Array 1 92698-94865 **** Predicted by CRISPRDetect 2.4 *** >NZ_VNHN01000007.1 Xenorhabdus doucetiae strain DSM 17909 Ga0056031_scaffold00007.7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 92698 29 100.0 32 ............................. GTGAGCTTCCCATGAAGAAATCATGGAACGGC 92759 29 100.0 32 ............................. CGGTTCTGTCGGTTTGAGTCTGCCGAATATGG 92820 29 100.0 32 ............................. ATGTAGATGATTCGATAAATAGTAAGCAATAC 92881 29 100.0 33 ............................. ACAAATCATATCTCGCATTTTCCCATCTGCGGC 92943 29 100.0 32 ............................. AGCCAACGTAACCGGTTGGTATACCCGTCCCG 93004 29 100.0 32 ............................. GTGGACGAGAAACAAAAGTATTCATTCCTCGA 93065 29 100.0 32 ............................. AAAATTGCAACACGGAGCTGATAAAATTTCCT 93126 29 100.0 32 ............................. TATGGAAATGGCAAATACTTTTCTACAACTGA 93187 29 100.0 32 ............................. AATACATAGCTCGAGGAAAGGCAGGGAAAAAA 93248 29 100.0 33 ............................. GTGTTAATCATGCCAGCACGTATCTAATCATCA 93310 29 100.0 32 ............................. TATTTAGAGGTTAAATCATGACTGGGTTTGTT 93371 29 100.0 32 ............................. GATACTAACGGTGAAATTAGCAACTTGAAGTT 93432 29 100.0 32 ............................. CAATTTGTCAGCCTATCTCTGATCTCACTGAT 93493 29 100.0 32 ............................. CCGTTTATAAATGGTTGCATGGTAAATCTAGG 93554 29 100.0 32 ............................. CTATCGGTGCGGAGAGAACAGAACGACGAGAT 93615 29 100.0 32 ............................. AAATGGCAATGGCGGAGGCGGAGATATGGAAT 93676 29 100.0 32 ............................. GGCATGAGCGCGACCACTGCGAGAGTGTGGTT 93737 29 100.0 32 ............................. TGGGTGCAATCCTCAATGGTGAATCTGAGATT 93798 29 100.0 32 ............................. CACTCCGTTACCAGATGCTCAAATAGAGGCTG 93859 29 100.0 32 ............................. AACGCAATAAATTCTGGAATAACTGCGAACCA 93920 29 100.0 32 ............................. ATTTGGCCGCCGCTACGAATTAGAGGTTCGTG 93981 29 100.0 32 ............................. CGTCATGATCCAGTTCTCGCAGGCTATGGCTT 94042 29 100.0 32 ............................. GATGCCAACGGTCAATGGATTGATCACACCAC 94103 29 100.0 33 ............................. GGAAAATTCCCACAAGCGTAACATCATTCAAAA 94165 29 100.0 32 ............................. GCTCTCGGAACGTAGCCAGAATAATTGGCGTA 94226 29 100.0 32 ............................. CAGTGGGTTGATGAAATAAATTTAGCGATCAC 94287 29 100.0 32 ............................. TTTTCAGAGAGAGTTTCAGGCTTTCTTTCCTA 94348 29 100.0 33 ............................. GGAATTAGGCGTTGAAACACCAGATGTCATTGA 94410 29 100.0 32 ............................. CTTGATATCACCAGTTTCTAAACGTTCTTCCT 94471 29 100.0 32 ............................. CTTGATATCACCAGTTTCTAAACGTTCTTCCT 94532 29 100.0 32 ............................. CTTGATATCACCAGTTTCTAAACGTTCTTCCT 94593 29 100.0 32 ............................. GCCAGAGATTACACGGAACTGGATACGAAGTA 94654 29 100.0 32 ............................. ACTAATCACGGTGGTAATGAGCGCGGCACATG 94715 29 100.0 32 ............................. TACCACTCTTTAGGAGACAATGAGCAGGAAGC 94776 29 100.0 32 ............................. AGGATTACTGGATGAATGGAAAACGCATCAAC 94837 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 36 29 100.0 32 GTGTTCCCCGTGAGTACGGGGATAAACCG # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTGAGTACGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTGAGTACGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.30,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 51100-48689 **** Predicted by CRISPRDetect 2.4 *** >NZ_VNHN01000020.1 Xenorhabdus doucetiae strain DSM 17909 Ga0056031_scaffold00020.20, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 51099 29 100.0 32 ............................. GCAGTCTTGGTATTGAAGGGGCAAATCAGTAT 51038 29 100.0 32 ............................. CCGAGTCAGTTTTTGCAAAGTGATGGTATCCG 50977 29 100.0 32 ............................. CAAAATTACGGGTTGATACTCGTAAGTGGTTC 50916 29 100.0 32 ............................. TCAATGCGACAAACTACTATGCTCACTGGCAT 50855 29 100.0 32 ............................. CATTCTATGTGTTCGTGGTTTAGATAATCATT 50794 29 100.0 32 ............................. TTAACGCACGGATTTCAATTAACTATAGGGGA 50733 29 100.0 32 ............................. CCAGATGAGTTTGTGGTAGACGAGGATTCTGT 50672 29 100.0 32 ............................. CAAATCCCCGAACTGCGCAACCCGCGCTATTA 50611 29 100.0 32 ............................. CATTCTATGTGTTCGTGGTTTAGATAATCATT 50550 29 100.0 32 ............................. TTAAAACAACGATTTAAATCAACTATAGAGGA 50489 29 100.0 32 ............................. GTATTAGTAATTTCTTCTTTTACCTGTTCAAC 50428 29 100.0 33 ............................. ATTGGCAGCGATTTGTAGCATATGCCGGGCTGG 50366 29 100.0 32 ............................. ATATCAGCGTGGAGGATGCTATAGCTGAAGGG 50305 29 100.0 32 ............................. CGTATTCAAATATTTTGTACGCAACGGCACAT 50244 29 100.0 32 ............................. GGCTATATGTTTCTGTACCGTGCATTGTTCAG 50183 29 100.0 32 ............................. CATTCGTGGAAACAATATGCGATTTAATTTCC 50122 29 100.0 32 ............................. TATTGGATTTGGTGGTGCTGGGTACCACGGTG 50061 29 100.0 32 ............................. GTTCACCAGGGGCCAACCGTCCTACGGCATCA 50000 29 100.0 32 ............................. CATCTATTTATTTCCTATTAAATTTTGTACGA 49939 29 100.0 32 ............................. GCTTCTGCGTGTTTCTGGTTAATGATATCCAC 49878 29 100.0 32 ............................. AAGGAATGGGAGAATGGCAAATTTACGGAAAG 49817 29 100.0 33 ............................. TTATCAAAACCTGCCAAATTTTAAGCATTTTAA 49755 29 100.0 32 ............................. ATCATCATGGAAAACTACCCACTGGCTCTATT 49694 29 100.0 32 ............................. TATTCAACATTAAAACAAATAGCTGACTTTTT 49633 29 100.0 32 ............................. TGATTCTTACCGTAATCAGAGAATTGCATCCC 49572 29 100.0 32 ............................. TATGGGTATCGCCAGAGCAGAATATTTGAAAT 49511 29 100.0 32 ............................. GAATATAAAGACTCGATTCAATAATTAGAATT 49450 29 100.0 32 ............................. ACGTGCCGTTCGGTAATGCCGGCATCGGTTAT 49389 29 100.0 32 ............................. GCATTATCAGTACTCAAAATCGCCATTATTCC 49328 29 100.0 32 ............................. TCCACTTTGACATTAGTCGAGCTAACAGTAGG 49267 29 100.0 32 ............................. GAAACGGCCGCAGAGCGTTATGCCATTGAGAA 49206 29 100.0 33 ............................. CCATTACTGACCAGTTTATAACTCGGCCTATGA 49144 29 100.0 32 ............................. CCGAGTATCAGCAAAAGCTCAAGGCGTTGAGG 49083 29 100.0 32 ............................. CGCTTACTGATGATAGCGGCGGTCTCTCTCGG 49022 29 100.0 32 ............................. AAACGCGACCGTCTAATGCGTCCGCCTACTCC 48961 29 100.0 32 ............................. GTACGGGCAGCGGCGGATATCGGCGACTTTGA 48900 29 100.0 32 ............................. CGATAATTAACTTATGGTTAAAAACACTAATA 48839 29 96.6 31 .......................G..... TATCTATAGTTTTCTCGCTTGGTGAAGTGGA 48779 29 96.6 32 ...........A................. GCGCTTGAAGGTGGACGTTATAAAGTGGATGT A [48778] 48717 29 86.2 0 A..........A..CA............. | ========== ====== ====== ====== ============================= ================================= ================== 40 29 99.5 32 GTGTTCCCCGTGAGTGCGGGGATAAACCG # Left flank : CATGAACCACCAGTTATGTTTATGTGTTCCCCGTGAGTGCGGGGATAAACCGCACTGGACATTAATCCTATCAATGATTTTGACGTGTTCCCCGTGAGTGCGGGGATAAACCGCTCATCATTGGATAGTGGACGTTAAAAGCACGGTGTTCCCCGTGAGTGCGGGGATAAACCGTATTCGCTGAGGTTATGTCTCAGGGGGTTGCAGTGTTCCCCGTGAGTGCGGGGATAAACCGACATTATCGCCCACGCGAAAGCGGAAGGGGTGGTGTTCCCCGTGAGTGCGGGGATAAACCGGGATCAATAAACCGGATGAAGCAGTGGAGAGTGTGTTCCCCGTGAGTGCGGGGATAAACCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTGTTCCCCGTGAGTGCGGGGATAAACCGTCCCCTTAGTTAAATGGATACAGAGATATAAA # Right flank : TCATTATTGCAGTTTTGGCAGATAAAAATAACCTAAAAGAAGAAAAAACATTGTGAAATTATTACAAGGCGGTCATAAAAATAACCAGCAGAATTTAGATTCTGATGCAATAGGATTTTTATTACTGTCCGCCCATATAATTTTAAATGTGATCAATATTCCATATAAAACATTACCCTAATGAAGAAATGGTAGAAAATCGGGTAAATTATCCAAATCTGTTGTTAATGCAAATGATTTAACTGACTTTTTACATGATCCGCTATTTTAAAATAATATAATCACATAAGGAAACATCTTGGGCACTCACACCACAACAGAAATAACATACTGGAATCGCATGGTGCCGGAACTGACTGTGACCGATTTTTCTGTTTCGCTCAATTTCTATCAAAAAATATTAGGGTTCGAAGTATTAATCCAGCGAGAAGATCCTGACTTTGCCTATTTAAGTTTAGGGGAGGCGCAATTAATGCTGGAGGCATTTCATGATGAAGGTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTGAGTGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTGAGTGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.50,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //