Array 1 65644-63980 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_SEWN01000013.1 Salmonella enterica subsp. enterica serovar Heidelberg strain 19_18 NODE_13_length_136564_cov_13.1437_ID_25, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                                                           	Insertion/Deletion
==========	======	======	======	=============================	==========================================================================	==================
     65643	    29	 100.0	    32	.............................	GGGAAAAATCAATAAAATCAATGATAAGCAGT                                          	
     65582	    29	 100.0	    32	.............................	GCTGGGTAGTGGAGTAATCATTATGTGTGGTG                                          	
     65521	    29	 100.0	    32	.............................	CAGTGAGATGCCGCCAATTTGTCAAATAAAAT                                          	
     65460	    29	 100.0	    38	.............................	CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA                                    	
     65393	    29	 100.0	    32	.............................	CCTTTAATCGCCTCTTATCGCCTGGATTGGTT                                          	
     65332	    29	 100.0	    32	.............................	TTAAATCCATATACGGGCCTTGCGGGTTTGCC                                          	
     65271	    29	 100.0	    32	.............................	GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT                                          	
     65210	    29	 100.0	    32	.............................	GCGCGCCAATAATTTTATTGACGATTTCATCA                                          	
     65149	    29	 100.0	    32	.............................	CCGCTGACGCACTGGATCAACCTGACGCAACG                                          	
     65088	    29	 100.0	    32	.............................	TTGCAGGGCGATATTGTTGTTGGTGAATGGGA                                          	
     65027	    29	 100.0	    32	.............................	CGTCGCGGAAAATTTCGCATTGACGATAAAGA                                          	
     64966	    29	 100.0	    32	.............................	TTACGTGTTTATTCATCTGTTGCATTAGATTC                                          	
     64905	    29	  96.6	    32	............................T	GAGGCGTACAGGCTGTTAGATGAGAAATTACC                                          	
     64844	    29	 100.0	    32	.............................	ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC                                          	
     64783	    29	  96.6	    32	......T......................	GTTTGCCGTATCTTCGATCATACCGGAACGGT                                          	
     64722	    29	 100.0	    32	.............................	TGGATTATCTGTATTTTACGGAAGTGGGCGCG                                          	
     64661	    29	 100.0	    32	.............................	GTCGTTCATCAGGCACTACCGGCACTTTCTGG                                          	
     64600	    29	 100.0	    32	.............................	ATATTCGCCGCTTTCCATTTACCGAACGTAAC                                          	
     64539	    29	 100.0	    74	.............................	AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC	
     64436	    29	 100.0	    32	.............................	AGCCGTTTCCGCTAAATACCCCCGCAGTGATT                                          	
     64375	    29	 100.0	    32	.............................	TTCTTGAATATGATTGCGGGTATATGTGGATA                                          	
     64314	    29	 100.0	    32	.............................	TCTGGTTATAACATCGCAGCAAAATCAAAAGA                                          	
     64253	    29	 100.0	    32	.............................	GCAACCCATTAATTAACTAAGCAGTAATAAAC                                          	
     64192	    29	 100.0	    32	.............................	TGACGAGGTGCGAGCGATGGTATCAAGGCCTA                                          	
     64131	    29	  96.6	    32	.....T.......................	GGTTAACCAGGGGTTTTTCCCCACTATTTCGC                                          	
     64070	    29	 100.0	    32	.............................	AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA                                          	
     64009	    29	  96.6	     0	A............................	|                                                                         	A [63982]
==========	======	======	======	=============================	==========================================================================	==================
        27	    29	  99.5	    34	GTGTTCCCCGCGCCAGCGGGGATAAACCG	                                                                          	       

# Left flank :   GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT
# Right flank :  TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT

# Questionable array : NO	 Score: 6.13
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [4,5] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-12.00,-13.50] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [3-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,5.92   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
//


Array 2 83023-81899 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_SEWN01000013.1 Salmonella enterica subsp. enterica serovar Heidelberg strain 19_18 NODE_13_length_136564_cov_13.1437_ID_25, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	=============================	================================	==================
     83022	    29	 100.0	    32	.............................	TTCCAGAACCGTTTGACTTACTGTGGCCATTA	
     82961	    29	 100.0	    32	.............................	GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA	
     82900	    29	 100.0	    32	.............................	CTCCAGCGCTCGAATTTATTTGAGGCCACCAC	
     82839	    29	 100.0	    31	.............................	TTTTGATACGTAGTATTCATTACGCCTCCTA 	
     82779	    29	 100.0	    32	.............................	GCGAGGTCAATAAAAAATGGTGTGGCTTTACC	
     82718	    29	 100.0	    32	.............................	CCGGCATCAGCGCCGATCCGTTCATAGTGCCC	
     82657	    29	 100.0	    31	.............................	AAAAAACAGAAGAACGGCAAGCGGCACCTCA 	
     82597	    29	 100.0	    32	.............................	CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC	
     82536	    29	 100.0	    32	.............................	AACAGGAACAGGAAAAAAAAGATTTGTCCGGT	
     82475	    29	 100.0	    32	.............................	CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT	
     82414	    29	 100.0	    32	.............................	CGGAGGATGGAATATTTCCGAGGCTGGCGATT	
     82353	    29	  96.6	    32	.............T...............	ATGCCGGAACGCTGATGGCGTTTGACATGAGC	
     82292	    29	 100.0	    32	.............................	AATTATTTCTGTGGCTGGGGTTTCGATTCGAT	
     82231	    29	 100.0	    32	.............................	TGACGCTGGTCTATACCGGCAACGAACGCGAC	
     82170	    29	 100.0	    32	.............................	TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA	
     82109	    29	 100.0	    32	.............................	CAGGTTATGCGCAAAAATTAATTCATATTATA	
     82048	    29	  96.6	    32	.................A...........	GACGAGTTCTGGAAATGGTTAGCTGATAAAGA	
     81987	    29	 100.0	    32	.............................	CGTTCATCGGCAGCGTCACGCAATATGAAGAT	
     81926	    28	  82.8	     0	...............A.AA.....G-...	|                               	
==========	======	======	======	=============================	================================	==================
        19	    29	  98.7	    32	GTGTTCCCCGCGCCAGCGGGGATAAACCG	                                	       

# Left flank :   GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT
# Right flank :  TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC

# Questionable array : NO	 Score: 6.20
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [4,5] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-12.00,-13.50] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [6-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,5.65   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
//