Array 1 1037441-1039238 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP019355.1 Escherichia coli strain XH988 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1037441 29 100.0 32 ............................. GATACGCTTCATCGCCCGACGTGGGGAGCATA 1037502 29 100.0 32 ............................. ATATTGTCAGAAACTGGCTGGAGCATGGTGAC 1037563 29 100.0 32 ............................. GTGGCTGAACTTCCGATGCGATGAATGTTATT 1037624 29 100.0 32 ............................. GCGAATGCCCCATCTGTAAACGCCGGGGAAAA 1037685 29 100.0 32 ............................. GGATTTTCTTTGGTGGGGAATGCCCGCCGTGT 1037746 29 100.0 32 ............................. TTGATTACCTCGCTGTTGCTGCGCTACTGGTG 1037807 29 100.0 32 ............................. GCGTTTCCATGCCGTTGATAAACATCCCGCCC 1037868 29 100.0 32 ............................. GGTTGCCATCGCTGACGCAACGTCATTAAGGC 1037929 29 100.0 32 ............................. GGAATAATTACCGCGCTGATTAAATTAATTAA 1037990 29 100.0 32 ............................. GCGGCAGCGCCCGCCGGGTACGACGGCAGCAC 1038051 29 100.0 32 ............................. CGCTTTTGCTCAGTAGTGAGTGTGATTTCATC 1038112 29 100.0 32 ............................. CAGGTACAGCCGTTTCGGTGTTTTGTTTTTGT 1038173 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 1038234 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 1038295 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 1038356 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 1038417 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 1038478 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 1038539 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 1038600 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 1038661 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 1038722 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 1038783 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 1038844 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 1038905 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 1038966 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 1039027 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 1039088 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 1039149 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 1039210 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 30 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1054738-1055682 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP019355.1 Escherichia coli strain XH988 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1054738 29 100.0 32 ............................. ATTAACGCGGCCCGCCTCTGCGTTGGCGTGAA 1054799 29 100.0 32 ............................. CGCGTTTCTGGAACCGTAATTTGCTGCGGTAT 1054860 29 100.0 32 ............................. CTATTGGCCTCACTGCCACCGCAGTTAATACT 1054921 29 100.0 32 ............................. GTGGTTACCTAGTTGCTATGTGTTCGTGACAA 1054982 29 100.0 32 ............................. CGCCGAGCGTGGCGCGGATATAAAAAAGCCCC 1055043 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 1055104 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 1055165 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 1055226 29 100.0 32 ............................. CTCCGCTCTGTGTTCGATAAACTCATCCAGCA 1055287 29 100.0 32 ............................. GACTCAACCGCGCTTCCCGGCCTCACCACTGC 1055348 29 100.0 32 ............................. GCGAAAAAATACGGCTGGATGCGACAAAAAAA 1055409 29 100.0 33 ............................. GAGAAGAAGCTCCTGAGCTAACCGTTGAAGAGC 1055471 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 1055532 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 1055593 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 1055654 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 16 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGACTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCAATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //