Array 1 77652-76348 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JAANCZ010000012.1 Klebsiella pneumoniae strain i7 contig00012, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	=============================	================================	==================
     77651	    29	 100.0	    32	.............................	GGCTTCCGGGTGACGGGCGTACAGGGTGAGCA	
     77590	    29	 100.0	    32	.............................	CGATTACTGAGTCGTTCACGAACCGGCCACCA	
     77529	    29	  96.6	    32	........T....................	CAAAAATGCCAGGCACTGACTAAACCGCCGTC	
     77468	    29	 100.0	    32	.............................	TGACTTTTGCGCAGCCTCAGGGCTCCGGTTTG	
     77407	    28	  89.7	    32	.....-......CA...............	AACAATTTGAAGTTTCTGCGCCAGGTCGTTTC	
     77347	    29	  93.1	    32	............CA...............	GAAAGTAGGGGCTACGCCGGAATTCCGAAGAG	
     77286	    29	 100.0	    32	.............................	GCTGGATTTCCGTCAGTTGGTCAGCTGCTGCT	
     77225	    29	 100.0	    32	.............................	TTCCGGACTCCTGTTTCCGGCAGTGGATTAAA	
     77164	    29	  93.1	    32	............CT...............	ATTCCGTTCATAATTTTGTAGCTGCCCGCTAT	
     77103	    29	  93.1	    32	............CT...............	TTCTCTCCGCCGGGCAGTGTGATGCCGGAGGG	
     77042	    29	  93.1	    32	............CT...............	GCAGCGGCCTGATGATGATCGATATGAACGGC	
     76981	    29	  89.7	    32	............CA...A...........	TGAAATTGACGAGTGGATCAATCAGCGTATTG	
     76920	    28	  93.1	    32	.....-.......A...............	TCACTTTTGCGTCGAGCCAAGTTATTATCTCA	
     76860	    29	 100.0	    32	.............................	TAATTCAGGAAATGAATTCTAAAATTGAATCT	
     76799	    28	  86.2	    32	.....-....T.CA...............	TGAGGCTGCTGACGGAGAATTGGGACCTGTTC	
     76739	    29	  93.1	    31	............CT...............	TGACTTTTATGAAATTTTTTCTTAAAAAACT 	
     76679	    29	  89.7	    32	.........T..CC...............	CGGTAACGCAAATATGATCCGATGTCGTCAGG	
     76618	    29	  93.1	    32	............CA...............	GACAGTCACTATGTTCGGTATGTTTAAAAAGA	
     76557	    29	  93.1	    32	............CA...............	TTACTTTTAAAATAAATGTCTATATTGGCTCA	
     76496	    29	  96.6	    32	.............C...............	TTCGAGCACGGCCATGTGGAACTGTTCAGTGT	
     76435	    28	  89.7	    32	..........-.CA...............	TTACGCATTGTGATCGGGATTCGCTTCAGACG	
     76375	    28	  82.8	     0	............CAC........-....A	|                               	
==========	======	======	======	=============================	================================	==================
        22	    29	  93.9	    32	GTATTCCCCCCGTGTGCGGGGGTTATCGG	                                	       

# Left flank :   GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCTTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA
# Right flank :  CATAAAAACCGCAATGGTGGGGCTTTTGTTATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCTTCTGGATAACCCACATTCTGCCATATCTTGCAGGTTGCAATCAGAAAAGGCCTTACGTCGGTAAATTCATGCCTTGGGCTGGTAAGGAAGTATGACGTTATAACTCTGCATTTCTGGTTGATTAAGACAGGGCGGTATTCCTGCTTTAAAAACAATCACTAATTTTGAACGGTAGTCGTCTTGATCCCAACTGCTACCTGATGGACTAGGCACCTGCAAAGATCCAATTTATACTGTTTATATATACAGTGTTTTTAGGTGGTCGGAGGTTGTGTCTATGTTCTTAATTCCAATGGAAAATCCTGAGAAAATCGCCATCCCTTTATTTCTCGAGCGGTGTGCAGCTGGCTTCCCCAGCCCTGCTCAGGATTATACTTCCAGTGAGCTAGACTTGAACGATTATTGCATCAGGCATCC

# Questionable array : NO	 Score: 5.34
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.38,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTATTCCCCCCGTGTGCGGGGGTTATCGG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [8,2] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-12.70,-12.10] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [14-9] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.74,5.18   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
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