Array 1 657705-658159 **** Predicted by CRISPRDetect 2.4 *** >NZ_UKRO01000001.1 Klebsiella pneumoniae strain EuSCAPE_IT197, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 657705 28 100.0 33 ............................ CGATTTACCTCTTCCACCCGCTTGGCGGGAAAA 657766 28 100.0 33 ............................ TGGTCATCGCGCCCCTTGGCCTGCTCTGCGCTG 657827 28 100.0 33 ............................ TGCGCGATATCCGCGCCGCGTTAGCGATGTGGT 657888 28 100.0 33 ............................ TTGTCTGGGACAGCAAAGGACGCCGTAACGAGG 657949 28 100.0 33 ............................ TCCTTCATTAAGTGAGCAATTGCTTCCTTTTTT 658010 28 100.0 33 ............................ CCTGCAGCTGGTCGTCGAGCTGACGGATGCCGG 658071 28 96.4 33 ..............T............. TTCATCACGTGTGAGCGGATTTGGCTCTATCCT 658132 28 92.9 0 ...................A.......T | ========== ====== ====== ====== ============================ ================================= ================== 8 28 98.7 33 GTCTTCCCCACATGCGTGGGGGTGTTTC # Left flank : TTAGCGTTGGCGAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGACTCGACGGCGCAGCGCAGGATAACAGCCTCCAGCTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGCGGTAACTTCGCGAAGCCACGGAAGGCAAGCGCCAGGATGACGCGCTACGTTCTGGGGATGACAAAAGCGTTTTACCCCCGGCTGCGGGCCGGGCAGGCCAGTAGGGTAGACCGGTCCAGGTCAGCAGCAAATCGACGGTGGTGATATGGGGACATACTTTTTCGTTTGATGAATGTTGATGCTGATGCGGAAACCCTGCGGAGCGCAATTGTTGTAAATCTGGCGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : TCGCCTTTCAAGTGTCGACAAGTCACGTCTGTGCGCATTTCTCAGATGAAAGGGGATTCCTGACGTAGAGGCATCAATGCCGTGACATAGTTATCCTTAATGTACATCAATGTCTTCGAAATTTCGTTTGGCCAGCACAGTCTCATATGTTTTTTGTATGATTTTACTTATAAATATTCGTGAACTATGTTTGTCCTATACTTTCTTTAGGGGCATCTAAATCATTCGAGTTTATTACTCGTCTGGAGATATTGTTCTTCATATTAATTATTTATAGCTTTTTATATTATTATTTTTGGCTTTTATCTTTAATTCAGTGTGTTGTGGATGTTTTTGATTTTATAAAAAGTTATTTATAAGTTTCCCGGTTTTTAGTATTAATAAAGGGCACATGTTTTTTAAGGAAAAATTCCATGAGGCGCTTGATCAGGGTTTCGCTACAAAATCAACATGCCATCGCGGCGATAAGTTTTGAAAACTGTCCAGCGAAAACCCGGATG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACATGCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 666913-668404 **** Predicted by CRISPRDetect 2.4 *** >NZ_UKRO01000001.1 Klebsiella pneumoniae strain EuSCAPE_IT197, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 666913 28 100.0 33 ............................ TACGTCGAAAACGAGCGTAAAACAGGTTTCATC 666974 28 100.0 33 ............................ TAGATGGATTCCTGGGTATCCCCCCAAAACAAA 667035 28 100.0 33 ............................ CTTTCTCGACGGACGATCCCGTTTACCTCGTTG 667096 28 100.0 33 ............................ TGACGCTATTTTTTGCCAGGACAACGGCTATGA 667157 28 100.0 33 ............................ TTACGTGATCGATAGCGGGCTGTCATATAGCGA 667218 28 100.0 33 ............................ TCTTTATGTCCGCTTGCGAGGCGATCAGGGTCA 667279 28 100.0 33 ............................ TGTTGTTTATGTGCGCCCCTTTACGGCGGAAAC 667340 28 100.0 33 ............................ TCGAGTTGCCAGCGCGCCACGCTGATCCGCAGG 667401 28 100.0 33 ............................ TCGTGGATCATTTTGACTCCTTAACTTCACGTA 667462 28 100.0 33 ............................ TGGCATCCGTGTAACGGGAAGCGGCCTTGCGGA 667523 28 100.0 33 ............................ CACCCTGCGTCGCTGGTACTGCCGCACGCAAAA 667584 28 100.0 33 ............................ CGGTACTATTTCGAAAGTTTCGACGCCGGATTT 667645 28 100.0 33 ............................ TAGCAGTGGGCTCCGTTGCTCTTCCCCGGTCGG 667706 28 100.0 33 ............................ TCGCGTTTTATGTGGTTGTCGCTGTACCAGCGC 667767 28 100.0 33 ............................ TACCGTGAGGTCTCCAGAGCGGGCGAAATCCTC 667828 28 100.0 33 ............................ CCCTGCTGAGCCCACTCGCACACCAACACCGAA 667889 28 100.0 33 ............................ TGCAAACCAGTTTCCCGGAAATATGAATGACGG 667950 28 100.0 33 ............................ CAATAAACGGCATAAGCCGGAACGGATCGCGGT 668011 28 100.0 33 ............................ TCTCCTCGTCCGGTGTGTCTGCCAGTGTGTCAT 668072 28 100.0 33 ............................ CAAAAAGCGATTTTTTCGCAGCAGGGTCTTGCA 668133 28 100.0 33 ............................ TCGCCAGCGGCTGCACAAGTCTGACCAAAATCC 668194 28 100.0 33 ............................ CCCAAACCCGCAGCGCGCACAAAAGCTCGTTTA 668255 28 100.0 33 ............................ CAGCTCGCTGTTCGGGTTTGACTGACTGATCGC 668316 28 100.0 33 ............................ CAACAACACGGCATCCCGCGACCTGCTGAATTT 668377 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 25 28 100.0 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAAGAACGGCTCTGTATTGATTTGGCATTTTCACTCTCGAGGGAAATGGCGGGCCGCTACGATAAACACAAAGTCTCTGAGGCATTCAGAAAGCGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTCCGTGGACGAATGAAGCTGTGGTTTGTCGAACCACGGCCAAATTTTTTTGTCTCAGGCGTCAAAGATTCGGTCGCACAAACCGTTGTTGATTACCTGTTGCAGTACACGCCTGTGGAATCAGGCCTGTTGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGATATTAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAACTCTCGCTCTTTCACAATATGTTGGT # Right flank : CTTATGAGGGGTCTACCAGCATTGGCGTACTGGAGTCTTCCCTACACATGTGGGACTTAGCAATAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTTAAAATAATTTTTAGCTAATGAAACTGTCGTTTGGGAGAGGTAGGAATATTTTATTGCGAAAGAGAAGGGAACTGTTTAAAGCAATAACGGCGAATGATTCTTATAAAATGAAGGATAGGGAATTCATATGTTTCGACTTTACCAGTCACATGATTTAATACGCCAATTAAATCCTGAAGACTTTCAATATATTTTGACACCAGCAGGTTCGCTAAGAGAAGCGTGTATACATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCATTTGGCCTACCGAAGGAAATATACAACTCATCTCCACATAAAAGGCCCTATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTATGATGAGGTAGAGCACAGGCTACAAATTGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //