Array 1 26962-28246 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP070376.1 Halobacterium sp. GSL-19 plasmid pGSL19_54.9, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 26962 30 100.0 36 .............................. ACGTCCTCTACGTCCGCCGAGACGGCCAGCGCCGCG 27028 30 100.0 35 .............................. TCGCGGATGAGGTATGGGTTCGCTCGACCGTCTTT 27093 30 100.0 38 .............................. GTTGGCGGCGATGCTGACGGGGACGGCCCGGTGAACGT 27161 30 100.0 34 .............................. GAACACAGGGACTCCATATCGGTCAAAGCGACGA 27225 30 100.0 37 .............................. ATCCGCAGGAGCGTGAGTTCAGGTGACGGTGAGTTTC 27292 30 100.0 36 .............................. GCAAACAAGCTCACCGAGGGCTACATGGCCGACGAA 27358 30 100.0 36 .............................. ACCGGCTCGGCGATGACCACCCTGACCATGCCAACT 27424 30 100.0 37 .............................. AACGGGTGCTCGACCGATCATGATCGGGCTGGCCGAG 27491 30 100.0 37 .............................. AGCGCTAACTCGGTGAGTTTCTCCGGCGCTGTATCGA 27558 30 100.0 37 .............................. GCCAATGACGCCCCGGTTTAAGTGCCCGGAGTGTGGC 27625 30 100.0 36 .............................. TCGCATCGATGCACGTCCACGATCTCCACGGGCGGG 27691 30 100.0 34 .............................. AGCGACTACCAGCATCTCAAGACGTACTCCTCGA 27755 30 100.0 36 .............................. TACGTCGAAACCCGCCAGTTGAACGGTGAGGGGTCG 27821 30 100.0 39 .............................. CCGCAGGTGCGACCAAATTCGACCTTGTTGCCACAGCCG 27890 30 100.0 35 .............................. GTCCTGTGGGAGGTAGCGGTCTACGATGAGGTGTA 27955 30 100.0 35 .............................. GTGATCGTGGTCGCGATGGCTGCGGTGATCGCAGC 28020 30 100.0 36 .............................. ATCACGGCCGGCTGTACCCGAACCTCAACGACCTCG 28086 30 100.0 35 .............................. GATAAGTGCCATCATCATAAGGGCGTGAATGGTGA 28151 30 100.0 36 .............................. GATGGGCGGAACCACTGCCGCCCTGTCGCCCACATC 28217 30 96.7 0 .............................T | ========== ====== ====== ====== ============================== ======================================= ================== 20 30 99.8 36 GTTTCAGATGGACCCTTGTGGGGTTGAAGC # Left flank : GGCGCACGAACTCAACGACGCCGACGAACAAATCCTCAACCTCCTCGCCAGCGGCCGAAACCTCCCTCAGAACCTCGCCACCAAGACCGGATACTCTCGACAGTACGTCCAGAACCGGCTCCAAATGCTCAAAGCCGCTGACCTCGTCGACAACCTCGGCGGCGGCCTCTACGAGATCACCGACGATGGCCGCCATCGCATCGACGCCTCGTCCAGCCAGCTCGACGTCGACGAGTTGCGGGACGCGGTTACGGACGCCCGCGACGCCTACGAGAGCGTGAACGGCGACGGCGTCGAGGACGCCCTCGACCGCATGGAGCGTCTTCTGGCTGAGTGAGGCGACTGGACGGGCGTACAACTACTGGCCGACGGGGAAGATTGTGAGTTCTCCAGTGGAGTTTACCATCGACCCCCGGGGGGTTTGGGGGGTATTGGAGGTCGACGGAAACAATGAAGTAGGGATCGGGTGTAGGAGTGTTCACGTGGCTGAATTGGTCATG # Right flank : TCGATCCTTGACGGGGTAGCTCAGGTCTCCGCCACCGGGACCGGCTCACTGACCAACGGGCCGGCGGCGTGGGCTTGATCCTACCTCCGGTCGGTGTGGGCGCGTTCCCTCTGTTAAGCGACGGCTGTCTCCGGGTTAGGGAAACGTCCGGATAAACTGGATTCCAGCGGCAAGTGTCACAGACCAGCTAAGAACACGTGCAATGCGCCACAGCTGTTGGTTTTGGAAATCTGTGACGAAGTATCCCATATTTGCGATTCCAACGACGCCGAGTCCAAGCAGGAACGTACTCAGTAACAGCCAGCGTCGGATTGAACGTAGTAGCACCGCTTTCTCGGAGGGCATGGAACGTGTGTTCAATGCGACCAGTAACAATCTACCGATACTCAAGCCTGGATTGCTGACGCCATCGAAAAGACACTTGAGCGCGAAGCTCAGGAGAGAGCTGCGGGAACCCCGGCCAAGCGGTGACGACAGCTGACTGAGTGTGCAACGTGGTC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGATGGACCCTTGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.50,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 28926-29353 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP070376.1 Halobacterium sp. GSL-19 plasmid pGSL19_54.9, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 28926 30 100.0 37 .............................. AGGGACGCAAGATCGTACGTCGACACCGTCGTCCCAC 28993 30 100.0 36 .............................. TTGCAGGGTGTCCTCGTCGCGCTCCTCGAACTCGTC 29059 30 100.0 35 .............................. CAGAGAGAGGGTAGCCAGCCGGACAGGCTGGTGTT 29124 30 100.0 36 .............................. GATAAGTGCCATCATCATAAGGGCGTGAATGGTGAT 29190 30 100.0 36 .............................. GAACCCGCGTAGTGTTCCACCACGCAATGCGCTGTT 29256 30 100.0 38 .............................. CGATGCCTGGCAAGATGGCTGACAAAATTGGGGCTCAA 29324 30 86.7 0 ........C.......CA..........T. | ========== ====== ====== ====== ============================== ====================================== ================== 7 30 98.1 36 GTTTCAGATGGACCCTTGTGGGGTTGAAGC # Left flank : AGACCAGCTAAGAACACGTGCAATGCGCCACAGCTGTTGGTTTTGGAAATCTGTGACGAAGTATCCCATATTTGCGATTCCAACGACGCCGAGTCCAAGCAGGAACGTACTCAGTAACAGCCAGCGTCGGATTGAACGTAGTAGCACCGCTTTCTCGGAGGGCATGGAACGTGTGTTCAATGCGACCAGTAACAATCTACCGATACTCAAGCCTGGATTGCTGACGCCATCGAAAAGACACTTGAGCGCGAAGCTCAGGAGAGAGCTGCGGGAACCCCGGCCAAGCGGTGACGACAGCTGACTGAGTGTGCAACGTGGTCGTTGTCACTGTCATACGAGAGCTAACCGTGACCGAGTTAGCTGATGGGGAAGATTGTGAATTCTCTAGTGGAGTGGGGTTTTCCATCGACCCCCGGGGGGTTTGGGGGGTATTGGAGGTCGACGGAAACAATGAAGTGAAGACCAGGTGTAGGAGTGCTCACGTGGCTGAATCGGCCATG # Right flank : CGGCGAGCGCAGTAGCCGACGTCCCACCTCACAGCCGAGGTTCTTGACATAGTAGATGGTAGATCCTGTCAAGGTTGGATTCTGAGGAACGGGTTTATAATTGGGATTCGATACGTCAAAATATGATCGATCCAACTCAAGCCGTGTGGTACGGGACAGCGGTAATTGCGTCCCTCCTTGTCCTCGTGCTGTACTATACAGCCGGCAAAAAGATCCTGGACTTCTTCGACTGGCTCCGATCGGTCGCATACTAATCCCCTATCCTCTGGGACCAGCTGGTGGGTACTGGCTCGGATCCCCTCTGGGTAGACTGTACCACCAGCCTCCTGGCTGAGTGAGGCGGCTGGACGGGCGCACAACTACTAGCCGAGGGGGAAGATTGTGAGTTCTCCGTGGGGTGGAGTTTACCATCGACCCCCGGGGGGCTTGGGGGGTATTGGAGGTCGACGGAAACAATGAAGTAGGGATCGGGTGTAGGAGTGTTCACGTGGCTGAATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGATGGACCCTTGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.50,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 38665-38893 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP070376.1 Halobacterium sp. GSL-19 plasmid pGSL19_54.9, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 38665 30 100.0 37 .............................. GCCGCTCATGTCGAACTCGGCGGCGCCGGCGAACAGG 38732 30 100.0 36 .............................. GCGGCATACCGCCAGCTCCTCGAATCACGGGACGGT 38798 30 100.0 36 .............................. CCAACCCACAGGCCCGACCCGATAGCGAGCAGCGAG 38864 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 4 30 100.0 37 GTTTCAGATGGACCCTTGTGGGGTTGAAGC # Left flank : ATTTCACCGCATGGACTAACTCGCCGCCGTGGGATACCCGGGATAATGGCCCCGCAGAAGGAACTGAATCCAGCGTCCAGACGAGAACCCCCCTGACCGGCCGGGGAAAGAACACCCAGCGTCGTGTATCCGGCCGACGCGCGAGACGTCCACTGATGTCGCCGGGTGGCCAGATCTCTTTCGAATGCTATTCAATTTCCGGGTCGCACTCAGGCGCGGACCCCCGTATCATTTCGATCATCCTGGAGTGCAAGCGACTGGGCTTGAGGTGTGTCATGGGCTTCGTGAGGCCGACTTCGAGGAGGCCGCAGCCAGGCGACACCTCTGAAATATAGGACCTAAATTCGAGAGTACTGCTAGTCGACGGGGAGGATTGTGAGTTCTCCAGTGGAGTGGGATTTTCCATCGACCCCCGGGGGGTTTGGGGGGTATTGGAGGTCGACGGAAACAATGAAGTAGAGATCGGGTGTAGGAGTGTTCACGTGGCTGAATCGGTCATG # Right flank : CTGCCCGTACCAAGGGTTATGGCCACGCGATTGGAATGAATGGGTATGGGAGTAGACGGAGACAACCCGGAGGATACCGACAACGCCGAGATGCTCCCCGACGAAGCCGCAGTCCTCCCCGAACGAGGCGAGGCTCTCGGCGACGCCGACGACGACCAGCTCCTCACCACCGAGGACACTGCCGAGCGTCTTGGCATCGACCTCGACTAGCAGTAGTCTTGATTTTACCAGCTATACCTCATTGCATGGACTAACTCGCTGCCGTGGGATACGCCGGCGTAAATGGCGCCACAGAACGAGCCGATCCAATCCAAGATCATCCAGAGGAGAAACTCCCCTGACCTGCTGGGGGAAGAACACTCAGAGTCGTGTATCCGGCCGACTTCGAGAAGACCCCAGCCAGGCCTCTGAAATATAAGACCTAAATTCGAAACTACTGCCAGCGAGGAACTTAGGAAACGGAGACAGCTCTCACACCTGATCCCGTACAGATGGTCTCA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGATGGACCCTTGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.50,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //