Array 1 204-765 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOHA02000078.1 Leptospira santarosai str. ST188 ctg7180000005535, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 204 29 100.0 32 ............................. CTTCTGCAAAGTCCTGGGTGAGATACCCATTT 265 29 100.0 32 ............................. GAGAAACTAAAATGACAGACGAACAAACAGCG 326 29 100.0 12 ............................. ACTCACAAAGAC Deletion [367] 367 29 100.0 32 ............................. GATCATGCAAATACGATTCTTGTGATCTCGAA 428 29 100.0 31 ............................. CACACGTTTTCCGATTTCGCGGGTCTGAAAA 488 29 100.0 32 ............................. CGCATCTACCGTAGCCCTGTCCCTCTCGCTAA 549 29 100.0 32 ............................. TTAGGGCCGCTCTCTACGGAGCCTGTTTGCCC 610 29 100.0 32 ............................. ACGCACAATGCTATGCCGGACGACCAAATCTT 671 29 100.0 32 ............................. CGATCGAATGGGAAACGTCGTTCGCAACACAG 732 29 93.1 0 .......................C....A | CAT,TT [753,760] ========== ====== ====== ====== ============================= ================================ ================== 10 29 99.3 30 CTTTTCCCCACATGCGTGGGGTTGAACCG # Left flank : GAAATCTTAAATACATCCTTACTTATTTCTCTCATCGTATTACAAACGCCGGATCGGAAAGTATGAATTCAAGAATTCAAAAAATTAAATCGAATGCAAGAGGCTTTAGAAACTTCCAATTCTTTCGTATCTCTATTCTCTTTCATTTAGGCGGTTTGAACCTTTACCCATGAAATTACCGGAAGGGCCACAAGGTTTTTAGCC # Right flank : AAGGAGTTTTTGAAAAATGAACTCTCAAAACGTTTCAGAATAACGAAATGAAAATCTTAGAACACGACGGTATAAGGAAAACGAGATATCCAAATCCTACTCTAAAATTTCCGATGACATCGGAAACGATTCTGAATCTTTAACTACCGGCAAAAGCATTTTCTACAAAAATTCTCTTTTTACCGATTTTTGTATTTTTTCTTTCGCGCGACGGTAAGCTCTCTTTTTTGTTTCATAATATTCTTTTTCTTTGATATATTTTCAAATCCATAGCCGGGAATGTATACCGCATATTTCGACATTGAAAAGATAGCCTCTCTATCCTCGGCAATTTTGAAACGTGCGCCTTACCCGATCTTATATCCGACAAAAATAATAAATTAAAAACTTATAAAATCATTTCCATTGCAAATACGGAACCCGAGATCGCATCTCTCAGAAAAATCCCTTTCTCAAGTTGATTCCGTATTCCAAATACGCTTTGAGGCAACAACACATAT # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.22, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACATGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 39012-38556 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOHA02000046.1 Leptospira santarosai str. ST188 ctg7180000005518, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 39011 29 100.0 32 ............................. GTTGCATTTGACGTGAACGACATTAACCGCAA 38950 29 100.0 32 ............................. GGTTCGCAATGAGTGGATATGCGTGGGGCTCA 38889 29 100.0 32 ............................. AATGCAAATTGTATCAGGTATCTTACAGCTTG 38828 29 100.0 32 ............................. TCAATTTCTTACGTACCGTACTACCAAGATAA 38767 29 100.0 32 ............................. TTCCAAGAAACGCCGTACGATAGCCCTTCAAA 38706 29 100.0 32 ............................. AGTGAGTTCGTCTTCAACTTCTCTCATTTGTT 38645 29 100.0 32 ............................. AATCCAAAGCAACTCGCCAGTCTCATCTACGG 38584 29 96.6 0 ............C................ | ========== ====== ====== ====== ============================= ================================ ================== 8 29 99.6 32 CTTTTCCCCACATGCGTGGGGTTGAACCG # Left flank : ATAGTAAATTACTTAAGAGGATTATTCCGGATATCAAGGAGTTGATTTATGGTGGTTCTGATTTTGGAGAGAGTGAAGACTTCTCAGAGGGGAGAGATGTCGCGGTTAGCCATTGAACTGAAACCGGGCGTCTTTGTGGCGTCCATCAACGCCAGAGTTCGAGATCGGATCTGGAAAAAAATTTCCGAAGAATGGAAGTCGAACGCGATCATGTTGTTTTCGAACAACTCGGAACAGGGTTACGGCATCCGTTCCCACGGCGATCCTTCCCGAGAAATCATGGACTTTGACGGTTTGCTTTTAATGTCCAAACCCGATTCCAAACGCGACCGCTGGGACGATTCCGATCTTTCCAAAAGCTCCGAAGTCGACGGTTCTCCGTTTCCGGATCTCAGTAGTTTTTTCAACGAAAAGGCGAACTCCCTTCTTTTAGAAACAGACCTTTCTAATGAACCTTAGAGGCAGATATACTTCTTAAGATTCCTATACAAGTTTTTAGC # Right flank : GCTGCGCACATCCGAATGAACCGCTTCCCACCATACGAGCGCCCTAAAAAAAGGTATAAAATGAAGAACGTGAGTTCGGCCTAAGAAAATCGGGCCTGTCCCGAATGTGGGAACTCTTACAGTTTCAGTAAAGCTATCGAATGATAGGAACCGATTTCTTTTAAGATTTTGAGACTCGCTCCAAGCATCATGAATTCTAAGCTACATTCTTTTGAGTGCGTTTTTAAGTCTGATTTCAAATAAAAACATTTTCCATTCATCCAGTTATTGCTATTATTATAACATGGACAACTCATCGGTGAAAAAGACGACCATTCGGGCAATAGGCAACTCCGCCGGAGCTACCATTCCTAAAGCTCCATTAGAAAAGTATAATTTTTATGAAGGCGACACCGTATTACTCTTAGAAACCGAATCGGGTATCCTTTTATCTCCCTATGATCCCGACTTTGAAAAAGCTATGGATATTTACCAAAAAGGTCCTAAAAAATATCGGAATG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACATGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 7545-6859 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOHA02000033.1 Leptospira santarosai str. ST188 ctg7180000005557, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 7544 36 100.0 35 .................................... AATATTGATAATTTTTAAAATAATTTTTAATATAG 7473 36 100.0 31 .................................... TATTCTGTTCCCCAAAGGTGGTTCAGTATAA 7406 36 94.4 36 .....CT............................. GCGGAGAGTTCTCAATATAAACAGAAAATAAACGAA 7334 36 100.0 35 .................................... GGTCTTCGTAGACGTCGAACTCATGAACGAATTGT 7263 36 100.0 38 .................................... TTTATTTGATGAATTCAGGAGTAGGCCGACAGAGGAAG 7189 36 100.0 37 .................................... CAAATCTACGCCGTGCAGATCTACGCGATGCAGATCT 7116 35 97.2 37 .....................-.............. ACGAGATAGTGATAGGTATCGGCTTCCAAAACTTCAC 7044 36 91.7 40 ....................AG....T......... GAAGTAATACATTCAATTTTAACGACGAACGGATTTCAGT 6968 36 97.2 38 ................................A... ACTACAGAATCGAATGATCAAGACATGAGCCAAATCGA 6894 36 86.1 0 ..............................TCA.TT | ========== ====== ====== ====== ==================================== ======================================== ================== 10 36 96.7 36 CTGAATATAACTTTGATGCCGTAAGGCGTTGAGCAC # Left flank : AAATTGGCAAAAGTCACCGAAAAGGAAGACGATATATTCTACCTAACACTCTGTGCCAAATGTGCTTCCGGCGCCCATACCCAGGAGAAAAAATCCGCCTGGCCGGATGCTCCAAAGACACTGAAAATTCTGTAATTCAAGTATCTCTTTCGGGCATAGACATAATTCTCTTTCGAAAACAAATACTTTCCACTTTTCATCTTTGTTTAGTTCCCATAGTATCAATTTTCATTGGATTCCAGAATAGTTTCGATCAGTTGATACTTGGCGCCTATTTTTCTTTCTTGCGAAAATTCTGATTCAATTCATTATTAGAAATCGGCTAAAATGTAATTGAATCCTTAAATTCAAAGCTAAAACACCAAATGAAGCAAAATCCTACTCGTTATAGAAAATATAAATATGAAAAATAATTATATGGAAGGATATGCTTGTTTACTATTTAACAATGTCTTTGTATCTGCAATCCCTCCGCGCAAAAATGATCAAAAAAAAATGCT # Right flank : CCCCAAAACAATAAAAAAGCCGAAGATCACTCTCCGGCTTTGAATAAACTTAGATCCTTAACAACATACAAACTACGATAGAGAGTTTATCCTATTTGAAATCTTCTTCGATTTCTTCCTGGCGTTGTTGAATATTAGCAAGGCCTTGAGTGTCCTCAAGACTTTCGTAATATGGTCAAGCCTCACGACCAACCGCAGCACCGAGAAGCGACAGTGTCGCTTCGAATGCGAGGTTAGGACTCGTGCAAAGCGAAGGCGAAGCACGAAGTCCTGGGCGTGAAACATAAAAAAAAGCCAGACTGACTTAGCCTGGCTCTTGTTTGATGTTAGTCGTTTTACCGACCTTGGATATCTTTCCTTAACAACATACAAACTACGATAGAGAGTTTATCCTATTTGAAATCCTCTTCGATTTCTTCCTGGCGTTGTTGAATATTAGCAAGGCCCCCGAGTGTCCTCAGGGCTTTCGTAATATGGTCAAGCCTCACGACCGATTAGTA # Questionable array : NO Score: 3.02 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGAATATAACTTTGATGCCGTAAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 177248-176670 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOHA02000009.1 Leptospira santarosai str. ST188 ctg7180000005517, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 177247 29 100.0 32 ............................. GGAAAAGGGAGACGATAATGGAAAAACTCAGT 177186 29 100.0 32 ............................. CAAAAAGGACGCAGAAGCCTTGGTTCGTTCAG 177125 29 100.0 32 ............................. AACAAAGGGAGAGGTTCAAGTGAAAATAGTTA 177064 29 100.0 32 ............................. AGTTTGGTAGTAGAGATCTTCGAGTTCGAATA 177003 29 100.0 32 ............................. TAGGGGAGTTGATTGTTAGCCTCAACGTAATT 176942 29 100.0 32 ............................. TGAGACGGATCTCGTCGTACAATTCCGGTATT 176881 29 96.6 32 ......T...................... CCGTCTGCCTGACTCATTCCGGAAACGTCACG 176820 29 96.6 32 .........G................... TAAGACACATCTTCGAGTTGGCACTGACCCAA 176759 29 93.1 32 .........G...A............... CACGAGCCCGTTATATATAGCGGCGCGGACTG 176698 29 82.8 0 .......................ATT.AA | ========== ====== ====== ====== ============================= ================================ ================== 10 29 96.9 32 CTTTTCCCCACATGCGTGGGGTTGAACCG # Left flank : ACCATTCCCGAGAAACGGAATCTTGCGTATCGACAATAATTTTTTTTATACTCGCTCGGACGAAATTTTATAAGCGATAAAAATACGAAGTTTCTTTGAATCCTAAAACAGAAAAACCTCATGACGGATTTTTTTCTCAGAATCCTCGTCTCCACTCGCAATCCGGTCGCCCGCACAAGTTAAAAATTTATAGTTCCAAGTCTCAATATATTATAATTTTTTCTAATATTCAAATCACATGATTCCGAATATAGAATCATAGCTCCTTGAATATGGCGGTTTTATTTTTCATACCGATCGTTTTTGTGAACTAAAATACAAGATCAATCTATTTCTATAAGAACCTGTCTCAAAAGAAACTCAATGCCTTCGTTCTCTAAGGATCACTCGGGGAAACTCAATGCCTTCGTTCTCTAAGGATCACTCGGCAGGTTTTGGGACACGCTGTAAGTGAGTTCTAAACTGACATAATATCTCAAGGTCCTATACAAATTTTTAGC # Right flank : TTGAAAGTTTTTACAAGATAGAATCAACGAACGAACTTTAAATTTTCGACATTTATATTTTGGAAAAACTTCACCCATTCAAAGATAGATTTGAAAACGCAATCGAAATCCCCAAAAATATGCCTCAAACGTTTTGTTCTATCTCGAAACGAAGTATCAAAACAGAAAACACCGTTCGAAAATCAAAAAGTTTGAAAAAGAGAACTTGTGAACCGAGGATAATGATGATTTACTGATTTACAACGCTTCGGAAATAATGAAATTGATATGCGAAATTCGATTGTCGTTTTAATTTTTATCGTATTTACGTCTTTCGACCTATCGGCGAAAACCTCCGATTTAAAAGGGGAATGCAAACCGAAAGATTGGATCTGTATTCTTACCCGCAACGAAAACGACAAGGTAGAATTTTACATTCAAAACCAAACACCTTCGGGAGAATATCCCTTTATAATCCATTTTGACTTTACCACTTTGGATAACTTCGAATCGGACGTCCC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACATGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.01,4.91 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], //