0 35 TCTTATAATAGAAACAGAGTGAAATGTAAAT # Left flank : ATAATAGAAACAGAGTGAAATGTAAATTGTTCATATTATGTTTTGCGAAAGAAAGTTAGA # Right flank : TCGCTTCTCATTTTAGACGAGTGTTGGTTTGTATT # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCTTATAATAGAAACAGAGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.42%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [35.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA //