Array 1 83795-83961 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMXS01000019.1 Halomonas qijiaojingensis strain KCTC 22228 sequence19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 83795 33 100.0 35 ................................. TGGGAGTGGCTGGACTCCAGAACCGCCACGTCCAG 83863 33 100.0 33 ................................. CAGCACCGGGGCAGGCCCGGCAATCGAGGTCAC 83929 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 3 33 100.0 34 GTCGCGGCCCGCCCGGGCCGCGCGGATAGAAAC # Left flank : TCAATGAGGAGAGCGCAGCGATGATGGTTCTGGTCAGCTACGATGTCAGCACCTCTTCCGAAGGTGGCGATGGGCGGCTACGTCGTGTGGCGAAAGCCTGCCGTGACGTGGGGCAGCGCGTACAATTTTCGGTCTTCGAGATAGAAGTCGAACCCGATCAATGGGTAATGCTTCGTCAGCGGTTGATCGACTTGATCGACGATGAAGTTGATAGCCTGCGTTTCTATTTCCTGGGCCGGAACTGGAAAAACCGCATCGAACATATCGGTGCCAAGCCTGCCATGGACATGAACGGCCCCCTCGTTTTCTAGCTATCCTGTTGCTCTGCGAACCACAAGTGTCCTGCGTTTCTCTGGCAGGTTCGCAGCTCTTTAACAATCTGTTTTTCTGAATGTTCTTAAGTTTTATTTTGTGTGTTGGGGAATTAGAGCCTTCTGAAAGACCTCTTTCGCTGATATGCGGGTATTTCGCTCGTCTTATCAAAGCGTTATAAAGGAACA # Right flank : ACTGCCAGTAGCAGG # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGGCCCGCCCGGGCCGCGCGGATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.60,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-10.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.01,0 Confidence: HIGH] # Array family : NA // Array 1 82171-79233 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMXS01000020.1 Halomonas qijiaojingensis strain KCTC 22228 sequence20, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 82170 21 67.7 36 ----------..................... AATACCATGGATGCCAGGCAGTCTGCTATGTAACGT 82113 31 100.0 37 ............................... AGTCCTGACGGCGCCCATTTGGCTGTGGCGCATGAGT 82045 31 100.0 37 ............................... AGACGCTGATTGACAATGGTGCGGTCATGCAGCTGGT 81977 31 100.0 37 ............................... CGCGCGTTGTTGTTTGCGTTGGCGCTCCCCCTTGAGT 81909 30 87.1 36 ...A......A.-...T.............. TCTAGGAAGGCATGGCGCCGTTTCGCCAACGCCCGT 81843 30 87.1 37 ...A......A.-...T.............. GGGACGCTTTCGCCCGGCAGACCCTGGACCAGAACGT 81776 31 100.0 38 ............................... GAGCGGAAGAGGGCGGCGAAGCGCTTGAAGAAGAAGGT 81707 30 77.4 38 ...A......A.-..TT..A...G....... AATGTCGCCTAGTACGTGACCGTTGGCATGAAGCGTGT 81639 30 77.4 37 ...A....-T.AT...T...T.......... TACTACCAAGGCGCCCGTTGCCGCGAACGCTTCAAGG 81571 31 83.9 37 ...A...T......A.T.....A........ TACAACAACGGTGTGCTGGGTCCGAACGAGTACATGT 81503 29 77.4 38 .....-.T..A.....T.-.T.........T ACCAGTTCGTCGAGGTTTTGTGCGTTGTCATAGAGGGT 81436 31 83.9 37 .TT.......A.A..T............... ATCGGTCACAATGTAGCCGAGCGCAAAGTCATCGAGT 81368 31 80.6 10 ..T.A..T..A.A.......A.......... GGGCGCGGCT Deletion [81328] 81327 31 67.7 35 ..AT..TA..TGA...T.T....G....... ACGCTGTCGCGCAGGTTGATGTTGTTGCCGGTCGT TA [81312] 81259 31 96.8 38 ....................A.......... GATGCCCAGCGGTTCAAGGAAGCCCGCGACGCCCTGGT 81190 31 87.1 36 ...A.....A.T....T.............. GCCACGAAACGTCGCGCGAGCAAGATCCCCAGTTGT 81122 31 83.9 37 .......T.TA...A...T............ CCCATTTGCGTGCCCATCACAAAGGTGACGCGGTTGT 81054 30 77.4 37 ...A..TA..AT-.....T............ TTCCAGGCAGTCGGTCGTCCGGCAGGTGCGCGGAGGT 80987 31 87.1 36 T.T.......A.....T.............. TACTCCAAGTATCTTGGGGAGACCGAGCGCCAGTGT 80920 31 87.1 37 ...AC...........T...T.......... GACAAGTTTGTCCTCAACGATCAGCGCGAGGCCCTGT 80852 31 74.2 36 .A.A...T.TA.A...T.T............ AGGTTGGAATTGGTGAGCTGTGTCGTCGTATCGAGT 80785 31 80.6 36 ...A.....TT.T...T...T.......... TCCCGAAGCCAGAGCACGAGAGTCGAATCACCTAGT 80718 31 90.3 37 ...A......A............G....... ACACGGCAGAGAAATCACGCACATGGCTGAGCCAGGT 80649 31 83.9 37 ...A...T..A...A.T.............. CTGGTCAGTGTCGGCAAGATGGGCCGTAAGCTCAGGT 80581 30 64.5 37 ...A.T..-T..T.T.T...GT.GG...... ATGAAGTGCGCGAGCATTCGCAGTTCCAGGCCGGAGT 80514 31 71.0 38 ..T....T.TAT.A...A..T..G....... GAGGAATGGCGATCCAGCGAAGAATGCCGAGCCGAAGT 80445 31 87.1 37 ....A.....AG....T.............. ACTCCTGGTGGCATCCACTACCTAGGGGATGACGAGT 80377 30 83.9 37 ..A...TT..A.-.................. AGGATATTGCGGATGCGGTGCTTTTGGCCAGCATTGT 80310 31 83.9 36 T....T.T....A...T.............. GAGAAGGTGTGGGACGCCACGGTGCTGGCCGATGGT 80243 31 87.1 37 ...A........C...T......G....... TCACCGGCCCTCTTTGGGCGGTATCCCCACCACAGGT 80175 31 93.5 37 ...A............T.............. CAGCTCGGCGGCGAGCTGACGGCGCTTGCCCAGGTGT 80107 31 96.8 36 ................T.............. AGTTACCATGGCTTACAGCACCTCCTCGAGGAACGT 80040 31 77.4 26 ...A......A.A...T.T....G.T..... GATGGCATCGCTACCCAAACGGTAGC Deletion [79984] 79983 31 64.5 25 ..AC.ATG.TTGC.....T....G....... GCGCCGTATGTGTTTCTGGCGGTGA C [79966] Deletion [79928] 79926 31 64.5 38 T.G.CGTT.T.....AT..AT.......... ATGCGACAGTAACCCGCAGACTGGTTACGCGCTGAGGT 79857 31 80.6 36 ......TT....C...T..AT.......... AATGAAGTCCCGGCCAGCATGCGGACGCCGGGATGT 79790 31 74.2 36 .....T..AT..CA.T....T..G....... ATGCTGCTGCGGATGCAGAGCTGGCACCCGGACAGT 79723 30 83.9 36 ..T......TGT-.................. TGGTTCCCATTGTTGAAGTTCTGGACTCAGGCGTGT 79657 30 74.2 35 ...A...T.-TA....T...T......C... CAGAACAAGATTACCGAGTCGGTTTACACCCTCGT 79592 31 100.0 27 ............................... CCATTTGCGTGCCCATCACAAAGGTGA Deletion [79535] 79533 31 71.0 34 ....TTTGT.G...C.....T.........T GAGCGCAAGGCCTGGTGCCAACATCAATGAGAGT 79468 31 74.2 37 ...A....ATAT....T...T......G... GCCGTAATAGTCGATTTGCTGTGGCCAGTTCATGAGT 79400 31 90.3 37 ...A......A.....T.............. CAGTTCAAGACGACGCAAGAAGCAGCTGAATGGATGT 79332 31 90.3 38 ..........T....TT.............. GAGTGGCTCCAGGACGATGGCCGCAAGCAACCTCACGT 79263 31 93.5 0 T...................A.......... | ========== ====== ====== ====== =============================== ====================================== ================== 45 31 83.2 35 CGCGGCCCGCCCGGGCCGCGCGGATAGAAAC # Left flank : G # Right flank : AACGCGACGTGGAAGCGGCCGGCACCGCCGTTCGGCCTACGCCACCGTTCGACTTGTGCTGAAGCCCAGACAAAAGAAAGCCCCACCGACAGGCGACGGTTGGGCAGAAACGAGTGGTATAGTTGCTTCAGGTGGTCGCGACCAGCCGTTTGACGGCGGGCTGCTCGCGCTGCTCGGCCTGCCACAGCTCATAGGCCGACTGCAGGGCCATCCACTGACGTGCCGTGCTGATCCCGGCGCGTTCCAGGCGCACTGCTAGGTCGGGGCTGATACCGGCACGTTCGTTGAGTATGCGCGACAACTGAACGCGGGTTAGTCCTAGATGCTGGGCGGCTTCGCTCACGGTCATACCCAGTGCCTCGATGACATCCTCTCGCAAGATCTCGCCGGGGTGTGGCGGATTAAACATGGCCATGACTGTATTACCTCTCACTGTATCAATGTTGGCCAAGGTGGACCTCTTGGGGCTAGTGGTAGTCTTCGTAATTCACCAACTCCAC # Questionable array : NO Score: 4.50 # Score Detail : 1:0, 2:3, 3:0, 4:0.16, 5:0, 6:0.25, 7:-0.05, 8:1, 9:0.14, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGCGGCCCGCCCGGGCCGCGCGGATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CGCGCCCCGCACGGGGCGCGTGGATTGAAAC with 85% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [40-30] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [31.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //