Array 1 54008-52484 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARVO010000008.1 Listeria seeligeri strain FSL L7-0925 NODE_8_length_110392_cov_72.234746, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 54007 29 100.0 35 ............................. AGTTTTACGAGATGTTCGTTATTTCTGTCATCAAC 53943 29 100.0 36 ............................. CCATTTCCTTGATAATTACCAACGCCATTTCAATTT 53878 29 100.0 37 ............................. TAGCCAATTTGGGCTAGGAATTCAGCCGGGGAAAGTC 53812 29 100.0 34 ............................. TCAATCACCTTATATAATCGCAATGCTTCTGCTT 53749 29 100.0 37 ............................. ACTTTCTTATCATTATTTGTTTTTAGTACTGGTTTTC 53683 29 100.0 35 ............................. AGATACTAAGGTGCGTGGGTGGCTATGGGAATCAT 53619 29 100.0 36 ............................. TCCTTATCTATTTATATTTTGTGTTCCTTTACTATA 53554 29 100.0 36 ............................. AAAAGAGGAATAGACTCTAAAGTTTACATTTTTAGG 53489 29 100.0 36 ............................. GGTAATGGATTCTATTGAAACATCGTATTTAGAACC 53424 29 100.0 38 ............................. CAATCTAACATGGTGTGCCTTCGCAAAGTTGCCAACAC 53357 29 100.0 35 ............................. GACGAAACCGACAGCCTGCTAGAGAACATAGCAGA 53293 29 100.0 36 ............................. GAAATAGTCTTCGTGTTCTTCCGCAACGTCCTTGAC 53228 29 100.0 37 ............................. ATCGTCACGGTTTGAAGTGCTTTAGTCAACGAAGAAT 53162 29 100.0 34 ............................. TTGTGCGAAAAACACAAACAAGATTTAATTTTAC 53099 29 100.0 37 ............................. TTTGTAGGGATTGCTATCCTTCCATTATTCCCGTTAT 53033 29 100.0 37 ............................. AATTGAGGGCCTAGTGGGGTAAAACCCGTGGAGGTTC 52967 29 100.0 37 ............................. CATTACAAATTTCGCACATTATTCCGCCACCTCTTCA 52901 29 96.6 35 .......C..................... GACGCAGGATTTGGTAAAGGCGTAGGTACACGCTC 52837 29 96.6 38 .......C..................... ACTGAATTGGACTTCGAACTCTTGGCCTGTCAAATAAC 52770 29 96.6 35 .......C..................... TATTTATTCAACCTCCATAAGTCCGCGCGCGGTAT 52706 29 96.6 35 .......C..................... ACAGCTTTGTGTGTTCTTTCTTGGTGTCCAGTAGT 52642 29 96.6 36 .......C..................... TCAGGAGTGGTAATGTCTTCTGTTGCTACCACATCA 52577 29 82.8 36 ..A....C....C........TC...... GTGGTCAAAGCCTTCTTATTGCCAGCAGGTGAGCCC 52512 29 75.9 0 .......C.......CA.....CA...CC | ========== ====== ====== ====== ============================= ====================================== ================== 24 29 97.6 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : CTTCAAGATTTGGTGGTGAATATATGTATGTAATTTTAATTTATGATATTTCTGTGGAAAACGGTGGGGCAAAGGTATGGCGCAATGTGTTTAAGATTTGTAAGCGATATTTAACACATGTCCAAAAGTCTGTATTTGAAGGTGAAATAACGCCTTCTCTTTTAGCGAAATTACGGATGGAGCTAGACAAATATATTCGTTCAGATATGGATTCAGTGATTGTCTTTTCCAGTAGGCAACAAAAATGGTTAGAAAAAGAATTTTGGGGACTGGCTGATGAAAAAACGTCGAATTTTTTCTGAATAAATATTTCTGTCGACCTCCAGTAGTGCAAAAAACACTGGAGGTCGACAGAAACGTGGGAAGCCTTGGGGGAGAATGGTTTTTGGTGGATTTTCTTGTTTGAGGTGAGAAAATAAAATAGGTTTTACCTGCTTTTTACGGCGGTCGACAAAAACAAGCCCGTGAGGTAAGATGGGAGTAGGGAAAGAATTTGGCGG # Right flank : CCACCCACCCTTAAAGCCAATAATCTGCTCTAAGGGTTTTTTATTCAAAAAACCACCCCCCAACCCTCCATTTTTTTCGTCCAGCGAAAACCGTTTTCGAAATACTTGTAACCGCTTGCAAGGGTGAAGCTCTATAACTATAATGAACGTAGTAATTGAGTCAGATATAATATTTTTTCAAAATTAGCTAACTGAAGAAATAGAAAACGGAAAAATGGGAATATTTAATCATGTTTTCATTTTAATCTAACAAAAAGGAGAGCTTAAGTATGAAAAAAATCGTATCAATCGGTTGTATTGTGGGACTTTTAATGCTTTTAGTGGGGTGTGGAAGTGAAGAAGCATCGAGTTCAAAAGTAGAGTTTTACACGGATAAAGGTGGAGAAAATGTTGGTATTTTGAATTCTATGTCAGATCAGATTGAAAAAGATGGAGGCGTTGGGTTTAAAACAGTGGGGTACACAGATGTGACTTCATATGAGACAGCGGTGCAACAGTCA # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 65814-62606 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARVO010000008.1 Listeria seeligeri strain FSL L7-0925 NODE_8_length_110392_cov_72.234746, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================== ================== 65813 29 100.0 35 ............................. CCAGTTTCGGGTAGTTATGCACAAGACGGTTGTTA 65749 29 100.0 35 ............................. ACAGCCTTTATCACAAGTTGGATGGAGCTAGCCAC 65685 29 100.0 35 ............................. ACACTTACACACCACACCAAAGTTAAATGCCGTAG 65621 29 100.0 36 ............................. CTCAATAAGCTCTCTTTCTGTGAAGGTCACTTGGTG 65556 29 100.0 34 ............................. TTGCTTTCAGAGGTGAGAAAAAACATGCAATCAA 65493 29 100.0 37 ............................. GTGGTCAACTTAAATGATGGGACACCAGTTAAATTTC 65427 29 100.0 36 ............................. GATAATTCTTGATCTAGCTCGTCCATTCTTGATTGG 65362 29 100.0 36 ............................. ACCATTATCGAAGCTGGAATCCAGATATTGATGGCA 65297 29 100.0 38 ............................. GCACAGATTAGACAGATTACCAATGCCAAAGTACAAGG 65230 29 100.0 35 ............................. TTGTTCATCTACAGCATAAACTAGGCGACAAGAAA 65166 29 100.0 37 ............................. CCGCTTTGTGGTAATAGCTCTTGACATTTTCAAATAC 65100 29 100.0 36 ............................. ATATGTATCTTGCGAAAAAACACGTAGATGCATTAC 65035 29 100.0 36 ............................. CGGATTAATCAATTTGGCAATCGGTGAAAACAAAAT 64970 29 100.0 35 ............................. TGCTTTTCGCGATAGTTTTCTACCGCTTCAACTAA 64906 29 100.0 36 ............................. TAATGTGTCAAGAGCTGCTAGAGAGTCCGGATATTC 64841 29 100.0 34 ............................. GCTTTTCAAAAGAAAATCCCGCTTATTGAAACAG 64778 29 100.0 34 ............................. GCTTTTCAAAAGAAAATCCCGCTTATTGAAACAG 64715 29 100.0 37 ............................. CAGAGTACTTACTTATTCGCACATGAATTTAGCAATG 64649 29 100.0 38 ............................. TAAGCGAGTGTCCAGCGTGTTCGCTATGTCACTTAACT 64582 29 100.0 36 ............................. CATTGTAAAGCGAAATTAACTTTGTTCGATGGTGAC 64517 29 100.0 35 ............................. CGAAATACTCTTTATTTAGTCTCATTGTCCTAACT 64453 29 100.0 37 ............................. TAAAAATACCTGCCTTAAATTTATTTTATGTACTTCC 64387 29 100.0 38 ............................. GCGATTGAAATTGTGAAAAATCGTAAATTAACGGTACG 64320 29 100.0 34 ............................. AAACCTCGAAACGAGAAAAATCGGCAACTTTGGC 64257 29 100.0 34 ............................. CTTGTTTTTCTTGGGGCATCTTTCTACTCCTTTC 64194 29 100.0 35 ............................. TCAGTAGATTCACTAATTCTTCTTGTGTGTAATCA 64130 29 100.0 36 ............................. ATAGCTCAGTATAGATATGGATATATCTACGGAATA 64065 29 100.0 36 ............................. AAACATTAAAAGGAGTGGTTAAAATGAAAAAAGCAG 64000 29 100.0 37 ............................. TTACCTCAAAGTGGCAGATGGTTTTATGGGGTATATC 63934 29 100.0 36 ............................. ACGAATTATTGGACGGCTGGCTGACCGTGATATGAC 63869 29 100.0 35 ............................. GAAAGTTATATCAGTGAATCAGTAGTAGAATATGA 63805 29 100.0 37 ............................. TTAATTCGTCAGTTAATTCGCCAGTTAATTCAATAAC 63739 29 100.0 35 ............................. CAAGGTCACCAAAGTTCCATTTCGATAGGTCGGTA 63675 29 100.0 42 ............................. TGGTTACTGTCAGTAATTGAACCTGTTTAGTATCGACGACGT 63604 29 100.0 36 ............................. TCGTCCCAGCAATCATCAACAATTAGCGGATTTTCA 63539 29 100.0 33 ............................. AAGCTTAAATCTGAAACATTCCAAGAACCATCA 63477 29 100.0 36 ............................. ACACTATCTACGTGGTGTATTTCACCTCTGCGACCT 63412 29 100.0 37 ............................. AGACCAGACCAGTTCATCACAAACAGTCCGGTCGTCC 63346 29 100.0 35 ............................. TTCAATCACCTTCTTTCTTGTGTATCGACTTTATT 63282 29 100.0 36 ............................. CTAAATACGCCAGAAATGACCTGCCAGATGCCTTTT 63217 29 100.0 35 ............................. CTATGATATCTTCAAGGGCATATCTACATGTATCA 63153 29 100.0 35 ............................. ATTAGTTGTACTTCATTCATTTTCATGATAATTCC 63089 29 100.0 36 ............................. ACTAATCAGCCCTATAATGATATCCCGACGACTATC 63024 29 100.0 36 ............................. TGACATCACCCGTTAAACCCACCACAACATGTCCCC 62959 29 100.0 35 ............................. TCTGGTAAATCGTCCATGTCAAAAGGTAGGTCTAA 62895 29 100.0 37 ............................. AAGTTTTTCCGGTTTTCAGCAACGATGACTACGAAGA 62829 29 100.0 38 ............................. AACTTTTTCTGCTGCCTCATTTGTCATTTTGCACCTTC 62762 29 100.0 35 ............................. ACGACTAAATACGAATCAGCTAGGCATCAAATGAA 62698 29 100.0 34 ............................. AATATTTTATTCGCTTGAATAGAGTAGGGTTCTC 62635 29 86.2 0 ........C....C..A...........G | T [62608] ========== ====== ====== ====== ============================= ========================================== ================== 50 29 99.7 36 GTTTTAACTACTTATTGTGAAATGTAAAT # Left flank : AAAAAGTCACCGTTCCATCTTTTTTCTCTTTTGTCTCTGCTTTGCTCGTCGTTGAATCATTCCCACAGCCCGCAATCAGTAGTAAAGTACAAAACACCACCATCAACTTCCAAACATTTTTCTTCATCCTTTTTCTCCTTTTTTCTATATAGTTTTTAGCAAAATAAAAACCCAGATAAATCAAAAAATAGCCCAAAAGCCATCTTCCAATCCATCTAGGTTATGCCCAAAATAGGTAACATTCCTGAGTGAGGTATTTGTTTATAGGATGATTTTAGCACAGATGGTAAGCGTTTACAAGTTTACGTATTTTCTGTCGATGTGTGGTAGCGTGGAAAGTACTGGAGACCGACAGATTTGCGGGATGCGTTGGGAGAGAATGAGAGTGGGGGGATTTTGGTTTTGAATAGTAATTTTAGGAAGTTAAAAAGCCAATTTTGAGATAGGTCGACAAAAATAGCCTTGTGAGGTAAGATGGGAGTAGGGATGAAAATGGACGG # Right flank : CCTTTCAATCATGCTAGTAAAGCTGCAGAAATAATTATTTCGAATTATAAATTCATCCAGCAACAAAAACATAGCTAGTAGCACTATCATAAATTTTCCAGTCAAAAAAATTAAAATCAAATTCTTTACTAGTTTTAAGGTATAAATCTTTTTAACAAAAAGTGAAAAATTTCAATAAATTATATAGCAAATGTTAAACAAAACACTAGTATTTTCAGTGTTTTTTTTTCGCTAGCATTCACTCTTTTTTTATGTTAAATTAAACACAAACAACAGAGGGGGTGACAAAAATGAGACTAAAAATAAATTGTGATTTCGACTCCAACATAATACCGAAAGACTACAGAGGTAAAATAGTCAGTTTATTCAAAACTGGAATTGAGAAATCTAGTCCCGAAAGATATGAAGATTTATTCGGGGGTAATAAGCGGAAAAATTACACCTTTTCGATATACTTGCCTAAACCTAAAAATAATAAAAATGAAATTTATCTTGAAGAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 3 72453-72035 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARVO010000008.1 Listeria seeligeri strain FSL L7-0925 NODE_8_length_110392_cov_72.234746, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 72452 29 100.0 34 ............................. CAGCATGGTAAATCGACAGTAATCACTGAGACCT 72389 29 100.0 37 ............................. GTTCTAGACCTGGTCTCGACAAATCACTTGTTAAAAT 72323 29 100.0 37 ............................. GTATTTGCGTTGTTTGAGCTATTCGACACCGATGTCC 72257 29 100.0 35 ............................. GATGTTTATTCGTCTTCTTTTCATTCTCGTTATAT 72193 29 100.0 36 ............................. TTTTTCCGAGCCATCATCACAAGCGCGGTTTTGAGT 72128 29 100.0 36 ............................. CTGTTTCCTTCTAGAAGCGAAAGGTGCGAGGCCTTC 72063 29 96.6 0 ............C................ | ========== ====== ====== ====== ============================= ===================================== ================== 7 29 99.5 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : GCGCAACAACTTCAGCCGATGTCCTGCTAGAAAAAGGCGCTGTAGAAGTTATTGCCTGCGCAACCCACTCGGTTATGGCCGGAAACGCAACCGAACGCTTACAAAACTCAAAAATCAAAGAAGTTATCACCTCCGACTCCATTGACCTACCAGAAGATAGACAATTTGATAAACTAACAACCATCTCCATCGGCCGCATCCTAGGCCGCGCAATCGAAGGCGTTCAAGAAAACCGCTCATTGCATCCGTTGTTTTAAGAAAATCTATAAGCAGAGACTCAAATTGGGTCTCTGCTTTTTTGTACGTTAACTTCTGTCGACCGTTAGTAGTGTAGAAAACAAGGGGGATCAACAGAACATTGGATTCCTTTGTGGGAGAATAGGTTTGGTGGGTTTTTAGTTATGAAATTAAAGTTCGGTGCTTTGATTTTAAGAGGTTTTTTGGAGATCGACAAAAATAGGCGCTTGAGGTAAGATGGGAGTAAGAGGAAAAGTGAACGG # Right flank : GTCTCCCAGTCCACTTACTTCAAGTGACCAGAAGTGTTTTAACTACTTTTAATCATCCAAAAAACACCAAAGCGGAGGAAACACTCATGAAAAAAGCATTTATCCCGCTTCTATTTTTACTATTCCTACTAGCTAGTTGCTCCGCGCCCAATGAAAAATTAACAAAAAACACCAAGATTTTTAAAGAAGGCGTCATTAATGCGGATTATCAGATTCCACAAAACCTAGCAGAGCTTGAATCTAACAGTGAAGATATCGTAAAAGTGAAATTACTACAAAATAAAGAAAATGGCAAAAATAACAGCACAATAAGTGAAGTAGAAATTATCGAGAAATACAAAGGGATTTTCGAATCAGGTGAGAAAATCGACATTTCAGAACCTTGGCTTTTAAACACAGGAGAGTACCAAGCTGTGGAAAACTACATTGCACTTGAAAAAGGTCAAGAGTATATCTTGTTTTTAAGCGGAGGACATGACGGGGATAGAGTAAGTTCTATC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:83.33%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //