Array 1 65644-63980 **** Predicted by CRISPRDetect 2.4 ***
>NZ_SEWN01000013.1 Salmonella enterica subsp. enterica serovar Heidelberg strain 19_18 NODE_13_length_136564_cov_13.1437_ID_25, whole genome shotgun sequence Array_Orientation: Reverse
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================= ========================================================================== ==================
65643 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT
65582 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG
65521 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT
65460 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA
65393 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT
65332 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC
65271 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT
65210 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA
65149 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG
65088 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA
65027 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA
64966 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC
64905 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC
64844 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC
64783 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT
64722 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG
64661 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG
64600 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC
64539 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC
64436 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT
64375 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA
64314 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA
64253 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC
64192 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA
64131 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC
64070 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA
64009 29 96.6 0 A............................ | A [63982]
========== ====== ====== ====== ============================= ========================================================================== ==================
27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT
# Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT
# Questionable array : NO Score: 6.13
# Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37
# Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37
# Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41
# AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: R [0,5.92 Confidence: HIGH]
# Array family : I-E [Matched known repeat from this family],
//
Array 2 83023-81899 **** Predicted by CRISPRDetect 2.4 ***
>NZ_SEWN01000013.1 Salmonella enterica subsp. enterica serovar Heidelberg strain 19_18 NODE_13_length_136564_cov_13.1437_ID_25, whole genome shotgun sequence Array_Orientation: Reverse
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================= ================================ ==================
83022 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA
82961 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA
82900 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC
82839 29 100.0 31 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTA
82779 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC
82718 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC
82657 29 100.0 31 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCA
82597 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC
82536 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT
82475 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT
82414 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT
82353 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC
82292 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT
82231 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC
82170 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA
82109 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA
82048 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA
81987 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT
81926 28 82.8 0 ...............A.AA.....G-... |
========== ====== ====== ====== ============================= ================================ ==================
19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT
# Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC
# Questionable array : NO Score: 6.20
# Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37
# Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37
# Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41
# AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: R [0,5.65 Confidence: HIGH]
# Array family : I-E [Matched known repeat from this family],
//