Array 1 5906-6904 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JAAFCP010000041.1 Klebsiella pneumoniae strain 9-31 NODE_41_length_7380_cov_91.668355, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	=============================	================================	==================
      5906	    29	 100.0	    32	.............................	ATCAGCCTGCGGGGTTCGGAGCTGCGTGTCTC	
      5967	    29	 100.0	    32	.............................	GAAACTATTTCGGAGCATCTCATTGCTGAGGG	
      6028	    29	 100.0	    32	.............................	TGGTGCTCTCAACCGTCACCCGCTGGCTGGAA	
      6089	    29	 100.0	    32	.............................	TCGTGTTGTCCACGGTTACCCGCTGGCTGGAA	
      6150	    29	  93.1	    32	............CA...............	AGGTATTTGACCTCATCCAGAAAGGCACAGAC	
      6211	    29	  89.7	    32	............CA..............C	CTTAGAGAAGCAAAAAAACCACCGAGGCAGGG	
      6272	    29	 100.0	    32	.............................	TTACCAATGGGGAAAAATCTTCATTTGTAAAT	
      6333	    29	  93.1	    25	............CA...............	AACATCAGTGGAAATCCACTGCGGC       	Deletion [6387]
      6387	    29	  89.7	    32	......T.....CA...............	AGCAGTTCGAGGAATAGTGACAGGCAGTGCAG	
      6448	    29	 100.0	    32	.............................	TTAATGTTTTGTTAATTTATGAGTGTGGTGAT	
      6509	    29	  93.1	    32	............AC...............	AGCAAATCGAAAATCCGGCTGTTTGAAAAATG	C [6514]
      6571	    29	  86.2	    32	............CT.A............C	CATGAGCCTGCGCACTCTGACGCGCACCTGCT	CC [6576]
      6634	    29	  93.1	    32	............CA...............	CCGACCCGGTGCCCAGGAGAACTGGCTGAATA	
      6695	    29	  93.1	    31	............C..A.............	TTCCCTGCACTAAGACGCTGGTGGTCGCCAC 	
      6755	    29	  86.2	    32	...C........CA............T..	CCGGTTCGGATTTTGCGAAACAGGTGCAGGGC	
      6816	    29	  93.1	    32	............CT...............	GGCATGAGCGAGAACCACTGCGAGAGTGTGGT	
      6877	    28	  79.3	     0	........T.A.CA........-.....A	|                               	
==========	======	======	======	=============================	================================	==================
        17	    29	  93.5	    32	GTATTCCCCCCGTGTGCGGGGGTTATCGG	                                	       

# Left flank :   GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA
# Right flank :  CATAGAAACCGCAATGGTGGGGCTTTTGTCATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCCTGGATAACCCACTTTCTGCCATCTTTTGTCTCAAAGGGTACTCCCACCGTGGCAGGTGGGAGGGGAATTTGAATTGACGCGATAGCGTTAAAGAAACATTTAGCCGCGCTGGTGCTGAATGTAGCGCTTTACGACTTCCAGCGGTGCTCCACCACATGACCCAACAAAGTAGCTGCGTGACCAGAGAACAGGCTTACTGTACGCCTCCCGCAAATCCAGAAATTCATTCCGTAGCCGCCGACTTGTGACGGCTTTCAGGCTGTTAACCAGTTTTGACAGTTGCACAGTTGGTGGGTATTCGACCAGCATGTGAACAAACAGTTTTAAACAGAACCAAAGCAGACTGGCAAGGTTACAGCGCCAGCTTGCCCGTAAAGTGAAATTCAGTGCGAA

# Questionable array : NO	 Score: 5.45
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.53,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTATTCCCCCCGTGTGCGGGGGTTATCGG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [2,8] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-12.10,-12.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [5-25] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [70.0-51.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.18,0.74   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
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