Array 1 16495-14043 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHOLY010000019.1 Erysipelatoclostridium ramosum strain MSK.14.52 NODE_19_length_70354_cov_95.9005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 16494 30 100.0 35 .............................. CAGTTAAAGAAATTTATCAAAATGGCAACGATATC 16429 30 100.0 35 .............................. GGTAATGAATTTTTAATTCAGGCACGCAAGTGCTT 16364 30 100.0 35 .............................. ATAATATCACGAACTTCTTTTTCGCATTGTTCGGC 16299 30 100.0 34 .............................. CCTTTAATTAACTTATTAGCATTGATTGAAATAA 16235 30 100.0 35 .............................. ATCGCTTTATAGATATGGTTGCAATCAACGATACG 16170 30 100.0 36 .............................. ATATGTCGCGGGTAATTTATCTAATTTAGGCTTACC 16104 30 100.0 34 .............................. GTAATAGCAACGATGAGCAGTAATAACAAATCAA 16040 30 100.0 36 .............................. ATTATTTTTTCAACATCCTTACCACCATTCGGATAT 15974 30 100.0 35 .............................. AACATATGCTATACCTCCTAAAGAGAGTATAGCAT 15909 30 100.0 36 .............................. AGAGCCATGCATAATTGAGGGAAAAAAGTTTTGTCC 15843 30 100.0 36 .............................. TTCATGGCTACGTGAAAGAGAAGCCATCTTATAAAC 15777 30 100.0 37 .............................. AGATCTGTATATGAGCTTTTTATCGGTACGGTTCCCG 15710 30 100.0 35 .............................. TTCAATAAATCATAAAAACTACTCTTTGAAAAGCC 15645 30 100.0 34 .............................. GCGATATAGATATATGTATTTATGTCCAGTCCAC 15581 30 100.0 34 .............................. TTGCCTTTAATAGTAATCTGTGGAATAGTATACG 15517 30 100.0 36 .............................. ACTTCCATTAGTGCAGCATTTTGAAGTTTTAACATT 15451 30 100.0 36 .............................. TTATATTCTTCGTATTCTTCTATGATAATTCGTTTA 15385 30 100.0 36 .............................. AAATTATAAGGCAAAGGCTCTCCGCAATTAGGACAC 15319 30 100.0 37 .............................. GTTAGATCGCGGGATTTTGGCAGTTCGTTACATCCAA 15252 30 100.0 34 .............................. CTAATATTTCATCTTTTCTAATCTTTTTCTTTTC 15188 30 100.0 37 .............................. TTTTTTAGTTTTGTTAAAGAAGTATTTAAAGGCTGTA 15121 30 100.0 36 .............................. TATACGTTGTTTTCAGAACCACTATTAGACAATAAA 15055 30 100.0 36 .............................. ACTTGTCATAGTCATCAATGGACGGATATTGAATAC 14989 30 100.0 34 .............................. GATTGCATCTTATAACCTTGTAACATTGCACGAG 14925 30 100.0 37 .............................. GCGGTTAAATTAAGATTGTTTTGTGTTATTGTACTAA 14858 30 100.0 36 .............................. CCCCTTTCGTGAGTTAACCCCTCAAACCTGTATACC 14792 30 100.0 34 .............................. GTATCCAAAATCTTACTATGACGATTTGCTCCAC 14728 30 100.0 36 .............................. TTGACGTAGTTCTTGAACTCTTTTAATTCACTGCCT 14662 30 96.7 36 ..........................T... ATTGAAAAATGATACTAAATATGAGCGTGTTAAATG 14596 30 100.0 36 .............................. GCGGTCTTTAAGCAGCTCCTTTGTAAGTTCGCTCAT 14530 30 100.0 36 .............................. TGTTTTTTTGCATCTGTACTAAGCTCTGCATATGTC 14464 30 100.0 35 .............................. GCAGTCAATCCCGCATGGCCAACCGCACTACCACC 14399 30 100.0 35 .............................. GTTGTAGAGCCCTCTTGAATATCTTCATCATTCAT 14334 30 100.0 35 .............................. GAAACAAAGGGTACTAGGTGAAGCTGTCGACAAAA 14269 30 100.0 35 .............................. TATCTAAGACTTTAATTGCTTTTTCTTTGGTTGAA 14204 30 100.0 35 .............................. CTTTCATTTAAATTTCGACATTGCAGTGTCGATAA 14139 30 100.0 36 .............................. AACATTTCTTTAGCGCTTAATTCTTCTATCATTTTA 14073 30 73.3 0 .............GAG.T..TA.A.....A | G [14048] ========== ====== ====== ====== ============================== ===================================== ================== 38 30 99.2 35 GTTTAATAACAACATAAGATGTATTGAAAT # Left flank : AAATTATTTATACCATTTTCTATAAAGGATAAATATTAATGAAAATAAAAAATCATAACTATGTAATCGTCTGTTACGATATTGGGGAAAAAAGAGTAAATAAAATATTTAAGATATGTAAAAAATATCTTCCTCATTATCAATATTCTATTTTTAAGGGTCCTATTACCCCTTCTAAATTAATTTTATTAAAAAAAGAACTAAAAAAAGCTATAAACAAAGAAGAAGATTGTGTAAGTATTATTAAATTACAGAGTGAGGATTCATTTGATGAAGAAATTTTAGGGAGTCAAAAAGAGGGAAATGAAGATAGTTTAATTATATAATTTACCAGGCTCAATTTCTTTTTAATGTCCTAAAACTGTTGGGAGAGTAAGCGTTTAAGAGAATTTTACTAGCAATTATAAAAAAGTAAAATCATTTGGTAAAAAAGTAGAAAAGTATTGATAGATATAGGTTTTGAGGTATAATAGAAAGTGTAAAATGGCTTATTTACTAGG # Right flank : AACATGACTATTTTGTTCATATTACTATTAATAAAATATTTTTTTGTTATAATAAAAGTAAAAGTAAGTAGAAGTGGGGTAATTATGACAAATAAGTATAGATTAAAAATAATATATAAAGATACTAAATTGACATTAGACATTGAGGAAAATATTACTTTTGATGAATTAAGCTCAATTATTAATGAAAAATTAATGCTAAGTGATTCGAGAGCTTATAAATATCAAAAAGATGATGATATTATTGTTACAAGAAAAAATAGTAAAAACAATAAACTAGCAGATCTTTTAGAATTAGATCAGAAGTTAGTTTATATTATTGGTACTGGTAATAATGTTTATAGTATTAATATCATCGTTTGGGACTACATTATTGAAGCTGATAAAAAAATATTAGAGAAGTTTAATCAAATGTTGAAAAATGTCAAACAAGTACGTCCTGAACAAGTATATTATTTAAATAGTAGTCAAAGAAAGTTTATTGACGGTCTTTTGGCTGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAATAACAACATAAGATGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [86.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 2 25775-25360 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHOLY010000019.1 Erysipelatoclostridium ramosum strain MSK.14.52 NODE_19_length_70354_cov_95.9005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ============================================================================================================================================ ================== 25774 24 100.0 78 ........................ GTTTAAATTTTTACTTCTTGTTCTGTTATTTTTAAATTTGACTAATTTCACGTTTTTGTGTATTATATAATAGTTAAA 25672 24 87.5 39 C......G..T............. TTAGAAAGAGTTGATTATTACGATCGCTTATTTAATTAA 25609 24 100.0 39 ........................ AAAAAAGTCTATTTAATAGACTTTTTTATTTGTCGGGTT 25546 24 83.3 140 .......G..T...........TG AAAATAATTAATTAAATGATCCAGTAATACTAATTAGGGAGTATTACTGAATAATATTTGATAATTTTTATGATATTATTGATTTTTTATTTTTTGTATGTATAATAAATATTGTAATATAATTTTCATTAGATAGAGTT 25382 23 79.2 0 ..TT..T....-..A......... | ========== ====== ====== ====== ======================== ============================================================================================================================================ ================== 5 24 90.0 74 TAACAACATAAGATGTATTGAAAT # Left flank : TGATTTTTGCCCAAGAAGATGAGGAACAAATTTTACCAGTTACTAATTCATTATTTGAAAGTGAAAATAACTTAGTTGTTAGTGCAATCAAAAAGAGTGAAGATGGTGAAGGATATATAATTCGTCTATTTAATGGTAAAGATCATCAGGATATTGGTGATAAACTAACTTTTAATTTTGATATAAGTGAAGCATATTATACTAATTTAAAGGAAGAGAAGATTGAGCAAATAAATGTTGTTGATAATAGTGTAGTAATTAAACCAATATCACATTGTAAATTTATTACATTATATATAAAATAGGTAATAATTACTCTATATTTTACTAGGTACAATATAATTAAAAAGGGCTTAAACCATTGTGAGAGTAAGGCTTTATAGGATTTAAACTGGAAATATACATAAATCATAAACAGCTAATAAAAAACGTAAAAAGTTTTGATATATAGGTTTTAGGTTATAATGGTATATGTAAAATGGCTAATTTACTAGGTTTAA # Right flank : TGACATAATTGTTTATATAATATTAAAAAGGAGTAATTATTGGGATGAAGAAGAACGAGATAAATCAAAAGAATGGACCTAATATTAGTATAGGAGGTGATATAATTATTAATTTTAATAATCGTCCAAAAAGGGAATCTTTAATTGGGCTGATTGCAAAAATAATAAAAAAATATTTTACCTAAAAATAATAACAGTTAATTTTTGTTGTTATTAATGTAAGCGCTTTTGCTTATGGGATAAATATATATTATAATAAAAATATGTAAAAAATTGGAGAGTATGGATATGGATGTATATGAAATAAAGATAAAATTATATTTATTGAAAGATATAAAAATTGAAGAAACACAGACTTATTTAGCATACTTTATTGATAGTGTAATGGTTAAAGATAATATGTTTTTAGGTATACATGAGACTAATCAGTATAAGTTTTATACCTTTGATAGTTTGTATCCTTTAGCTAAAAATGGGGTTTATCAAAAAGATAATTCGTA # Questionable array : NO Score: 5.47 # Score Detail : 1:0, 2:3, 3:3, 4:0.50, 5:0, 6:0.25, 7:-3, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TAACAACATAAGATGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA //