Array 1 1175433-1174373 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP068729.1 Helcococcus kunzii strain H10 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1175432 36 100.0 26 .................................... GTTCTAAAAGCTTTTCCATCTTTATA 1175370 36 94.4 27 TC.................................. AGATAGAGTAATGTTGGAAGATAAAGA 1175307 36 100.0 29 .................................... TAGTATTATTTGACTACTATATTTATTTA 1175242 36 100.0 28 .................................... CCATACTTTCCTCGCTTACCTTTTGGAG 1175178 36 100.0 28 .................................... TACCACCGTATCCAAGCTTCAAGTTATC 1175114 36 100.0 29 .................................... TTGTTAGTCTTAGCCATTTAGTCGAAGGA 1175049 36 100.0 28 .................................... CCACCACAATTTGAACAATACTTATCAT 1174985 36 100.0 29 .................................... TGAATCTCCACTTAATACCTTACTGATAG 1174920 36 100.0 27 .................................... CTCATCATACGCCTCTATGTAAATCTC 1174857 36 100.0 27 .................................... ACTTGCTACAATGTGTAGCTATTGCGT 1174794 36 100.0 29 .................................... GAAGTAGAGTATCAATTACTGTCTAATAC 1174729 36 100.0 28 .................................... TACCACCGTATCCAAGCTTCAAGTTATC 1174665 36 100.0 29 .................................... TTGTTAGTCTTAGCCATTTAGTCGAAGGA 1174600 36 100.0 27 .................................... TCTCACGTGCGACAATATTGTTCACAT 1174537 36 100.0 30 .................................... GGAAAAGGAGACTTTTATGAAAAAAAACAA 1174471 36 100.0 27 .................................... TGCTCCACCTGTAGTTTCCTTATTTAA 1174408 36 91.7 0 .........................T....T..A.. | ========== ====== ====== ====== ==================================== ============================== ================== 17 36 99.2 28 CTTTAAGAGATACTATTAATTTCTACTATTGTAGAT # Left flank : CAATAGAGAAGATTTGTTTATGTATGTTCAAAATTATTATAGAGCATTTATGAAAAATAAAAATATCGTCGATTTTCCGGTATATAAATTTAGGTAGGTATGATATGTTATTTGTAAGTTATGATATTAAAGATGATAAGACAAGAACTAGATTTTCAAAATATTTGAGTAAATACGGGTATAGAGTGCAATATTCCATTTTTTGTGTGAAAAATTCAGATAGAATATTAAATTTGATTAAAGCGGAAATTGAAAATAAATTTAAAAAACAATTTAGGGAATCTGATAGTGTTATGATATACAAAGTTGATAAAAATAGTATTATTAATTATGGGTATCCAATTCACGAAAATGATGATATAATTATTATATAAACCCTATACTTAATATAGAATTTCTTAAAGGATATCTAAAAATGTATTCATTAAATGAGAGTTTATGCATTGCAATACTAACTATAGTGACATTCTGAGCGCTTGTATTGAATATATATGTATTAG # Right flank : CCACTCGAAAAAAATCTTCTTTTTTTATCAAAACAAAACAGTTATGTTACCTTTTAGTAACAAATTTGTTACTTTTGTTACCAAAACCATTGTGTTATTCTCCTATGTGGTATAAAATATGAATAAACGCTATTATTTTACTATTTTATGCAAGAGGGGAAAAAATGAATTATAAAAAGACTTTATTATTGTTTTCACTTACTATTTTAATGATTATTTTTGGAGCGGGATTTAGCAATGCTGCTAATTTAGATACAGCTGAAGAGTTGCCAGAAAAGGTTTCAGGTGAAACAATAAAGGAAAACAAGACTGAGACTTTAAACGAATCAGTTGATGAAAAATCTAACGAAACTTCTATTGAAGATACATATAAAGAAACTGAGACCGAAGAAGAGATAAATGCGGTAGACTCAAAAGAGGACATAACAAGAAAAAATACTATTGAAGAGTCTACAACAAATACTGAATCATTTCAAAATCAAAATAGTTTTGAAATATCT # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAAGAGATACTATTAATTTCTACTATTGTAGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.30,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 1646716-1645954 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP068729.1 Helcococcus kunzii strain H10 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1646715 36 100.0 30 .................................... CTTCATGGGCGTTGGTTCAGATTTGAAGAT 1646649 36 100.0 30 .................................... ATACTTTATATTATTACTAGTGATAGTGAT 1646583 36 100.0 30 .................................... CTGTCAAAGTTATCAGAGTTTACTAAGTTA 1646517 36 100.0 30 .................................... TAGACAGTAGTGAAGTGAGTATTATTATTA 1646451 36 100.0 30 .................................... AATTGAGTATTTAACTCTCCAATTGCTCCA 1646385 36 100.0 30 .................................... TAGATGTAGTTGCAAATTTCGCAGATTATA 1646319 36 100.0 30 .................................... TGGAAGATAAAGACAATACGCCTGAAGATA 1646253 36 100.0 30 .................................... TCTTCTGATACTCTAACTTGTCTTCCGTCA 1646187 36 100.0 30 .................................... ATTCTTGTTGAGTCATCCAGTTGTAGTTCT 1646121 36 100.0 30 .................................... TCAAGTGTAGGTATTATAATCACATTATTT 1646055 36 100.0 30 .................................... AAAATTAGAATTAATTAAATATGATAACTT 1645989 36 86.1 0 ..................C......T.......GTA | ========== ====== ====== ====== ==================================== ============================== ================== 12 36 98.8 30 GTTTGAGAATGATGTAATTTCATATAGGTATTAAAC # Left flank : AACTACTTTCAAAAATTATTAAAGATCTTACAAGTATGTCTAAAGATGAATTTAATTATGCTAAGACAATGTCTATTAATCAAAATATTCAACAATATATGAATGATTTGATTTTTGAATCAGACTATCCTTTAAAAATTAGCGAAGAATTTGACTTTAATTATTTAGCTAAATGTTTGAAATTAGAAATTATTGAAGATTATGATAGTTTTATAGAACAATTGATTTCATATCTTGATCTTTATTTGATGATATTAAATTCAGATATCTTTATTACATTTAATATTACACAAATATTGGAAAATGAAGAAATTAAAGAGCTTATTGAATTTGTTTATAAAAAGAATATTTTACTTATAAACTTTGATATAATATATATGAATCAGAATCTTATTAAAAATCAGTTACTTTTTGATAAGGATTTATGTAGAGTATTATAAAAACTTATATGCAATTACACATTATGATGGTGTTTATCATTCTTACCCCATGGATTTGGG # Right flank : AATTTAATTATCTTTTAAAAAATCTATAATTATAACTGAAATAGAATAAAATAATATCTCTAAATATTTCTATTTAAAATAAATATATAATCCAATTCAAACTCATATCTCAGATTGTTTTATTTCTATTCTTAGAATCTAATATTTTATCTTTTCCTATTATATCAATCCTTTTTCTGGGTATAAATTAGCTAAATAAACTTTAATCTTTTAGGAGAATTTCTATGTTTCAGAGTATTTTAATAAAATTAATCATCGGATATTTAGCGTTATTAGTAGTTGTAAGGATAGTAGGGAAGAAGTCTTTATCTAAGATGACACCACTTGATTTGGCTTATACTATTGTTTTGGGCGGAATACTAGAAGAAGCTATTTATGAAGACAAAGTAGGAATTAAAGAGATTTTGTTTGCTTTATTTGTATGGGCCTTTGTTATTTATATTTTTGAAGTTATCATGAGCAATTCTCAGTTGTTAAGCCGTATTTTGCAGGGAAAACCG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGAATGATGTAATTTCATATAGGTATTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: R [matched GTTTGAGAATGATGTAATTTCATATAGGTATTAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [88.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //