Array 1 2686854-2679316 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP023656.1 Halomonas hydrothermalis strain Y2 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 2686853 33 100.0 35 ................................. ACCTACCACATAAGGAGCCTTACATGCTGAAAGAC 2686785 33 100.0 35 ................................. ACAGAAATGATACTAAAATGTGACGCATGACGAAA 2686717 33 100.0 34 ................................. TCCCCCACCTCTGGCACCCATGCTTGATTGGTCA 2686650 33 100.0 35 ................................. AATCTATTCTAGGTAAATCAGCGCAAGACGTGGGC 2686582 33 100.0 35 ................................. CACGCCGTCCGCGAAAATACGCAGGCCCTCACGTG 2686514 33 100.0 36 ................................. ACGTATGTGGACAGCAGCGGCAGCGTCACGATTTCC 2686445 33 100.0 34 ................................. CAGGCGATTGTCTCGCAAATGGAAGTGCTGCAAG 2686378 33 100.0 34 ................................. AACCAACGAGCGAGACACACGGCGCGCATCGGTG 2686311 33 100.0 35 ................................. ACGACCCCGTTTGATGCTCAGGACGGCCCCGGCGA 2686243 33 100.0 35 ................................. TGGGGCACCGACGCCGTACGCGTTGCCTGCGAAAT 2686175 33 100.0 34 ................................. CCAAGCGTTCCGAAATGATCATGGGCCTGTTCAA 2686108 33 100.0 33 ................................. ATGGCGTAGCGCACACGCTCGTTATCGCCGCTC 2686042 33 100.0 33 ................................. GTCAGCGGCGGCCGCCGTGGTCACTTGCGTGAC 2685976 33 100.0 33 ................................. ACATCATTCAGGTGTCGGGCGCAGGCCTGCTTG 2685910 33 100.0 35 ................................. ACCAGCGCCTCGTACTCGCGGTTGAACGAACGCTG 2685842 33 100.0 35 ................................. AAGCTCAGCGTGATCTTTATCAGGAAGAGCAGCGA 2685774 33 100.0 36 ................................. GCGTGCTACTACACCCAGCCCAGCGCACAAACGCAG 2685705 33 100.0 35 ................................. AGCGACCTTGTTTGCACTGCGTGATAACCCGCTTG 2685637 33 100.0 35 ................................. CGGTCTGCCGCGTCCTTTTGATTGTCATCAAGCAG 2685569 33 100.0 33 ................................. GGCTGAGTCATGCCAAGGCCTTTGCACCACCAG 2685503 33 100.0 34 ................................. CATAACTGGTGGTTCGATCCACGTAGGTTTGTAT 2685436 33 100.0 35 ................................. ATCAGGTTAATGACCTGACGATGCAGCGGGCGGGG 2685368 33 100.0 35 ................................. CACCAGCGCGGGCGCCAGATCCAATGCGGCCACGT 2685300 33 100.0 32 ................................. ACGCCAGCAGCAGGTTGTTTTTGATGAGCAGC 2685235 33 100.0 35 ................................. TACTAGGCAGGGGTCGAGACAGGTCTTAATCCAGT 2685167 33 100.0 33 ................................. AACATCAGATAGCCAGCTCCTATAAACGACAAC 2685101 33 100.0 36 ................................. TTATCTAACCAGCTCTGGCGATATGAGGCGGATCAA 2685032 33 100.0 33 ................................. ATCATCGTGGCATTCGCATTTACCTTGATCCAT 2684966 33 100.0 34 ................................. AAGACTGCCTCGATGCTAACGGCGTCGATGCCAC 2684899 33 100.0 36 ................................. GCCCCGGTCAATATCAGGCAGTGCAGGCATGACCAC 2684830 33 100.0 34 ................................. GCACCGACCCGACCCGGATTAACATCGGTGGCCG 2684763 33 100.0 33 ................................. GTCAGTTAACCCAAGTCCGCGCAGCGCGGTCTC 2684697 33 100.0 35 ................................. GCGTCGCAGTGGTGGGTACTGACGAAGTGGTGTGC 2684629 33 100.0 36 ................................. ATAGCTGTTAAAGACGGGTTTGGTTGGATGCGTAGC 2684560 33 100.0 34 ................................. CCAGCGCCCCCCTTGTGTTTGATAGCTCAATCAG 2684493 33 100.0 35 ................................. ACCTACGAAGCCTCGCTGAGCGGTGGCGCCGCCGC 2684425 33 100.0 34 ................................. ATTGGTGCAGCGGGCCGCCACCCTGGCCATGGCG 2684358 33 100.0 34 ................................. TTCACGCACCTGCTCGTACAGCTTGCGCTGAGCG 2684291 33 100.0 35 ................................. CTCAGCAGGTCGATAGCTTTTGCAATTTCCCAGGC 2684223 33 100.0 34 ................................. TCCAAGCGCTCAAGGTCTGGGAAAGCGAAGTCAA 2684156 33 100.0 34 ................................. TCTAGCCAGTTGCGGACGATCTTGCGTTGCACTA 2684089 33 100.0 35 ................................. GGCTAGCACCGTGGCATAGGGACGCCACTCGTTGA 2684021 33 100.0 34 ................................. ACGATGGCGTTGATCTGCGTCTGGGCGCTGGGCT 2683954 33 100.0 35 ................................. ACGGTGCGGGTCCATGAGTGCACGCTACGTGGAAA 2683886 33 100.0 36 ................................. ATCCTTGATGCCGGAAATATCTTCCAGATCGGCCAG 2683817 33 100.0 35 ................................. AATGCAGACCGGGCGGCGGTGGTGGAGATCCTGGC 2683749 33 100.0 35 ................................. ATTTTCTCGGTGCCATGCTCTTGCCACATGCCCTT 2683681 33 100.0 35 ................................. TGTGCCCAGCAGCGCGGGCAAGCCTTTTTCCCGGG 2683613 33 100.0 35 ................................. GAGAGTTGGCCCATGACGATCAGCGCGACGAACAG 2683545 33 100.0 34 ................................. ACGGCACCTACAGCGCCCAGCGCCAAGAGCTGGT 2683478 33 100.0 35 ................................. GTCGGTGGGCTCTGGCAGCCCGATTACAACATGAG 2683410 33 100.0 34 ................................. ATTGGTAGTAGTTTCGCCATGTCGTTAGTCTCCT 2683343 33 100.0 36 ................................. GTTGCTATCCACCATGACGGCTACTACGTCATCGTT 2683274 33 100.0 35 ................................. ATGCCGATATGAACGATGGACGTTCTGGCACCCCT 2683206 33 100.0 35 ................................. TTCAGCGCTGACAGCACGTCAATAACACGGGCTCT 2683138 33 100.0 33 ................................. TTTTATGGCCATCGGCGGGCTTTTTGAGAACAA 2683072 33 100.0 34 ................................. ACGGGCCATGTCACTGCTGACCACGTCGCGGAAT 2683005 33 100.0 33 ................................. ACCGCATGGCGCTGGAAGGCGAGTACCTGGGCA 2682939 33 100.0 35 ................................. AATTCGCTGCACCTCTGGCAGCGATCAACAATGCC 2682871 33 100.0 35 ................................. AATGAGCGACACCAGACACAGCTCTTTGATGCCAT 2682803 33 100.0 34 ................................. CAGCTTTGGTGGTTGCGGGGCTAGTGGGGGCCGT 2682736 33 100.0 34 ................................. AACCAGCTGACGACGGCATGGCAGCGCCAAACCC 2682669 33 100.0 36 ................................. TGGCGTCTGCAGGTAGACGCGCTGGGGCCGGACGAC 2682600 33 100.0 35 ................................. TGCCAGCGTCGTGCGCGCATTGCCGCTGAGCGATC 2682532 33 100.0 34 ................................. ATGAATTTAGCCTCAACGCGCATCGTCTTCCCGG 2682465 33 100.0 34 ................................. CATGATGACGCCCTGCATACCCGCCACCGTGCGC 2682398 33 100.0 34 ................................. GCAAGCAAGCCGAGGGCCACCAATGACCCAGCCC 2682331 33 100.0 36 ................................. AACACTGACTCAGCAGATCAATACGGCGCAAAGTAA 2682262 33 100.0 35 ................................. AGATCGTAATCCGACTTGTTCAGGTAGGAGACATA 2682194 33 100.0 35 ................................. GTGGGGCTGAACAGCAACATCGTCAGCCTGCGCGA 2682126 33 100.0 35 ................................. GCTGACATGATAGCTATCCCCTAGCGTTGTGTCGT 2682058 33 100.0 36 ................................. AACAGGAGGCCACAACACGGGCCAACGCAGACCAAG 2681989 33 100.0 35 ................................. GCCACCCGCGACGATGCCACGGCCCACTACCTGGC 2681921 33 100.0 34 ................................. CGCTTCAAGGGCATCGGCTTTGCATCCGTCGAGC 2681854 33 100.0 35 ................................. ATCAACTGATTAGCGCCAACGGCGACCCAGATGCG 2681786 33 100.0 35 ................................. ACGCAGAGCGGTTGCGGCAAAAACTGGACGCCGAG 2681718 33 100.0 33 ................................. AGCAGCGCCTGCCAGCTGCTGGGGTCTCGATTG 2681652 33 100.0 36 ................................. GTCCAAGTAGGAGGACTTAATCACAGTGAAATCCAA 2681583 33 100.0 36 ................................. ACCAGCTGGTCAATCGCTTTGCGGGCAACACGACCT 2681514 33 100.0 35 ................................. TCAAAAAACCCTGTTTCGGCTACGTCTACGCGGAG 2681446 33 100.0 34 ................................. CAGCTCATCGAGCTGCACACGGGCGGCCAGCGAG 2681379 33 100.0 34 ................................. ACCCACTGAATTACTGTGCATGACTCACCAACAG 2681312 33 100.0 36 ................................. ACGCCATCGGCTTGCCGAGCAGAGATAAACTCCCGC 2681243 33 100.0 33 ................................. AACAGGAGTCCACCACCCGGGCCAGTGCAGACC 2681177 33 100.0 34 ................................. AAGCAGATCAAGCGAGAGGGTGACGACCTGTACC 2681110 33 100.0 34 ................................. GATCCCTGCGAAGATGCCCCGCGCCGGGTCGTTG 2681043 33 100.0 33 ................................. TGTTCGGCGATGCGCTGCCAGTGGGATAGCGGG 2680977 33 100.0 36 ................................. AGGCTCAGGCACCACGTCATACAGCGGTAGCTCAAT 2680908 33 97.0 35 .......T......................... CGTGATCGTCGGGTAAATGGCGTTGAGCCCCATGG 2680840 33 100.0 34 ................................. ATCCCGATCTGCCCGCCATTCGATAGTCGCCACA 2680773 33 100.0 34 ................................. ACTATTACCCGCGCCAAACCCAAGCAGGTCGTCA 2680706 33 100.0 35 ................................. TGCCTCATGACGGCGTGAAGCGGATCAAGGGCGAC 2680638 33 100.0 35 ................................. TTTTGCCTGGGAGGCAGCATGAAAGCACTGGTCAC 2680570 33 100.0 34 ................................. CAAAGCCAGTCATCCAGGGTGGCCACGGCGCGGA 2680503 33 100.0 36 ................................. AGGCGCGGATGATGCAGGATCGAAACGACATGGATG 2680434 33 100.0 36 ................................. TGGGAGGGCGTGGAGCTGCTGGGCAAGACCATTGAT 2680365 33 100.0 33 ................................. GTCAGGGAAGGCTCACGGCCGCCGGTGAAGGAA 2680299 33 100.0 35 ................................. GGACGCGCGGTGGCAAGCTCCGAGTTAGGGAAAGA 2680231 33 100.0 34 ................................. GGTAGCTAGCCTAGCCGCCCGTCAACTATAACCC 2680164 33 100.0 36 ................................. GAGTCGTTCTCCGATCAGCTCCTGAGCGGCTTCAAG 2680095 33 100.0 34 ................................. AGGTGCAGGCGGCGCGCTACTTGTTTGCCAGTGC 2680028 33 100.0 35 ................................. GCTACGCACTGCAGCCGATGATCGGCGGCAAAAAC 2679960 33 100.0 33 ................................. ATTTTAGGTGCGTGCACGCTGAACCCATGCTGC 2679894 33 100.0 35 ................................. CTGGCGCATGTTGAGATTGATACGCTCGACCTGCC 2679826 33 100.0 34 ................................. CAAGCTACCCGCTCAGGTGGCGAGTGTGCAAACG 2679759 33 100.0 34 ................................. CCCGCGTTGGTCGCGGGCGCGTCGATCATCGACA 2679692 33 100.0 35 ................................. ATCAGCAACTTACCCGCCCCCATAGGTGGCGTCAT 2679624 33 100.0 36 ................................. AGCGCTGGCGAGTACGGACTCCGCATCACGCAGCAT 2679555 33 100.0 35 ................................. AGTAGTGGCCCAGGCGCTTGGCGCGGCGCTGGTGC 2679487 33 100.0 36 ................................. CTGGAAGAGGTGCTTTAAAACATGGCAACTGAACGT 2679418 33 100.0 37 ................................. CAGAAGTTGTCGTTGCCCCAGACCACATCATCGAGGC 2679348 33 97.0 0 ................................A | ========== ====== ====== ====== ================================= ===================================== ================== 112 33 99.9 35 GTCGCGCCCCGCCCGGGGCGTGCGGATAGAAAC # Left flank : TAACGTACTGAGGGCAATATCATGATGGTACTGGTCAGTTACGATGTCAGCACCTCTTCAGACGGCGGTGAAGGCAGGCTGCGGCGAGTGGCAAAAGCGTGTCGAGATGTAGGTCAGCGAGTACAGTTTTCCGTGTTTGAAATTGAAGTCGACCCCGATCAATGGGTACGCTTTCGTCAACGCTTGATCGACTTGATTGATGACGAGGTAGACAGCTTACGCTTCTACTTCTTAGGCCGAAATTGGAAAAACCGCATCGAACATATTGGCGCCAAGCCTGCCTTAGACATGAATGGCCCTTTAGTTTTCTAATGTTTCTCTTGTTTGCGAACCCCAATTGTCTTGCCAAACCCCGTCAGGTTCGCAGCTCTTTAATAAATTGATTTTAATAACAAAATTTTCGCTCACTCTTTTGCATCAAGCAAAAATCGGCTAATGCTCAGTGTCTCGCAGAAGCATGTCTTTTTGCTTTTATTTTTCATGATGTTATAAACAGAACA # Right flank : TACTACCAAGGCACGCGCTGCCGAGAACGACTCAAGTCGCACCCCGTCCAGAATGAATATCTACATAGGGAGAATAGATACTCGTATTACTGGCATATCACCTGATCAATGGTGAAAATCTACTTTTTAAGTTTCAGATAAGGCCTTGATTAGCTCAGTGCCTTATGAAGCTAAAATCTATACCCATGCTCTTAAAAAAGAATCAAACACAGCCTTGCAACCTCCTCTTATTAGCCAAAAGTGGTAGAGTGCGCGACGATTCGCTTTACGAATCGCTAATAATGGTGACCTAACAGGAGAATCGCAGTGCAGGAAACAGCACAGCAGGGAAAGTTTGCGTGGTGGCGCGGTATCGCGCTGTGGAAGAAAATTCTGGCGGGCCTGGCGCTGGGTATCTTGGCCGGGGCGTTGCTGGGCGAGACGGCCAGCATCTTCAAGCCGCTGGGTGATATTTTCATTAACGCGATCATGATGCTGATCGTGCCGCTGGTCTTTTCGAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGCCCGGGGCGTGCGGATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCGCTCGGGGCGTGCGGATAGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.30,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //